cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --read_filter QualCalFilter,table=HCC1395_tumor.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table.post --algo ReadWriter HCC1395_tumor.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:162000001, elapsed 0.1s, est remaining 2.3s, peak mem 291MB, user 0.4s, sys 2.8s, output queue size 16
progress 10% @chr2:73000001, elapsed 0.2s, est remaining 1.9s, peak mem 471MB, user 0.7s, sys 5.5s, output queue size 7
progress 15% @chr2:236000001, elapsed 0.3s, est remaining 1.8s, peak mem 627MB, user 1.0s, sys 8.1s, output queue size 8
progress 20% @chr3:156000001, elapsed 0.4s, est remaining 1.6s, peak mem 722MB, user 1.3s, sys 10.7s, output queue size 7
progress 25% @chr4:96000001, elapsed 0.5s, est remaining 1.5s, peak mem 813MB, user 1.6s, sys 13.3s, output queue size 19
progress 30% @chr5:86000001, elapsed 0.6s, est remaining 1.4s, peak mem 851MB, user 1.9s, sys 15.8s, output queue size 18
progress 35% @chr6:65000001, elapsed 0.7s, est remaining 1.3s, peak mem 891MB, user 2.1s, sys 18.3s, output queue size 19
progress 40% @chr7:56000001, elapsed 0.8s, est remaining 1.2s, peak mem 956MB, user 2.4s, sys 20.8s, output queue size 11
progress 45% @chr8:61000001, elapsed 0.9s, est remaining 1.1s, peak mem 1101MB, user 2.7s, sys 23.4s, output queue size 9
progress 50% @chr9:73000001, elapsed 1.0s, est remaining 1.0s, peak mem 1205MB, user 3.0s, sys 26.0s, output queue size 17
progress 55% @chr10:93000001, elapsed 1.0s, est remaining 0.9s, peak mem 1260MB, user 3.2s, sys 28.7s, output queue size 11
progress 60% @chr11:123000001, elapsed 1.1s, est remaining 0.8s, peak mem 1343MB, user 3.5s, sys 31.2s, output queue size 11
progress 65% @chr13:16000001, elapsed 1.2s, est remaining 0.7s, peak mem 1434MB, user 3.8s, sys 33.7s, output queue size 26
progress 70% @chr14:62000001, elapsed 1.3s, est remaining 0.6s, peak mem 1524MB, user 4.1s, sys 36.3s, output queue size 13
progress 75% @chr16:15000001, elapsed 1.4s, est remaining 0.5s, peak mem 1587MB, user 4.5s, sys 38.8s, output queue size 6
progress 80% @chr18:3000001, elapsed 1.5s, est remaining 0.4s, peak mem 1608MB, user 4.7s, sys 41.5s, output queue size 17
progress 85% @chr20:25000001, elapsed 1.6s, est remaining 0.3s, peak mem 1695MB, user 5.0s, sys 44.1s, output queue size 21
progress 90% @chrX:43000001, elapsed 2.0s, est remaining 0.2s, peak mem 2793MB, user 8.0s, sys 45.6s, output queue size 114
progress 95% @chrY:42000001, elapsed 2.1s, est remaining 0.1s, peak mem 2817MB, user 10.1s, sys 46.3s, output queue size 276
progress 100% @chr21:41000001, elapsed 4.7s, est remaining 0.0s, peak mem 2844MB, user 24.5s, sys 47.5s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50815488
output file size: 81350204
reads: 1001320
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.016 user 0.006 sys 0.026 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.022 real
ReadQualCal::init: 1 calls 0.009 user 0.001 sys 0.006 real
advance: 3219322 calls 1.642 user 5.860 sys 7.426 real
done: 1 calls 0.298 user 0.298 sys 0.597 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.006 user 0.001 sys 4.757 real
fetch: 3219322 calls 0.293 user 5.566 sys 6.039 real
fetch_reads: 3219322 calls 0.405 user 5.502 sys 6.121 real
fetch_ref: 11263 calls 0.023 user 0.008 sys 0.047 real
fetch_vcf: 11263 calls 1.051 user 0.064 sys 1.286 real
idle: 2492 calls 1.802 user 0.284 sys 99.049 real
init: 1 calls 0.001 user 0.000 sys 0.028 real
update: 11451 calls 5.990 user 1.091 sys 7.809 real
write: 3219322 calls 9.970 user 6.181 sys 15.714 real
overall: 2982846464 mem 30.374 user 48.516 sys 6.093 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_tumor.table --after HCC1395_tumor.table.post HCC1395_tumor.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.028 user 0.002 sys 0.024 real
done: 1 calls 0.038 user 0.012 sys 0.054 real
idle: 60 calls 0.003 user 0.000 sys 31.298 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 82075648 mem 0.059 user 0.044 sys 1.051 real