cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:49000001, elapsed 0.1s, est remaining 1.1s, peak mem 417MB, user 0.1s, sys 2.3s, output queue size 126
progress 10% @chr2:143000001, elapsed 0.1s, est remaining 1.0s, peak mem 417MB, user 0.3s, sys 7.5s, output queue size 287
progress 15% @chr3:68000001, elapsed 0.1s, est remaining 0.8s, peak mem 418MB, user 0.8s, sys 13.9s, output queue size 422
progress 20% @chr4:69000001, elapsed 0.2s, est remaining 0.8s, peak mem 418MB, user 1.2s, sys 20.2s, output queue size 576
progress 25% @chr4:137000001, elapsed 0.2s, est remaining 0.7s, peak mem 418MB, user 1.6s, sys 25.3s, output queue size 737
progress 30% @chr6:37000001, elapsed 0.3s, est remaining 0.6s, peak mem 418MB, user 1.8s, sys 30.1s, output queue size 899
progress 35% @chr7:11000001, elapsed 0.3s, est remaining 0.6s, peak mem 418MB, user 1.9s, sys 34.3s, output queue size 1060
progress 40% @chr8:35000001, elapsed 0.4s, est remaining 0.5s, peak mem 418MB, user 2.1s, sys 36.0s, output queue size 1221
progress 45% @chr9:77000001, elapsed 0.4s, est remaining 0.5s, peak mem 418MB, user 2.2s, sys 37.2s, output queue size 1383
progress 50% @chr10:73000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 2.3s, sys 38.5s, output queue size 1544
progress 55% @chr11:110000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 2.4s, sys 40.0s, output queue size 1706
progress 60% @chr12:108000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 2.6s, sys 42.2s, output queue size 1867
progress 65% @chr13:79000001, elapsed 0.5s, est remaining 0.3s, peak mem 418MB, user 2.8s, sys 44.9s, output queue size 2029
progress 70% @chr15:50000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 2.9s, sys 48.2s, output queue size 2191
progress 75% @chr17:17000001, elapsed 0.6s, est remaining 0.2s, peak mem 418MB, user 3.2s, sys 53.0s, output queue size 2089
progress 80% @chr17:79000001, elapsed 0.6s, est remaining 0.2s, peak mem 418MB, user 3.4s, sys 58.7s, output queue size 2252
progress 85% @chr20:62000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 3.9s, sys 64.8s, output queue size 2415
progress 90% @chrX:8000001, elapsed 0.7s, est remaining 0.1s, peak mem 418MB, user 4.3s, sys 70.3s, output queue size 2577
progress 95% @chrY:23000001, elapsed 0.7s, est remaining 0.0s, peak mem 418MB, user 4.7s, sys 76.4s, output queue size 2917
progress 100% @HLA-DQA1*04:01:02:02:1, elapsed 0.8s, est remaining 0.0s, peak mem 418MB, user 4.9s, sys 91.3s, output queue size 6162
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 51111
output file size: 43421
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.010 real
"predict_filter": 171 calls 0.000 user 0.012 sys 0.027 real
advance: 3219322 calls 0.398 user 35.229 sys 39.158 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.003 sys 0.876 real
fetch_ref: 460 calls 0.010 user 0.024 sys 0.017 real
idle: 20057 calls 0.508 user 0.921 sys 296.083 real
init: 1 calls 0.242 user 0.089 sys 0.487 real
overall: 439111680 mem 6.220 user 95.006 sys 2.447 real