File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/57d8b05d033be7a13493e766e769d7/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
[2026-05-27T17:56:02.631033Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T17:56:02.643074Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T17:56:02.643107Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T17:56:02.643114Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T17:56:02.643118Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXlhcusG'
[2026-05-27T17:56:02.643123Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T17:56:02.643128Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T17:56:02.643132Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T17:56:02.643137Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T17:56:02.643141Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T17:56:02.643145Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T17:56:02.643149Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T17:56:02.643153Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T17:56:02.643157Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T17:56:02.644056Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T17:56:02.644170Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T17:56:02.649761Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T17:56:02.650683Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T17:56:02.650870Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T17:56:02.651074Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T17:56:02.651422Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.652177Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.652273Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.652347Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.652463Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.652711Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.653096Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.653247Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.653346Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.654068Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.654312Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.655878Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.656208Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T17:56:02.656383Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.656632Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.656700Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.656817Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.656881Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.656993Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.657054Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.657245Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.657308Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.657422Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.657486Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.657751Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658017Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658149Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658224Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658338Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658408Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658521Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658613Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658732Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658798Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658910Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.658979Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.659292Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.659559Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.659674Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.659745Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.659858Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.659924Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.660078Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.660147Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.660258Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.660337Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.660454Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.660524Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.660724Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.660841Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.661236Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.661592Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662094Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662170Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662294Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662364Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662488Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662559Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662672Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662743Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662857Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.662923Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.663046Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.663551Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.663668Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.663744Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.663860Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.663929Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.664047Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.664121Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.664236Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.664328Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.664445Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.664520Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.681930Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682135Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682226Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682426Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682501Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682588Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682653Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682766Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682833Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:02.682878Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T17:56:02.683423Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.684150Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.684499Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.684927Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.687065Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.691826Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T17:56:02.692212Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T17:56:02.693791Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.694343Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T17:56:02.695638Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.698395Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T17:56:02.701050Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T17:56:02.701617Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.703373Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.704607Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T17:56:02.707537Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T17:56:02.708406Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T17:56:02.769085Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.769145Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.769923Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.770241Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:02.773372Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T17:56:02.774602Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T17:56:03.135395Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.136280Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.139142Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T17:56:03.652397Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.653273Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.656941Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T17:56:03.718142Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.719213Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.719547Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.721736Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T17:56:03.722461Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.722794Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.724773Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.725420Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T17:56:03.727839Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T17:56:03.756956Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.757688Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.760326Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T17:56:03.789903Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.790674Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.792991Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T17:56:03.854648Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.854732Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.855522Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.855822Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.858862Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T17:56:03.859846Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T17:56:03.866060Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.866779Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.869181Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T17:56:03.898840Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.899566Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.901975Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T17:56:03.931986Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.932752Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.935124Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T17:56:03.964654Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.965443Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:03.968008Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T17:56:04.531406Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.532278Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.535590Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T17:56:04.596987Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.597837Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.601174Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T17:56:04.662183Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.663016Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.666002Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T17:56:04.695417Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.696225Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.699075Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T17:56:04.860879Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.861719Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.864792Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T17:56:04.926452Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.927211Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.929775Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T17:56:04.959525Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.960273Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:04.962774Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T17:56:05.024399Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.025216Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.028477Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T17:56:05.140127Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.140239Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.140943Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.141413Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.144580Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T17:56:05.145647Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T17:56:05.173780Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.174846Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.175120Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.177231Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.177676Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T17:56:05.180106Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T17:56:05.209396Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.210134Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.212922Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T17:56:05.274459Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.275202Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.278193Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T17:56:05.439628Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.440336Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.443402Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T17:56:05.472380Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.473085Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.476100Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T17:56:05.888199Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.888288Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.888939Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.889297Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.892347Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T17:56:05.893580Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T17:56:05.921800Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.922521Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.925279Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T17:56:05.986826Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.986906Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.987562Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.988216Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:05.991066Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T17:56:05.992030Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T17:56:06.020553Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.021211Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.023922Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T17:56:06.053214Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.053906Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.056776Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T17:56:06.086063Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.086725Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.089347Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T17:56:06.251175Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.251905Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.254973Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T17:56:06.284586Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.285307Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.287815Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T17:56:06.317481Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.317555Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.318151Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.318570Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.321821Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T17:56:06.323037Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T17:56:06.351192Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.351829Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.354453Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T17:56:06.466073Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.466734Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469625Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T17:56:06.498838Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.499430Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.502212Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T17:56:06.531498Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.532123Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.534794Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T17:56:06.696423Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.697060Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.699928Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T17:56:06.761224Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.761912Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.764761Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T17:56:06.826367Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.826981Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.829599Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T17:56:06.859345Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.859910Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.862393Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T17:56:06.891794Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.892373Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.895300Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T17:56:06.956648Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.957248Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.960194Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T17:56:06.989556Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.990159Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.992865Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T17:56:06.993755Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.994288Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.996795Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T17:56:07.026308Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.026387Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.026824Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.027155Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.030175Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T17:56:07.031252Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T17:56:07.059443Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.059984Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.062013Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.062589Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.062767Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T17:56:07.065065Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T17:56:07.094581Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.094664Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.309187Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.309710Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.312752Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T17:56:07.341870Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.342426Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.345066Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T17:56:07.350318Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.382358Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.596838Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.597279Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.600051Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T17:56:07.629406Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.793840Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.794365Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.796966Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T17:56:07.826479Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.041081Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.041582Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.044157Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T17:56:08.073646Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.138326Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.138820Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.141656Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T17:56:08.203129Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.203436Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.203603Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.204060Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.204439Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.208795Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T17:56:08.210288Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T17:56:08.211358Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T17:56:08.237826Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.237899Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.237925Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.238157Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.238638Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.241190Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T17:56:08.266017Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T17:56:08.270760Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.270826Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.271049Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.273463Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T17:56:08.303037Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:13.230383Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T17:56:21.532058Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T17:56:21.532058Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] 
[2026-05-27T17:56:21.532058Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T17:56:21.532111Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] 
[2026-05-27T17:56:21.532124Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T17:56:21.532131Z] [nf-ef57d8b05d033be7a13493e766e769d7-44fbf-nnszs] [567_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec