[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeA4Ysn/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeA4Ysn/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeA4Ysn/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T18:50:04.400431Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:04.406956Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:04.406981Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:04.406986Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:04.406990Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXeA4Ysn'
[2026-05-27T18:50:04.406994Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:04.406999Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:04.407002Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:04.407006Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-05-27T18:50:04.407009Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:04.407013Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:04.407017Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:04.407020Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:04.407024Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:04.407599Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:04.407657Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:04.413396Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:04.414114Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:04.414218Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:04.414964Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:04.415131Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.415837Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.416239Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.416584Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.416760Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.416989Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.418382Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.418722Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:04.419053Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.419241Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.419539Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.419607Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.419720Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.419783Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.419892Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.419954Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.420060Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.420123Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.420229Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.420294Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.420476Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.420605Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.420948Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421015Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421121Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421180Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421290Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421351Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421458Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421522Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421628Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421714Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421824Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.421884Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.422022Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.422115Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.422324Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.422830Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.423283Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.423353Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.423486Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.423554Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.423661Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.423721Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.424533Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.424859Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.424973Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425090Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425201Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425265Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425370Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425431Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425540Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425600Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425710Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425770Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.425957Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.426374Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.426480Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.426541Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.426648Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.426708Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.426815Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.426877Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.426981Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.427044Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.441823Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.442326Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.442409Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.442569Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.442641Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.442728Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.442791Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.442896Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.444266Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:04.444943Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:04.445045Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.445807Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.446319Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.447078Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.448255Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.449074Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.450248Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.452064Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.455332Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T18:50:04.458965Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:04.463002Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.465740Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T18:50:04.467259Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:04.467784Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T18:50:04.467919Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:04.468039Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:04.470185Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:04.581570Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.581656Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.582597Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.583044Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.586015Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:04.587018Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T18:50:04.697619Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.698453Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.701036Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:04.863165Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.863994Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.867018Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T18:50:05.629634Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.629732Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.630811Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.631362Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.633438Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.633589Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:05.634951Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.636889Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T18:50:05.638678Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T18:50:05.668321Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.669151Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.671865Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T18:50:05.783643Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.784477Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.787420Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:05.848927Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.849711Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.852729Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T18:50:05.865859Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.866580Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.869079Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T18:50:05.931039Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.931817Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.934949Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T18:50:06.246841Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.247617Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.250318Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:06.312084Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312855Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.315600Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:06.344981Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.345756Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.348381Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:06.377874Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.378913Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.381596Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:06.443125Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.443877Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.446437Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:06.476158Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.476882Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.479666Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T18:50:06.591307Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.592063Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.594558Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T18:50:06.625162Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.625854Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.629056Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T18:50:06.790544Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.791308Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.794225Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T18:50:06.956097Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.956230Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.956899Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.958685Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.959739Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T18:50:06.962183Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T18:50:06.991361Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.992100Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.994690Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T18:50:07.056209Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.056940Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.059644Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T18:50:07.171251Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.171354Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.172137Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.172426Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.175298Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T18:50:07.177696Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T18:50:07.204763Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.205395Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.208037Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:07.237175Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.237806Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.240321Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:07.301837Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.302566Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.305372Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:07.366907Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.367598Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.370566Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:07.832876Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.833491Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.836149Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:07.897913Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.898587Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.901360Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T18:50:07.930669Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.931247Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.934123Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T18:50:07.963526Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.964161Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.966953Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T18:50:07.997692Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.998326Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.000881Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:08.162786Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.162890Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.163450Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.164073Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.167122Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T18:50:08.168005Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T18:50:08.197231Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.197947Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.200387Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T18:50:08.229758Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.230512Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.233300Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T18:50:08.745369Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.746102Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.748808Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T18:50:08.810087Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.810964Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.813698Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T18:50:08.875033Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.875864Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.878447Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:08.939887Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.940629Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.943355Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T18:50:09.004648Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.004726Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.005356Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.005653Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.008309Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T18:50:09.035446Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T18:50:09.038499Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.039315Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.039820Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.040590Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.043449Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:09.044595Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T18:50:09.072632Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.072715Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.073320Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.073705Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.076430Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:09.077209Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T18:50:09.106473Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.107189Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.107478Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.110260Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T18:50:09.139635Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.203681Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.204276Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.207191Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T18:50:09.268496Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.332591Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.332659Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.332685Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.333054Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.333534Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.334189Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.337924Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T18:50:09.338155Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:09.339078Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T18:50:09.400298Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.400393Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.400417Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.166430Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.166884Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.169817Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T18:50:10.231263Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.997124Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.997585Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.000055Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:11.062065Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.062304Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.062428Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.063025Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.063612Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.066632Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:11.067034Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:11.068942Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:11.098479Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.098551Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.098596Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.098790Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.099016Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.101974Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:11.102784Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:11.133373Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.133442Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.133610Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.135587Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:11.165798Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.037338Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:23.295401Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:23.295401Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] 
[2026-05-27T18:50:23.295401Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:23.295464Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] 
[2026-05-27T18:50:23.295470Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:23.295477Z] [nf-bfaa64dac3d4d8bcfb18ef5399828eda-069db-8j8j2] [649_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec