cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144258777, elapsed 0.0s, est remaining 0.7s, peak mem 84MB, user 0.0s, sys 0.1s, output queue size 2030
progress 10% @chr9:36903627, elapsed 0.1s, est remaining 0.7s, peak mem 87MB, user 0.0s, sys 0.3s, output queue size 4246
progress 15% @chr9:96763118, elapsed 0.1s, est remaining 0.7s, peak mem 97MB, user 0.0s, sys 0.3s, output queue size 1211
progress 20% @chr9:128945687, elapsed 0.2s, est remaining 0.7s, peak mem 111MB, user 0.1s, sys 0.5s, output queue size 3834
progress 25% @chr10:14908408, elapsed 0.2s, est remaining 0.6s, peak mem 123MB, user 0.1s, sys 0.6s, output queue size 6583
progress 30% @chr10:69261139, elapsed 0.2s, est remaining 0.6s, peak mem 127MB, user 0.1s, sys 0.8s, output queue size 8991
progress 35% @chr10:100505361, elapsed 0.3s, est remaining 0.5s, peak mem 138MB, user 0.1s, sys 0.9s, output queue size 11625
progress 40% @chr11:320565, elapsed 0.3s, est remaining 0.5s, peak mem 150MB, user 0.2s, sys 1.1s, output queue size 14212
progress 45% @chr11:17788085, elapsed 0.4s, est remaining 0.4s, peak mem 162MB, user 0.2s, sys 1.2s, output queue size 16363
progress 50% @chr11:61429757, elapsed 0.4s, est remaining 0.4s, peak mem 171MB, user 0.2s, sys 1.4s, output queue size 18734
progress 55% @chr11:73234160, elapsed 0.4s, est remaining 0.4s, peak mem 181MB, user 0.2s, sys 1.6s, output queue size 21400
progress 60% @chr11:114445979, elapsed 0.5s, est remaining 0.3s, peak mem 192MB, user 0.3s, sys 1.6s, output queue size 23691
progress 65% @chr12:6464876, elapsed 0.5s, est remaining 0.3s, peak mem 202MB, user 0.3s, sys 1.8s, output queue size 26054
progress 70% @chr12:31697740, elapsed 0.5s, est remaining 0.2s, peak mem 208MB, user 0.3s, sys 1.9s, output queue size 28143
progress 75% @chr12:55971521, elapsed 0.6s, est remaining 0.2s, peak mem 225MB, user 0.3s, sys 2.0s, output queue size 30622
progress 80% @chr12:99984104, elapsed 0.6s, est remaining 0.2s, peak mem 234MB, user 0.4s, sys 2.1s, output queue size 33350
progress 85% @chr12:123800216, elapsed 0.7s, est remaining 0.1s, peak mem 246MB, user 0.4s, sys 2.4s, output queue size 36212
progress 90% @chr13:48464982, elapsed 0.7s, est remaining 0.1s, peak mem 258MB, user 0.4s, sys 2.5s, output queue size 38573
progress 95% @chr13:109782042, elapsed 0.8s, est remaining 0.0s, peak mem 267MB, user 0.5s, sys 2.7s, output queue size 40836
progress 100% @chr14:61762461, elapsed 0.8s, est remaining 0.0s, peak mem 279MB, user 0.5s, sys 2.9s, output queue size 43380
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71738970
output file size: 22309
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.007 sys 0.018 real
advance: 50143 calls 0.000 user 0.011 sys 0.020 real
calc: 98785 calls 0.000 user 0.010 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.008 user 0.001 sys 1.439 real
fetch: 98785 calls 0.000 user 0.000 sys 0.019 real
fetch_ref: 98785 calls 0.102 user 0.042 sys 0.388 real
idle: 39 calls 0.003 user 0.007 sys 20.219 real
init: 1 calls 0.040 user 0.000 sys 0.042 real
region: 98785 calls 0.000 user 0.004 sys 0.021 real
tracker: 98785 calls 0.046 user 0.001 sys 0.088 real
overall: 295931904 mem 1.019 user 4.662 sys 2.558 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory