Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/2dcebc8ec310c3a9b8392b3dcf7f7f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/2dcebc8ec310c3a9b8392b3dcf7f7f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/8cec261d5efbf269078e42e83159b5/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/8cec261d5efbf269078e42e83159b5/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX1hTS5e/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX1hTS5e/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX1hTS5e/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T18:50:08.478184Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:08.479829Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:08.479841Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:08.479846Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:08.479850Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX1hTS5e'
[2026-05-27T18:50:08.479854Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:08.479859Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:08.479863Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:08.479866Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:08.479870Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:08.479874Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:08.479877Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:08.479881Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:08.479885Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:08.480614Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:08.480735Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:08.486539Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:08.487318Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:08.487475Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:08.487734Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:08.488013Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.488370Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.488460Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.488529Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.488644Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.488710Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.488829Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.488891Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.489011Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.489080Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.489481Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.489757Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.489962Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.490110Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.490457Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.492253Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.492669Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.493241Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:08.493397Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.493472Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.493665Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.493735Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.493850Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.493937Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.494203Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.494433Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.494555Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.494623Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.494733Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.494800Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.494913Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.494979Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.495117Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.495180Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.495290Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.495357Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.495487Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.495687Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.496014Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.496304Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.496745Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.496816Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.496927Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.496990Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.497614Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.497679Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.498057Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.498397Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.498574Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.498640Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.498750Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.498813Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.498924Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.498987Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.499099Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.499162Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.499276Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.499342Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.499508Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.499653Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.500192Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.500259Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.500427Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.500491Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.500598Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.500665Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.516330Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.516796Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.516897Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.517206Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.517343Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.517450Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.517516Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.517625Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.517696Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.518892Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:08.519051Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.519803Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.520474Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.521125Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.522232Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.523092Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.523602Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.525221Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.527964Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:08.529723Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.530402Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T18:50:08.536021Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T18:50:08.538480Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:08.541100Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T18:50:08.542509Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T18:50:08.545513Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:08.546515Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T18:50:08.647697Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.647765Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.648428Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.648862Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.651997Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:08.652862Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T18:50:09.615444Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.616193Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619090Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:09.648202Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.648926Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.652044Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:09.712941Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.713013Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.713707Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.714201Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.716882Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T18:50:09.717884Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T18:50:09.746196Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.746901Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.749719Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:09.860965Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.861033Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.861651Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.861915Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.864930Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T18:50:09.866031Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T18:50:09.893932Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.894596Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.897021Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T18:50:09.926384Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.927065Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.929122Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T18:50:09.958870Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.959468Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.962178Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T18:50:10.023393Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.024067Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.027132Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T18:50:10.031826Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.032408Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.035087Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:10.096674Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.097321Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.099892Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T18:50:10.211510Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.212149Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.214914Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T18:50:10.476920Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.477621Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.480400Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:10.509691Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.510294Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.513015Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T18:50:10.674637Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.675348Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677912Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T18:50:10.707178Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.707788Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.710386Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:11.022846Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.023525Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.026309Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T18:50:11.055559Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.056152Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.058784Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:11.087972Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.088535Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.091142Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T18:50:11.092135Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.092626Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.095052Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:11.124593Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.125146Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.128166Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:11.189111Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.189727Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.192427Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:11.221842Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.221941Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.222522Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.222815Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.225647Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T18:50:11.226779Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T18:50:11.287023Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.287091Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.287620Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.287884Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.290803Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T18:50:11.321792Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T18:50:11.351973Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.352048Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.352608Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.352915Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.356015Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T18:50:11.357169Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T18:50:11.385197Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.385768Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.388844Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:11.393560Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.394061Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.396517Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:11.425930Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.426506Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.429362Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T18:50:11.791888Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.792451Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.795185Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T18:50:11.856517Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.857091Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.859599Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T18:50:11.921154Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.921707Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.924228Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:11.953540Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.954090Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.956706Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T18:50:11.986076Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.986672Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.989287Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T18:50:12.100767Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.101290Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.104045Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:12.133186Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.133701Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.136401Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:12.197814Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.197875Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.198336Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.198606Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.201259Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:12.232116Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T18:50:12.263163Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.263243Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.263684Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.263951Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.266735Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:12.267982Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:12.297472Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.297572Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.298012Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.298531Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.301104Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:12.302217Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T18:50:12.330661Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.330725Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.331124Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.331585Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.334245Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T18:50:12.348095Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.348517Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.350787Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T18:50:12.380567Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.444557Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.444998Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.447999Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T18:50:12.508994Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.074252Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.074702Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.077648Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T18:50:13.106782Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.271076Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.271476Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.274005Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T18:50:13.303202Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.344261Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:13.367110Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.367169Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.367500Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.370146Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T18:50:13.399656Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.014935Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.015295Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.017656Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:14.048170Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.112238Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.112578Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.114657Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T18:50:14.144431Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.144656Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.144775Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.145140Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.145461Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.150393Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.152181Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.152958Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:14.178349Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.178403Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.178423Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.178591Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.178995Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.181250Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.182171Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.210900Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.210963Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.211131Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.213170Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:14.243849Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:19.117965Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:27.368399Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:27.368399Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] 
[2026-05-27T18:50:27.368399Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:27.368465Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] 
[2026-05-27T18:50:27.368474Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:27.368481Z] [nf-112dcebc8ec310c3a9b8392b3dcf7f7f-1ae53-x6m52] [579_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec