cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --read_filter QualCalFilter,table=Sig_18_tissue.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table.post --algo ReadWriter Sig_18_tissue.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:162000001, elapsed 0.2s, est remaining 2.9s, peak mem 419MB, user 0.4s, sys 3.7s, output queue size 11
progress 10% @chr2:75000001, elapsed 0.3s, est remaining 2.4s, peak mem 806MB, user 0.7s, sys 7.1s, output queue size 41
progress 15% @chr2:218000001, elapsed 0.4s, est remaining 2.2s, peak mem 1020MB, user 1.0s, sys 10.7s, output queue size 17
progress 20% @chr3:148000001, elapsed 0.5s, est remaining 2.1s, peak mem 1166MB, user 1.2s, sys 14.0s, output queue size 5
progress 25% @chr4:114000001, elapsed 0.6s, est remaining 1.9s, peak mem 1325MB, user 1.5s, sys 17.4s, output queue size 16
progress 30% @chr5:79000001, elapsed 0.7s, est remaining 1.7s, peak mem 1497MB, user 1.8s, sys 20.7s, output queue size 8
progress 35% @chr6:69000001, elapsed 0.9s, est remaining 1.6s, peak mem 1622MB, user 2.1s, sys 23.9s, output queue size 12
progress 40% @chr7:56000001, elapsed 1.0s, est remaining 1.5s, peak mem 1709MB, user 2.4s, sys 27.3s, output queue size 15
progress 45% @chr8:59000001, elapsed 1.1s, est remaining 1.3s, peak mem 1874MB, user 2.7s, sys 30.4s, output queue size 18
progress 50% @chr9:73000001, elapsed 1.2s, est remaining 1.2s, peak mem 1988MB, user 2.9s, sys 33.7s, output queue size 19
progress 55% @chr10:95000001, elapsed 1.3s, est remaining 1.1s, peak mem 2075MB, user 3.2s, sys 36.8s, output queue size 3
progress 60% @chr11:123000001, elapsed 1.4s, est remaining 0.9s, peak mem 2130MB, user 3.5s, sys 39.9s, output queue size 9
progress 65% @chr12:131000001, elapsed 1.5s, est remaining 0.8s, peak mem 2225MB, user 3.7s, sys 43.0s, output queue size 18
progress 70% @chr14:60000001, elapsed 1.6s, est remaining 0.7s, peak mem 2282MB, user 3.9s, sys 46.1s, output queue size 1
progress 75% @chr16:13000001, elapsed 1.7s, est remaining 0.6s, peak mem 2292MB, user 4.1s, sys 49.2s, output queue size 24
progress 80% @chr18:1, elapsed 1.9s, est remaining 0.5s, peak mem 2355MB, user 4.3s, sys 52.5s, output queue size 5
progress 85% @chr20:23000001, elapsed 2.0s, est remaining 0.3s, peak mem 2367MB, user 4.5s, sys 56.0s, output queue size 4
progress 90% @chrX:39000001, elapsed 2.4s, est remaining 0.3s, peak mem 2784MB, user 8.2s, sys 57.3s, output queue size 114
progress 95% @chrY:46000001, elapsed 2.5s, est remaining 0.1s, peak mem 2795MB, user 9.4s, sys 57.6s, output queue size 276
progress 100% @chr21:41000001, elapsed 5.8s, est remaining 0.0s, peak mem 2829MB, user 28.4s, sys 58.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50047734
output file size: 93219163
reads: 1001838
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.035 real
ReadQualCal::delayed_init: 1 calls 0.008 user 0.000 sys 0.033 real
ReadQualCal::init: 1 calls 0.007 user 0.003 sys 0.006 real
advance: 3219322 calls 1.533 user 7.273 sys 8.848 real
done: 1 calls 0.312 user 0.493 sys 0.810 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.006 user 0.001 sys 5.860 real
fetch: 3219323 calls 0.267 user 6.989 sys 7.462 real
fetch_reads: 3219322 calls 0.416 user 6.817 sys 7.565 real
fetch_ref: 13004 calls 0.047 user 0.053 sys 0.053 real
fetch_vcf: 13004 calls 1.426 user 0.116 sys 1.640 real
idle: 2245 calls 2.722 user 0.332 sys 143.100 real
init: 1 calls 0.008 user 0.000 sys 0.039 real
update: 13229 calls 7.980 user 0.998 sys 9.676 real
write: 3219323 calls 11.775 user 6.727 sys 19.218 real
overall: 2968563712 mem 36.203 user 59.671 sys 8.063 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_tissue.table --after Sig_18_tissue.table.post Sig_18_tissue.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.029 user 0.001 sys 0.028 real
done: 1 calls 0.048 user 0.011 sys 0.059 real
idle: 61 calls 0.002 user 0.000 sys 31.247 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83648512 mem 0.077 user 0.033 sys 1.051 real