File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/59e22001d8595c1f010b29f563267e/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhAQy4l/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhAQy4l/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhAQy4l/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T18:50:08.932235Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:08.933251Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:08.933262Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:08.933266Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:08.933271Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXhAQy4l'
[2026-05-27T18:50:08.933275Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:08.933280Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:08.933283Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:08.933287Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:08.933291Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:08.933294Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:08.933298Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:08.933301Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:08.933306Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:08.933705Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:08.933822Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:08.939526Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:08.940186Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:08.940393Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:08.940565Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:08.940747Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941057Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941141Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941226Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941380Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941443Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941578Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941643Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941760Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.941833Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.942074Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.942192Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.942559Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.942700Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.942926Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.943412Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.943914Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.944965Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.945496Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.946143Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:08.946306Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.946570Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.946928Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.946998Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947109Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947175Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947290Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947359Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947469Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947534Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947642Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947736Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947847Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948015Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948350Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948415Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948522Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948584Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948692Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948758Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948870Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.948962Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.949080Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.949147Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.950479Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.950692Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.950810Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.950873Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951046Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951113Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951223Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951286Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951396Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951461Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951578Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951640Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.951926Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.952332Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.952613Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.953373Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.953612Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.953699Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.953832Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.953900Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.954010Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.954152Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.970925Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.971245Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.971332Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.971501Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.971575Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.971750Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.971903Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.972128Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.972203Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.973497Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:08.973809Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.974743Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.975230Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.976036Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.976916Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.978046Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.978970Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.980615Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.981171Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.986036Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:08.988180Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:08.993031Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:08.993616Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:08.997410Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T18:50:08.999483Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T18:50:09.000160Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T18:50:09.003000Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:09.097871Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.098623Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.101413Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T18:50:09.764435Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.765251Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.768106Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T18:50:09.829410Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.830230Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.833056Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T18:50:10.094985Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.095771Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.098531Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T18:50:10.360578Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.361400Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.364270Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T18:50:10.425660Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.425739Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.426432Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.426721Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.429786Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:10.430411Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T18:50:10.459254Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.460016Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.462433Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:10.524188Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.524973Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.527537Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:10.739329Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.740110Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.743219Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:10.772264Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.772960Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.775803Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T18:50:10.887275Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.888071Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.890724Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:10.919980Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.920678Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.923193Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T18:50:10.984952Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.985705Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.988111Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T18:50:11.017641Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.018321Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.020819Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T18:50:11.082268Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.082978Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.085447Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:11.147086Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.148068Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.150895Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:11.212059Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.212766Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.215113Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:11.216255Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.216767Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.219095Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T18:50:11.248608Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.248683Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.249333Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.249590Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.252121Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T18:50:11.252889Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T18:50:11.281520Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.282177Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.283792Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.284410Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.284640Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T18:50:11.286696Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:11.316415Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.316486Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.317014Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.317283Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.319997Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T18:50:11.320856Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T18:50:11.582284Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.582975Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.585790Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:11.647099Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.647752Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.650366Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:11.679612Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.680213Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.682728Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:11.894636Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.894716Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.894743Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.895322Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.895623Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.896016Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.899835Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T18:50:11.900109Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T18:50:11.900796Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T18:50:11.928470Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.928557Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.929390Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.929623Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.929939Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.932514Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.932748Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:11.935425Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T18:50:11.935941Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T18:50:11.965344Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.965432Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.965956Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.966217Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.969948Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T18:50:12.131145Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.131759Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.134463Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T18:50:12.163949Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.164509Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.167447Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T18:50:12.479211Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.479829Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.482534Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T18:50:12.543844Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.544392Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.547094Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T18:50:12.809051Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.809654Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.812606Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:12.873750Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.873842Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.874309Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.874581Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.877472Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:12.878689Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T18:50:12.939076Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.939636Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.942298Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T18:50:12.955401Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.955887Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.958495Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T18:50:12.971640Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.972094Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.974987Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:12.987932Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.988510Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.990835Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T18:50:13.020291Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.020869Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.023369Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T18:50:13.024358Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.024891Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.027302Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:13.056749Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.056832Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.057381Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.060008Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:13.121278Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.121883Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.124684Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:13.185870Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.751029Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.751522Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.754225Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T18:50:13.783582Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.839438Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T18:50:13.847596Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.847656Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.848013Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.848498Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.851241Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T18:50:13.852168Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T18:50:13.880384Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.880457Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.880480Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.880844Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.883034Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T18:50:13.913916Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.128122Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.128507Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.131013Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T18:50:14.160333Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.324743Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.325172Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.327509Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:14.357013Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.357262Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.357384Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.357696Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.357921Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.361481Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.362222Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.364146Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:14.390032Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.390103Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.390128Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.390327Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.390640Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.393443Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.418070Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.423187Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.423260Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.423435Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.425596Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:14.455297Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.619397Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:19.495524Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:19.495524Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] 
[2026-05-27T18:50:19.495524Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:19.495583Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] 
[2026-05-27T18:50:19.495589Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:19.495595Z] [nf-4559e22001d8595c1f010b29f563267e-832a4-4jqtk] [592_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec