File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/cfe6b0748d4f0afc527598bcc13209/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-togl_ydb because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:44,271 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:45,068 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:45,236 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:46,171 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:46,335 - cnv_pipe.batch.run_model - INFO - Processing cluster 1007 with 198 probes
2026-05-27 18:54:46,717 - cnv_pipe.batch.run_model.cluster1007 - INFO - Child process started for cluster 1007 with 198 probes
2026-05-27 18:55:44,325 - cnv_pipe.batch.run_model.cluster1007 - INFO - Child process finished cluster 1007. Wrote cluster_1007_samples.csv and cluster_1007_params.csv
2026-05-27 18:55:44,326 - cnv_pipe.batch.run_model - INFO - Cluster 1007 finished in 57.99 seconds. Status: SUCCESS