cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 1570
progress 10% @chr2:20012409, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 11604
progress 15% @chr2:189052911, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 6701
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.6s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 17163
progress 25% @chr4:88462135, elapsed 0.2s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 27437
progress 30% @chr5:146514854, elapsed 0.2s, est remaining 0.5s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 37483
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.5s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 2763
progress 40% @chr7:128359340, elapsed 0.3s, est remaining 0.4s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 12231
progress 45% @chr9:2028988, elapsed 0.3s, est remaining 0.4s, peak mem 280MB, user 0.0s, sys 0.0s, output queue size 21602
progress 50% @chr10:32346763, elapsed 0.3s, est remaining 0.3s, peak mem 292MB, user 0.0s, sys 0.0s, output queue size 31535
progress 55% @chr11:48149447, elapsed 0.4s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 42002
progress 60% @chr12:21910826, elapsed 0.4s, est remaining 0.3s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 51549
progress 65% @chr13:49203157, elapsed 0.4s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 62598
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 72647
progress 75% @chr16:30930073, elapsed 0.5s, est remaining 0.2s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 82203
progress 80% @chr17:42338687, elapsed 0.5s, est remaining 0.1s, peak mem 301MB, user 0.0s, sys 0.0s, output queue size 92888
progress 85% @chr19:5604583, elapsed 0.6s, est remaining 0.1s, peak mem 330MB, user 0.0s, sys 0.0s, output queue size 103299
progress 90% @chr19:55691754, elapsed 0.6s, est remaining 0.1s, peak mem 331MB, user 0.0s, sys 0.0s, output queue size 112804
progress 95% @chr22:36937342, elapsed 1.0s, est remaining 0.1s, peak mem 2532MB, user 6.8s, sys 1.7s, output queue size 3222
progress 100% @chrY:57184264, elapsed 1.0s, est remaining 0.0s, peak mem 2532MB, user 6.9s, sys 1.7s, output queue size 5702
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 52291134
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.902 user 0.058 sys 2.210 real
done: 1 calls 0.268 user 0.070 sys 0.347 real
execute: 1 calls 0.002 user 0.010 sys 0.995 real
fetch_reads: 208647 calls 0.068 user 0.000 sys 0.154 real
fetch_ref: 2072 calls 0.004 user 0.006 sys 0.021 real
fetch_vcf: 2072 calls 0.922 user 0.047 sys 0.990 real
idle: 92 calls 0.003 user 0.001 sys 31.595 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.889 user 1.542 sys 7.009 real
overall: 2655293440 mem 10.813 user 8.522 sys 2.361 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory