File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/5866c8644376393f410d59704c00f4/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-05-27T18:50:09.305707Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:09.320799Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:09.320831Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:09.320837Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:09.320841Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXShpsPa'
[2026-05-27T18:50:09.320845Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:09.320851Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:09.320855Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:09.320858Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:09.320862Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:09.320866Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:09.320869Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:09.320873Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:09.320877Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:09.321558Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:09.321689Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:09.327355Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:09.328011Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:09.328205Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:09.328406Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:09.328619Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.329317Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.329410Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.329482Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.329597Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.329691Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.330040Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.330175Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.330281Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.330729Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.331087Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.331280Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.331386Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.332723Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.333137Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.333449Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:09.333805Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.333928Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334253Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334321Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334511Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334580Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334691Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334757Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334870Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334934Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.335057Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.335124Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.335289Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.335448Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.335958Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336184Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336297Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336358Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336467Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336530Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336637Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336705Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336810Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336876Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336987Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.337076Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.337231Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.337328Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.337851Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338216Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338332Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338446Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338559Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338624Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338738Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338802Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338911Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.338971Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.339080Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.339145Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.339267Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.339432Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.339891Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.339953Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340064Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340124Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340262Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340343Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340456Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340577Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340686Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340746Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.340868Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.341017Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.341590Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.341670Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.341786Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.341854Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.358246Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.358783Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.358930Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.359128Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.359279Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.359971Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.360034Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.360208Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.360315Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.360688Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.360837Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.361524Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.361698Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.361899Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:09.362527Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.363135Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.364191Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.366609Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T18:50:09.366908Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.367708Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.371971Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:09.374389Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:09.376898Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T18:50:09.380455Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T18:50:09.382000Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:09.382907Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T18:50:09.385486Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T18:50:09.446895Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.446960Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.446992Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.447658Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.447866Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.448130Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.454094Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T18:50:09.454611Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T18:50:09.455238Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:10.314885Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.315755Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.318660Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T18:50:10.430363Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.431165Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.433946Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:10.463209Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.464024Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.466719Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:10.628614Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.629463Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.632619Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T18:50:10.693729Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.694550Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.697596Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T18:50:10.758670Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.759492Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.762331Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:10.791341Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.792103Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.794909Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T18:50:10.796089Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.796748Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.799412Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T18:50:10.828811Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.828887Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.828917Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.829586Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.829941Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.830340Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.834249Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T18:50:10.835779Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:10.836572Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T18:50:10.895909Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.896645Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.899582Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T18:50:10.904530Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.905142Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.907697Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T18:50:11.069685Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.070526Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.073611Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T18:50:11.185012Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.185821Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.188390Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:11.217827Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.218564Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.221276Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T18:50:11.483053Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.483830Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.486706Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T18:50:11.515918Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.516657Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.519221Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T18:50:11.548593Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.549314Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.551853Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T18:50:11.581256Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.582004Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.584761Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:11.613966Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.614676Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.617673Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T18:50:11.630888Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.631562Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.634176Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T18:50:11.663590Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.664201Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.666737Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:11.728300Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.728983Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.732066Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T18:50:12.294412Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.295089Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.297823Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T18:50:12.326992Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.327643Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.329806Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T18:50:12.359425Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.360049Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.362469Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:12.391930Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.392534Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.395009Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T18:50:12.507061Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.507744Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.510460Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T18:50:12.722326Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.722993Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.725832Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T18:50:12.755021Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.755655Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.758304Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T18:50:12.787691Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.788348Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.791278Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T18:50:12.820504Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.821135Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.823209Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.823862Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.824075Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T18:50:12.826366Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:12.855925Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.856494Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.859124Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T18:50:12.888403Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.889001Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.891684Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:12.920952Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.921551Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.924396Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T18:50:12.953730Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.953821Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.954360Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.954781Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.958039Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:12.987185Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.987741Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.990294Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T18:50:13.008016Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T18:50:13.019644Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.019724Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.020277Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.020586Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.023395Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:13.024561Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T18:50:13.052683Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.053273Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.055687Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T18:50:13.085161Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.085758Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.088253Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:13.250109Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.250777Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.253610Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T18:50:13.282801Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.283331Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.285891Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T18:50:13.315343Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.315885Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.318627Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:13.347941Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.348482Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.351395Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:13.412552Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.413097Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.415845Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:13.477296Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.477380Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.477893Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.478167Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.481098Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:13.482182Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:13.542316Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.542847Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.545542Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T18:50:13.574835Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.575336Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.578074Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T18:50:13.607232Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.607731Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.610418Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:13.639808Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.640295Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.642678Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T18:50:13.656078Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.656533Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.658969Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T18:50:13.672479Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.688244Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.852456Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.852531Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.852935Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.853251Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.855882Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T18:50:13.856682Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T18:50:13.885256Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.885324Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.893009Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.893402Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.895560Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T18:50:13.925247Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.239878Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.240338Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.242799Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T18:50:14.272162Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.586829Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.587200Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.589647Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:14.594835Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.595216Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.597528Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:14.627190Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.627249Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.627454Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.627569Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.628009Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.628572Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.630318Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:14.632586Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.657001Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.662030Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.662091Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.662112Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.662293Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.662683Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.664828Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.665645Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.695385Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.695442Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.695606Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.697902Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:14.727668Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.991873Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:19.867016Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:19.867016Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] 
[2026-05-27T18:50:19.867016Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:19.867071Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] 
[2026-05-27T18:50:19.867081Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:19.867087Z] [nf-f85866c8644376393f410d59704c00f4-124a1-4w2lt] [580_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec