File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/92afa46ebcfdc49d01738281cd8810/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T17:56:06.448926Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T17:56:06.450936Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T17:56:06.450949Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T17:56:06.450954Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T17:56:06.450958Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXopRdQG'
[2026-05-27T17:56:06.450961Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T17:56:06.450966Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T17:56:06.450970Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T17:56:06.450980Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T17:56:06.450984Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T17:56:06.450991Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T17:56:06.450995Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T17:56:06.451001Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T17:56:06.451005Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T17:56:06.451732Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T17:56:06.451851Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T17:56:06.457525Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T17:56:06.458351Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T17:56:06.458543Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T17:56:06.459069Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T17:56:06.459332Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.459946Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.460037Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.460112Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.460231Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.460332Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.460605Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.460925Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.461026Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.461281Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.461354Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.461466Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.461645Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.462047Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.462479Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.462732Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.464246Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.464644Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T17:56:06.464907Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.464980Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.465161Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.465230Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.465342Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.465413Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.465522Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.465583Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.466292Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.466539Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.466652Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.466719Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.466831Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.466899Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.467035Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.467099Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.467211Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.467276Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.467427Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.467499Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.467693Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.467836Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.468461Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.468749Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.468866Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.468931Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469037Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469098Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469209Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469272Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469438Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469503Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469614Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469678Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.469925Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.470339Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.470470Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.470535Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.470653Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.470723Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.470832Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.470895Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.471004Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.471065Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.471175Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.471239Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.485329Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.485795Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.485862Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.486030Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.486105Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.486194Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.486261Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.486367Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.486436Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T17:56:06.486483Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T17:56:06.488899Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.489436Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.491021Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.492510Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.493012Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T17:56:06.493300Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.493662Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.494170Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.494982Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.495671Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.501147Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T17:56:06.506235Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T17:56:06.507085Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T17:56:06.507777Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T17:56:06.511010Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T17:56:06.511341Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T17:56:06.512022Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T17:56:06.611293Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.611372Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.611392Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.612052Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.612540Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.612900Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.617545Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T17:56:06.617903Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T17:56:06.618633Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T17:56:06.645734Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.646463Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.648866Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T17:56:06.662327Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.662955Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.665378Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T17:56:06.670711Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.671343Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.673639Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T17:56:06.735436Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.736126Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.739021Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T17:56:06.850708Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.851391Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.854544Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T17:56:06.965771Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.966544Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.969333Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T17:56:06.998624Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.998730Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.999377Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:06.999685Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.002772Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T17:56:07.003327Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T17:56:07.031864Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.032558Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.035374Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T17:56:07.064665Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.065369Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.068072Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T17:56:07.129413Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.130167Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.133045Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T17:56:07.194478Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.195215Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.198029Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T17:56:07.409697Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.410476Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.413168Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T17:56:07.442400Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.443088Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.445626Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T17:56:07.707616Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.708279Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.711042Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T17:56:07.872568Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.873273Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.876041Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T17:56:07.889084Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.889177Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.889199Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.889755Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.890046Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.890214Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.892954Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T17:56:07.894134Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T17:56:07.895205Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T17:56:07.906736Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.907304Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.909638Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T17:56:07.923153Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.923698Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.925483Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.926391Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T17:56:07.926711Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.926946Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.929093Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T17:56:07.929210Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.931954Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T17:56:07.944980Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.945526Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.947916Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T17:56:07.953155Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.953675Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.956213Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T17:56:07.957222Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.957659Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.959879Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T17:56:07.973514Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.974044Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T17:56:07.976240Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T17:56:08.006872Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.006946Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.007426Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.007820Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.010458Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T17:56:08.011643Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T17:56:08.039801Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.040353Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.042307Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.042959Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T17:56:08.043069Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.045752Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T17:56:08.257903Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.258519Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.261112Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T17:56:08.290481Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.290562Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.291061Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.291335Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.294338Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T17:56:08.295693Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T17:56:08.323901Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.324419Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.327088Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T17:56:08.356256Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.356785Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.359204Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T17:56:08.388912Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.389429Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.392065Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T17:56:08.453535Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.454113Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.456443Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T17:56:08.470096Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.470672Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.472982Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T17:56:08.486452Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.486940Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.489237Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T17:56:08.502915Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.503397Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.505835Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T17:56:08.519327Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.519826Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.522495Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T17:56:08.551998Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.552474Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.555055Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T17:56:08.560159Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.560666Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.563013Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T17:56:08.592754Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.592827Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.593274Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.593597Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.596212Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T17:56:08.597064Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T17:56:08.658656Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.658776Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.823234Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.823777Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.826733Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T17:56:08.856059Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.888295Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.889015Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.889306Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.891090Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.892715Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T17:56:08.893569Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T17:56:08.923545Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:08.923630Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.038010Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.038482Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.041115Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T17:56:09.070505Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.134779Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.135229Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T17:56:09.137507Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T17:56:09.167150Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.233715Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.234213Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.236845Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T17:56:10.266433Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.266700Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.266849Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.267170Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.267328Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.271268Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T17:56:10.272687Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T17:56:10.273639Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T17:56:10.299649Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.299724Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.299746Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.299975Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.300325Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.303030Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T17:56:10.303896Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T17:56:10.364691Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.364775Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.365002Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T17:56:10.367383Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T17:56:10.397081Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T17:56:12.115343Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T17:56:16.991090Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T17:56:16.991090Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] 
[2026-05-27T17:56:16.991090Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T17:56:16.991139Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] 
[2026-05-27T17:56:16.991145Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T17:56:16.991151Z] [nf-7792afa46ebcfdc49d01738281cd8810-f6341-qtsn5] [582_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec