File Info

Filename
HCC1395_tumor.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/40b1f245c7d6cc5a302417d1a26838/HCC1395_tumor.csv
Size
1.4 MB
Task
DAQ:SENTIEON_BQSR:QUALCAL_APPLY (HCC1395_tumor)
Attempt

Content

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ReadGroup CovariateValue CovariateName EventType Observations Errors EmpiricalQuality AverageReportedQuality Accuracy Recalibration
REGRESSION.HCC1395_tumor.L001 AA Context Base Substitution 527509 1342.95 26.00 29.67 -3.67 Before
REGRESSION.HCC1395_tumor.L001 AAA Context Base Insertion 179094 30.42 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 AAA Context Base Deletion 179094 85.83 41.00 45.00 -4.00 Before
REGRESSION.HCC1395_tumor.L001 AAC Context Base Insertion 86062 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAC Context Base Deletion 86062 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAG Context Base Insertion 135271 2.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAG Context Base Deletion 135271 5.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAT Context Base Insertion 101892 0.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AAT Context Base Deletion 101892 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AC Context Base Substitution 358870 1129.35 25.00 28.71 -3.71 Before
REGRESSION.HCC1395_tumor.L001 ACA Context Base Insertion 132953 3.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACA Context Base Deletion 132953 5.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACC Context Base Insertion 105196 2.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACC Context Base Deletion 105196 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACG Context Base Insertion 20515 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACG Context Base Deletion 20515 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACT Context Base Insertion 105512 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ACT Context Base Deletion 105512 3.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AG Context Base Substitution 564754 521.65 30.00 31.85 -1.85 Before
REGRESSION.HCC1395_tumor.L001 AGA Context Base Insertion 152328 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGA Context Base Deletion 152328 4.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGC Context Base Insertion 140939 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGC Context Base Deletion 140939 3.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGG Context Base Insertion 164284 4.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGG Context Base Deletion 164284 3.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGT Context Base Insertion 103827 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AGT Context Base Deletion 103827 5.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 AT Context Base Substitution 370416 470.28 29.00 32.20 -3.20 Before
REGRESSION.HCC1395_tumor.L001 ATA Context Base Insertion 74572 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATA Context Base Deletion 74572 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATC Context Base Insertion 79006 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATC Context Base Deletion 79006 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATG Context Base Insertion 115535 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATG Context Base Deletion 115535 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATT Context Base Insertion 109130 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 ATT Context Base Deletion 109130 2.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CA Context Base Substitution 598019 1228.15 27.00 30.04 -3.04 Before
REGRESSION.HCC1395_tumor.L001 CAA Context Base Insertion 113330 4.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAA Context Base Deletion 113330 4.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAC Context Base Insertion 125763 5.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAC Context Base Deletion 125763 5.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAG Context Base Insertion 214619 5.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAG Context Base Deletion 214619 9.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAT Context Base Insertion 111679 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CAT Context Base Deletion 111679 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CC Context Base Substitution 554237 1754.96 25.00 28.98 -3.98 Before
REGRESSION.HCC1395_tumor.L001 CCA Context Base Insertion 177783 2.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCA Context Base Deletion 177783 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCC Context Base Insertion 152202 5.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCC Context Base Deletion 152202 5.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCG Context Base Insertion 36858 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCG Context Base Deletion 36858 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCT Context Base Insertion 179188 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CCT Context Base Deletion 179188 5.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CG Context Base Substitution 112314 355.84 26.00 29.93 -3.93 Before
REGRESSION.HCC1395_tumor.L001 CGA Context Base Insertion 44528 3.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGA Context Base Deletion 44528 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGC Context Base Insertion 63556 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGC Context Base Deletion 63556 2.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGG Context Base Insertion 76882 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGG Context Base Deletion 76882 3.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGT Context Base Insertion 49751 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CGT Context Base Deletion 49751 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CT Context Base Substitution 599626 441.12 31.00 32.53 -1.53 Before
REGRESSION.HCC1395_tumor.L001 CTA Context Base Insertion 58647 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTA Context Base Deletion 58647 3.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTC Context Base Insertion 146290 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTC Context Base Deletion 146290 9.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTG Context Base Insertion 215192 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTG Context Base Deletion 215192 5.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTT Context Base Insertion 147509 2.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 CTT Context Base Deletion 147509 4.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GA Context Base Substitution 498067 808.29 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 GAA Context Base Insertion 142549 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAA Context Base Deletion 142549 3.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAC Context Base Insertion 84270 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAC Context Base Deletion 84270 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAG Context Base Insertion 150115 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAG Context Base Deletion 150115 3.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAT Context Base Insertion 83421 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GAT Context Base Deletion 83421 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GC Context Base Substitution 490049 1083.33 27.00 30.33 -3.33 Before
REGRESSION.HCC1395_tumor.L001 GCA Context Base Insertion 149566 2.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCA Context Base Deletion 149566 3.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCC Context Base Insertion 147291 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCC Context Base Deletion 147291 5.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCG Context Base Insertion 35741 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCG Context Base Deletion 35741 1.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCT Context Base Insertion 156584 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GCT Context Base Deletion 156584 2.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GG Context Base Substitution 579152 760.19 29.00 31.76 -2.76 Before
REGRESSION.HCC1395_tumor.L001 GGA Context Base Insertion 157155 2.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGA Context Base Deletion 157155 5.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGC Context Base Insertion 145389 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGC Context Base Deletion 145389 5.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGG Context Base Insertion 158666 3.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGG Context Base Deletion 158666 11.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGT Context Base Insertion 115620 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GGT Context Base Deletion 115620 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GT Context Base Substitution 411941 695.35 28.00 32.26 -4.26 Before
REGRESSION.HCC1395_tumor.L001 GTA Context Base Insertion 66830 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTA Context Base Deletion 66830 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTC Context Base Insertion 92043 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTC Context Base Deletion 92043 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTG Context Base Insertion 140834 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTG Context Base Deletion 140834 10.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTT Context Base Insertion 100388 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 GTT Context Base Deletion 100388 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TA Context Base Substitution 289590 783.50 26.00 29.83 -3.83 Before
REGRESSION.HCC1395_tumor.L001 TAA Context Base Insertion 87925 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAA Context Base Deletion 87925 4.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAC Context Base Insertion 60429 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAC Context Base Deletion 60429 3.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAG Context Base Insertion 60247 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAG Context Base Deletion 60247 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAT Context Base Insertion 70770 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TAT Context Base Deletion 70770 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TC Context Base Substitution 450890 1002.62 27.00 30.54 -3.54 Before
REGRESSION.HCC1395_tumor.L001 TCA Context Base Insertion 132896 2.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCA Context Base Deletion 132896 5.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCC Context Base Insertion 145941 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCC Context Base Deletion 145941 3.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCG Context Base Insertion 18337 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCG Context Base Deletion 18337 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCT Context Base Insertion 154245 2.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TCT Context Base Deletion 154245 5.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TG Context Base Substitution 590715 458.24 31.00 31.86 -0.86 Before
REGRESSION.HCC1395_tumor.L001 TGA Context Base Insertion 140128 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGA Context Base Deletion 140128 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGC Context Base Insertion 136971 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGC Context Base Deletion 136971 2.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGG Context Base Insertion 175036 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGG Context Base Deletion 175036 6.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGT Context Base Insertion 140067 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TGT Context Base Deletion 140067 7.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TT Context Base Substitution 539885 698.63 29.00 32.87 -3.87 Before
REGRESSION.HCC1395_tumor.L001 TTA Context Base Insertion 87285 2.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTA Context Base Deletion 87285 4.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTC Context Base Insertion 130916 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTC Context Base Deletion 130916 5.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTG Context Base Insertion 114910 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTG Context Base Deletion 114910 2.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 TTT Context Base Insertion 179211 22.28 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 TTT Context Base Deletion 179211 54.52 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L001 -1 Cycle Base Substitution 26809 89.72 25.00 26.02 -1.02 Before
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Substitution 27018 42.45 31.00 32.19 -1.19 Before
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Insertion 27018 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Deletion 27018 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Substitution 25058 39.57 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Insertion 24821 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Deletion 24821 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Substitution 24966 54.37 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Insertion 24725 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Deletion 24725 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Substitution 24888 54.42 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Insertion 24628 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Deletion 24628 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Substitution 24721 49.33 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Insertion 24461 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Deletion 24461 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Substitution 24692 39.27 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Insertion 24405 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Deletion 24405 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Substitution 24600 47.13 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Insertion 24306 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Deletion 24306 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Substitution 24652 46.46 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Insertion 24378 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Deletion 24378 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Substitution 24471 43.68 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Insertion 24204 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Deletion 24204 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Substitution 24464 48.24 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Insertion 24191 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Deletion 24191 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Substitution 24388 41.50 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Insertion 24132 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Deletion 24132 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Substitution 27067 44.10 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Insertion 27067 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Deletion 27067 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Substitution 24389 50.41 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Insertion 24103 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Deletion 24103 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Substitution 24279 44.56 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Insertion 23974 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Deletion 23974 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Substitution 24269 36.00 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Insertion 23965 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Deletion 23965 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Substitution 24185 27.69 30.00 30.33 -0.33 Before
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Insertion 23892 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Deletion 23892 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Substitution 24120 38.92 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Insertion 23845 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Deletion 23845 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Substitution 24125 52.23 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Insertion 23850 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Deletion 23850 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Substitution 23929 47.00 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Insertion 23654 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Deletion 23654 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Substitution 23849 49.31 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Insertion 23559 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Deletion 23559 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Substitution 23867 37.99 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Insertion 23552 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Deletion 23552 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Substitution 23759 48.25 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Insertion 23446 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Deletion 23446 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Substitution 27029 31.88 30.00 31.97 -1.97 Before
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Insertion 27029 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Deletion 27029 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Substitution 23672 54.35 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Insertion 23382 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Deletion 23382 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Substitution 23715 56.61 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Insertion 23422 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Deletion 23422 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Substitution 23537 44.74 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Insertion 23263 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Deletion 23263 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Substitution 23498 59.95 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Insertion 23210 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Deletion 23210 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Substitution 23452 37.41 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Insertion 23135 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Deletion 23135 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Substitution 23367 49.66 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Insertion 23058 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Deletion 23058 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Substitution 23346 46.51 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Insertion 23030 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Deletion 23030 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Substitution 23351 54.12 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Insertion 23044 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Deletion 23044 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Substitution 23160 47.33 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Insertion 22852 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Deletion 22852 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Substitution 23103 57.60 28.00 30.04 -2.04 Before
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Insertion 22804 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Deletion 22804 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Substitution 27018 39.89 30.00 31.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Insertion 27018 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Deletion 27018 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Substitution 23065 33.44 30.00 30.07 -0.07 Before
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Insertion 22745 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Deletion 22745 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Substitution 22983 41.92 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Insertion 22647 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Deletion 22647 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Substitution 22962 43.59 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Insertion 22613 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Deletion 22613 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Substitution 22827 43.36 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Insertion 22476 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Deletion 22476 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Substitution 22704 35.10 29.00 29.88 -0.88 Before
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Insertion 22368 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Deletion 22368 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Substitution 22646 49.39 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Insertion 22306 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Deletion 22306 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Substitution 22531 47.28 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Insertion 22181 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Deletion 22181 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Substitution 22420 35.82 29.00 29.59 -0.59 Before
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Insertion 22064 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Deletion 22064 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Substitution 22391 36.64 29.00 29.85 -0.85 Before
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Insertion 22004 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Deletion 22004 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Substitution 22345 48.11 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Insertion 21966 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Deletion 21966 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Substitution 27029 45.08 30.00 31.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Insertion 27029 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Deletion 27029 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Substitution 22329 34.37 29.00 29.87 -0.87 Before
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Insertion 21918 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Deletion 21918 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Substitution 22195 28.54 29.00 29.68 -0.68 Before
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Insertion 21769 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Deletion 21769 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Substitution 22102 30.00 29.00 29.80 -0.80 Before
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Insertion 21661 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Deletion 21661 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Substitution 21923 31.13 29.00 29.91 -0.91 Before
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Insertion 21475 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Deletion 21475 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Substitution 21848 35.39 29.00 29.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Insertion 21384 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Deletion 21384 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Substitution 21755 39.02 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Insertion 16718 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Deletion 16718 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Substitution 21674 65.14 27.00 29.98 -2.98 Before
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Insertion 16646 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Deletion 16646 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -147 Cycle Base Substitution 21534 223.59 23.00 30.17 -7.17 Before
REGRESSION.HCC1395_tumor.L001 -148 Cycle Base Substitution 21357 857.24 15.00 30.31 -15.31 Before
REGRESSION.HCC1395_tumor.L001 -149 Cycle Base Substitution 13322 779.46 14.00 30.98 -16.98 Before
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Substitution 26931 31.78 31.00 32.06 -1.06 Before
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Insertion 26931 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Deletion 26931 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -150 Cycle Base Substitution 4686 7.51 30.00 30.52 -0.52 Before
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Substitution 26942 40.78 30.00 31.71 -1.71 Before
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Insertion 26942 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Deletion 26942 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Substitution 27013 41.70 30.00 31.79 -1.79 Before
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Insertion 27013 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Deletion 27013 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Substitution 27031 29.31 31.00 32.09 -1.09 Before
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Insertion 27031 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Deletion 27031 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Substitution 26858 38.39 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Insertion 26858 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Deletion 26858 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -2 Cycle Base Substitution 27217 72.88 27.00 28.66 -1.66 Before
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Substitution 27002 36.20 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Insertion 27002 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Deletion 27002 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Substitution 26895 35.45 31.00 32.18 -1.18 Before
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Insertion 26895 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Deletion 26895 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Substitution 26936 40.89 31.00 32.17 -1.17 Before
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Insertion 26936 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Deletion 26936 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Substitution 26881 31.70 31.00 32.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Insertion 26881 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Deletion 26881 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Substitution 26890 38.88 30.00 31.98 -1.98 Before
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Insertion 26890 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Deletion 26890 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Substitution 26894 35.58 30.00 31.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Insertion 26894 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Deletion 26894 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Substitution 26762 35.20 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Insertion 26762 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Deletion 26762 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Substitution 26878 32.44 30.00 30.17 -0.17 Before
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Insertion 26878 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Deletion 26878 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Substitution 26924 46.56 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Insertion 26924 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Deletion 26924 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Substitution 26893 27.65 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Insertion 26893 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Deletion 26893 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -3 Cycle Base Substitution 27283 69.02 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Substitution 26839 47.20 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Insertion 26838 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Deletion 26838 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Substitution 26844 37.40 30.00 30.49 -0.49 Before
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Insertion 26843 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Deletion 26843 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Substitution 26759 39.56 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Insertion 26758 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Deletion 26758 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Substitution 26813 31.97 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Insertion 26812 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Deletion 26812 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Substitution 26782 29.19 30.00 30.80 -0.80 Before
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Insertion 26781 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Deletion 26781 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Substitution 26734 35.06 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Insertion 26733 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Deletion 26733 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Substitution 26822 38.44 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Insertion 26822 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Deletion 26822 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Substitution 26795 30.93 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Insertion 26794 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Deletion 26794 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Substitution 26671 41.90 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Insertion 26669 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Deletion 26669 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Substitution 26713 36.37 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Insertion 26712 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Deletion 26712 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -4 Cycle Base Substitution 27135 63.05 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Substitution 26696 32.72 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Insertion 26695 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Deletion 26695 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Substitution 26637 29.91 30.00 30.62 -0.62 Before
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Insertion 26634 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Deletion 26634 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Substitution 26733 33.97 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Insertion 26729 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Deletion 26729 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Substitution 26762 32.28 30.00 30.66 -0.66 Before
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Insertion 26756 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Deletion 26756 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Substitution 26773 37.66 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Insertion 26765 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Deletion 26765 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Substitution 26746 38.22 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Insertion 26736 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Deletion 26736 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Substitution 26691 34.15 30.00 30.95 -0.95 Before
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Insertion 26683 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Deletion 26683 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Substitution 26625 39.19 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Insertion 26619 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Deletion 26619 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Substitution 26558 34.73 30.00 30.89 -0.89 Before
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Insertion 26549 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Deletion 26549 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Substitution 26660 32.84 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Insertion 26646 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Deletion 26646 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Substitution 27148 38.80 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Insertion 27148 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Deletion 27148 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Substitution 26689 43.30 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Insertion 26670 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Deletion 26670 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Substitution 26761 47.17 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Insertion 26744 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Deletion 26744 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Substitution 26616 45.96 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Insertion 26599 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Deletion 26599 3.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Substitution 26642 42.79 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Insertion 26625 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Deletion 26625 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Substitution 26572 43.33 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Insertion 26554 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Deletion 26554 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Substitution 26698 52.60 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Insertion 26675 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Deletion 26675 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Substitution 26463 49.60 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Insertion 26435 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Deletion 26435 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Substitution 26591 38.76 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Insertion 26546 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Deletion 26546 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Substitution 26571 28.50 30.00 30.91 -0.91 Before
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Insertion 26529 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Deletion 26529 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Substitution 26520 45.41 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Insertion 26459 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Deletion 26459 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Substitution 26933 44.52 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Insertion 26933 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Deletion 26933 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Substitution 26487 44.40 29.00 30.91 -1.91 Before
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Insertion 26430 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Deletion 26430 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Substitution 26349 47.74 29.00 30.70 -1.70 Before
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Insertion 26290 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Deletion 26290 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Substitution 26569 42.12 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Insertion 26505 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Deletion 26505 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Substitution 26427 28.00 31.00 31.02 -0.02 Before
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Insertion 26371 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Deletion 26371 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Substitution 26292 28.65 31.00 31.06 -0.06 Before
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Insertion 26227 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Deletion 26227 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Substitution 26326 42.82 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Insertion 26253 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Deletion 26253 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Substitution 26385 42.50 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Insertion 26297 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Deletion 26297 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Substitution 26330 34.84 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Insertion 26239 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Deletion 26239 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Substitution 26229 41.15 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Insertion 26136 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Deletion 26136 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Substitution 26305 40.02 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Insertion 26213 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Deletion 26213 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Substitution 27067 51.86 29.00 30.83 -1.83 Before
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Insertion 27067 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Deletion 27067 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Substitution 26223 30.88 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Insertion 26136 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Deletion 26136 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Substitution 26239 47.09 29.00 30.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Insertion 26135 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Deletion 26135 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Substitution 26183 38.48 29.00 30.86 -1.86 Before
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Insertion 26076 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Deletion 26076 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Substitution 26140 50.05 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Insertion 26023 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Deletion 26023 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Substitution 26153 44.59 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Insertion 26029 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Deletion 26029 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Substitution 26143 51.60 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Insertion 26013 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Deletion 26013 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Substitution 26048 42.39 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Insertion 25914 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Deletion 25914 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Substitution 26044 32.46 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Insertion 25906 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Deletion 25906 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Substitution 25953 38.08 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Insertion 25796 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Deletion 25796 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Substitution 25987 37.60 29.00 30.91 -1.91 Before
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Insertion 25818 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Deletion 25818 2.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Substitution 27074 43.12 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Insertion 27074 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Deletion 27074 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Substitution 25913 35.41 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Insertion 25764 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Deletion 25764 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Substitution 25853 33.72 30.00 30.77 -0.77 Before
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Insertion 25687 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Deletion 25687 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Substitution 25886 52.34 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Insertion 25718 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Deletion 25718 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Substitution 25695 46.64 29.00 30.91 -1.91 Before
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Insertion 25524 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Deletion 25524 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Substitution 25765 41.79 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Insertion 25598 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Deletion 25598 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Substitution 25698 46.34 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Insertion 25501 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Deletion 25501 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Substitution 25628 48.36 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Insertion 25456 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Deletion 25456 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Substitution 25558 49.72 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Insertion 25361 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Deletion 25361 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Substitution 25504 47.66 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Insertion 25324 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Deletion 25324 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Substitution 25562 47.53 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Insertion 25382 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Deletion 25382 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Substitution 27194 38.74 30.00 31.17 -1.17 Before
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Insertion 27194 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Deletion 27194 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Substitution 25520 49.21 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Insertion 25317 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Deletion 25317 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Substitution 25404 42.66 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Insertion 25208 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Deletion 25208 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Substitution 25403 34.08 30.00 30.99 -0.99 Before
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Insertion 25185 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Deletion 25185 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Substitution 25241 45.57 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Insertion 25021 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Deletion 25021 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Substitution 25443 41.85 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Insertion 25212 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Deletion 25212 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Substitution 25215 40.99 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Insertion 24960 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Deletion 24960 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Substitution 25252 50.05 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Insertion 24984 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Deletion 24984 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Substitution 25132 42.10 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Insertion 24887 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Deletion 24887 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Substitution 25048 55.11 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Insertion 24818 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Deletion 24818 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Substitution 25041 43.56 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Insertion 24809 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Deletion 24809 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 1 Cycle Base Substitution 26806 58.08 27.00 28.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Substitution 27128 32.21 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Insertion 27128 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Deletion 27128 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Substitution 25028 41.70 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Insertion 24786 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Deletion 24786 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Substitution 24904 31.35 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Insertion 24643 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Deletion 24643 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Substitution 24764 54.90 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Insertion 24496 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Deletion 24496 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Substitution 24709 35.68 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Insertion 24434 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Deletion 24434 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Substitution 24762 32.25 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Insertion 24484 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Deletion 24484 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Substitution 24658 39.11 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Insertion 24370 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Deletion 24370 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Substitution 24504 49.48 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Insertion 24225 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Deletion 24225 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Substitution 24602 43.24 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Insertion 24335 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Deletion 24335 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Substitution 24463 54.89 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Insertion 24182 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Deletion 24182 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Substitution 24376 39.72 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Insertion 24111 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Deletion 24111 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Substitution 27044 32.57 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Insertion 27044 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Deletion 27044 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Substitution 24323 36.74 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Insertion 24034 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Deletion 24034 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Substitution 24212 39.88 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Insertion 23920 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Deletion 23920 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Substitution 24270 50.86 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Insertion 23983 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Deletion 23983 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Substitution 24278 43.28 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Insertion 23972 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Deletion 23972 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Substitution 23998 50.38 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Insertion 23725 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Deletion 23725 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Substitution 24077 40.32 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Insertion 23800 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Deletion 23800 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Substitution 23973 37.77 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Insertion 23679 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Deletion 23679 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Substitution 23846 48.15 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Insertion 23557 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Deletion 23557 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Substitution 23819 37.10 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Insertion 23522 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Deletion 23522 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Substitution 23760 38.32 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Insertion 23458 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Deletion 23458 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Substitution 27071 30.18 31.00 31.07 -0.07 Before
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Insertion 27071 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Deletion 27071 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Substitution 23737 42.45 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Insertion 23442 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Deletion 23442 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Substitution 23619 46.71 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Insertion 23348 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Deletion 23348 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Substitution 23564 48.63 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Insertion 23281 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Deletion 23281 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Substitution 23555 27.55 30.00 30.23 -0.23 Before
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Insertion 23252 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Deletion 23252 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Substitution 23521 34.65 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Insertion 23205 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Deletion 23205 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Substitution 23398 44.87 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Insertion 23087 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Deletion 23087 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Substitution 23250 41.14 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Insertion 22937 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Deletion 22937 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Substitution 23287 35.93 29.00 29.99 -0.99 Before
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Insertion 22985 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Deletion 22985 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Substitution 23174 45.86 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Insertion 22857 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Deletion 22857 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Substitution 23156 38.07 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Insertion 22860 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Deletion 22860 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Substitution 27031 28.90 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Insertion 27031 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Deletion 27031 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Substitution 22948 47.10 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Insertion 22634 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Deletion 22634 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Substitution 22868 43.90 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Insertion 22535 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Deletion 22535 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Substitution 22821 42.44 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Insertion 22482 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Deletion 22482 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Substitution 22795 39.90 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Insertion 22470 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Deletion 22470 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Substitution 22695 43.25 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Insertion 22368 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Deletion 22368 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Substitution 22603 44.00 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Insertion 22276 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Deletion 22276 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Substitution 22463 27.31 30.00 30.39 -0.39 Before
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Insertion 22139 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Deletion 22139 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Substitution 22527 44.64 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Insertion 22204 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Deletion 22204 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Substitution 22383 45.44 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Insertion 22025 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Deletion 22025 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Substitution 22288 49.19 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Insertion 21940 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Deletion 21940 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Substitution 27061 29.54 31.00 31.24 -0.24 Before
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Insertion 27061 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Deletion 27061 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Substitution 22204 46.92 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Insertion 21846 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Deletion 21846 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Substitution 22262 27.65 29.00 29.89 -0.89 Before
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Insertion 21902 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Deletion 21902 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Substitution 21981 45.34 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Insertion 21620 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Deletion 21620 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Substitution 22028 54.15 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Insertion 21668 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Deletion 21668 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Substitution 21932 38.95 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Insertion 21588 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Deletion 21588 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Substitution 21778 39.92 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Insertion 21432 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Deletion 21432 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Substitution 21779 40.07 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Insertion 21459 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Deletion 21459 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 147 Cycle Base Substitution 21625 41.80 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 148 Cycle Base Substitution 21591 44.14 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L001 149 Cycle Base Substitution 21521 38.09 29.00 29.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Substitution 27055 29.21 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Insertion 27055 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Deletion 27055 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 150 Cycle Base Substitution 21371 36.13 29.00 29.95 -0.95 Before
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Substitution 26926 23.88 32.00 32.89 -0.89 Before
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Insertion 26926 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Deletion 26926 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Substitution 26788 23.27 32.00 32.90 -0.90 Before
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Insertion 26788 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Deletion 26788 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Substitution 26919 28.33 32.00 33.04 -1.04 Before
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Insertion 26919 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Deletion 26919 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Substitution 27008 21.14 32.00 32.76 -0.76 Before
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Insertion 27008 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Deletion 27008 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 2 Cycle Base Substitution 27150 49.32 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Substitution 26895 24.77 32.00 33.02 -1.02 Before
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Insertion 26895 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Deletion 26895 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Substitution 26930 29.03 31.00 32.92 -1.92 Before
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Insertion 26930 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Deletion 26930 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Substitution 26909 20.40 33.00 33.02 -0.02 Before
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Insertion 26909 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Deletion 26909 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Substitution 26922 19.07 32.00 32.92 -0.92 Before
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Insertion 26922 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Deletion 26922 2.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Substitution 26917 20.24 33.00 33.05 -0.05 Before
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Insertion 26917 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Deletion 26917 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Substitution 26883 18.58 33.00 33.28 -0.28 Before
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Insertion 26883 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Deletion 26883 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Substitution 26980 33.62 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Insertion 26980 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Deletion 26980 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Substitution 26882 29.34 31.00 31.71 -0.71 Before
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Insertion 26882 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Deletion 26882 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Substitution 26920 35.43 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Insertion 26920 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Deletion 26920 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Substitution 26892 29.10 31.00 31.98 -0.98 Before
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Insertion 26892 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Deletion 26892 2.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 3 Cycle Base Substitution 27152 48.16 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Substitution 26891 31.57 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Insertion 26891 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Deletion 26891 2.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Substitution 26812 27.87 31.00 31.93 -0.93 Before
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Insertion 26812 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Deletion 26812 2.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Substitution 26853 39.61 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Insertion 26852 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Deletion 26852 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Substitution 26660 39.01 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Insertion 26659 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Deletion 26659 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Substitution 26844 32.03 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Insertion 26843 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Deletion 26843 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Substitution 26781 37.50 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Insertion 26779 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Deletion 26779 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Substitution 26860 34.74 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Insertion 26858 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Deletion 26858 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Substitution 26764 27.52 31.00 31.87 -0.87 Before
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Insertion 26762 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Deletion 26762 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Substitution 26845 36.85 30.00 31.82 -1.82 Before
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Insertion 26842 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Deletion 26842 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Substitution 26806 19.11 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Insertion 26805 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Deletion 26805 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 4 Cycle Base Substitution 27110 70.03 28.00 31.00 -3.00 Before
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Substitution 26890 30.43 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Insertion 26889 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Deletion 26889 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Substitution 26852 35.76 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Insertion 26850 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Deletion 26850 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Substitution 26724 38.41 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Insertion 26722 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Deletion 26722 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Substitution 26722 27.90 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Insertion 26716 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Deletion 26716 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Substitution 26834 20.26 31.00 31.60 -0.60 Before
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Insertion 26825 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Deletion 26825 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Substitution 26624 28.43 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Insertion 26616 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Deletion 26616 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Substitution 26688 26.08 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Insertion 26679 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Deletion 26679 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Substitution 26650 35.08 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Insertion 26644 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Deletion 26644 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Substitution 26711 33.34 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Insertion 26700 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Deletion 26700 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Substitution 26742 28.79 31.00 31.38 -0.38 Before
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Insertion 26728 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Deletion 26728 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Substitution 27114 37.96 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Insertion 27114 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Deletion 27114 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Substitution 26612 35.30 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Insertion 26590 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Deletion 26590 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Substitution 26615 37.65 30.00 31.32 -1.32 Before
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Insertion 26595 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Deletion 26595 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Substitution 26613 33.85 30.00 31.59 -1.59 Before
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Insertion 26595 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Deletion 26595 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Substitution 26690 38.99 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Insertion 26669 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Deletion 26669 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Substitution 26601 33.70 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Insertion 26579 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Deletion 26579 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Substitution 26624 29.69 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Insertion 26600 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Deletion 26600 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Substitution 26560 32.02 30.00 31.31 -1.31 Before
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Insertion 26525 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Deletion 26525 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Substitution 26623 49.39 30.00 31.17 -1.17 Before
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Insertion 26582 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Deletion 26582 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Substitution 26552 36.30 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Insertion 26507 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Deletion 26507 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Substitution 26563 26.50 31.00 31.32 -0.32 Before
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Insertion 26503 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Deletion 26503 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Substitution 27052 41.21 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Insertion 27052 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Deletion 27052 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Substitution 26538 37.54 30.00 31.36 -1.36 Before
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Insertion 26480 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Deletion 26480 2.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Substitution 26537 35.16 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Insertion 26480 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Deletion 26480 2.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Substitution 26565 35.06 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Insertion 26506 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Deletion 26506 2.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Substitution 26453 45.89 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Insertion 26390 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Deletion 26390 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Substitution 26527 33.03 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Insertion 26453 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Deletion 26453 2.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Substitution 26365 40.55 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Insertion 26294 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Deletion 26294 2.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Substitution 26307 35.84 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Insertion 26220 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Deletion 26220 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Substitution 26439 39.14 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Insertion 26348 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Deletion 26348 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Substitution 26400 40.12 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Insertion 26304 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Deletion 26304 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Substitution 26288 35.38 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Insertion 26186 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Deletion 26186 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Substitution 27111 29.58 31.00 31.10 -0.10 Before
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Insertion 27111 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Deletion 27111 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Substitution 26309 33.35 30.00 31.78 -1.78 Before
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Insertion 26214 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Deletion 26214 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Substitution 26182 34.03 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Insertion 26079 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Deletion 26079 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Substitution 26121 36.50 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Insertion 26015 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Deletion 26015 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Substitution 26200 44.05 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Insertion 26075 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Deletion 26075 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Substitution 26138 41.76 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Insertion 26016 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Deletion 26016 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Substitution 26132 41.28 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Insertion 26001 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Deletion 26001 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Substitution 26179 33.45 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Insertion 26038 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Deletion 26038 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Substitution 26062 40.73 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Insertion 25923 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Deletion 25923 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Substitution 25906 37.17 29.00 30.95 -1.95 Before
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Insertion 25746 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Deletion 25746 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Substitution 25880 42.90 29.00 30.95 -1.95 Before
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Insertion 25707 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Deletion 25707 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Substitution 27096 30.91 31.00 31.57 -0.57 Before
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Insertion 27096 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Deletion 27096 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Substitution 25926 28.67 31.00 31.23 -0.23 Before
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Insertion 25756 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Deletion 25756 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Substitution 25853 39.65 29.00 30.94 -1.94 Before
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Insertion 25680 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Deletion 25680 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Substitution 25830 38.12 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Insertion 25652 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Deletion 25652 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Substitution 25847 46.78 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Insertion 25677 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Deletion 25677 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Substitution 25724 32.16 30.00 30.94 -0.94 Before
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Insertion 25533 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Deletion 25533 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Substitution 25742 31.64 30.00 31.16 -1.16 Before
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Insertion 25541 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Deletion 25541 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Substitution 25558 42.06 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Insertion 25381 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Deletion 25381 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Substitution 25570 39.92 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Insertion 25388 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Deletion 25388 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Substitution 25533 41.10 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Insertion 25350 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Deletion 25350 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Substitution 25563 40.80 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Insertion 25382 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Deletion 25382 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Substitution 27116 30.83 31.00 31.14 -0.14 Before
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Insertion 27116 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Deletion 27116 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Substitution 25570 44.87 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Insertion 25367 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Deletion 25367 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Substitution 25515 40.39 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Insertion 25321 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Deletion 25321 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Substitution 25509 42.28 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Insertion 25288 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Deletion 25288 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Substitution 25318 38.80 29.00 30.75 -1.75 Before
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Insertion 25084 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Deletion 25084 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Substitution 25356 44.12 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Insertion 25122 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Deletion 25122 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Substitution 25272 37.90 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Insertion 25021 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Deletion 25021 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Substitution 25217 47.96 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Insertion 24959 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Deletion 24959 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Substitution 25189 46.15 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Insertion 24941 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Deletion 24941 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Substitution 24984 43.90 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Insertion 24744 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Deletion 24744 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Substitution 24961 43.55 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Insertion 24735 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Deletion 24735 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 12 QualityScore Base Substitution 78651 7466.23 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L001 24 QualityScore Base Substitution 192910 793.67 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L001 40 QualityScore Base Substitution 7318099 5423.36 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L001 45 QualityScore Base Insertion 7589660 144.51 46.00 45.00 1.00 Before
REGRESSION.HCC1395_tumor.L001 45 QualityScore Base Deletion 7589660 357.93 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 AA Context Base Substitution 534162 1436.53 26.00 29.44 -3.44 Before
REGRESSION.HCC1395_tumor.L002 AAA Context Base Insertion 181761 30.44 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 AAA Context Base Deletion 181761 80.88 41.00 45.00 -4.00 Before
REGRESSION.HCC1395_tumor.L002 AAC Context Base Insertion 87019 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAC Context Base Deletion 87019 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAG Context Base Insertion 136429 3.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAG Context Base Deletion 136429 3.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAT Context Base Insertion 103666 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AAT Context Base Deletion 103666 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AC Context Base Substitution 361133 1226.59 25.00 28.65 -3.65 Before
REGRESSION.HCC1395_tumor.L002 ACA Context Base Insertion 133811 5.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACA Context Base Deletion 133811 7.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACC Context Base Insertion 105896 3.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACC Context Base Deletion 105896 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACG Context Base Insertion 20958 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACG Context Base Deletion 20958 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACT Context Base Insertion 106352 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ACT Context Base Deletion 106352 5.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AG Context Base Substitution 569734 566.90 30.00 31.69 -1.69 Before
REGRESSION.HCC1395_tumor.L002 AGA Context Base Insertion 155127 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGA Context Base Deletion 155127 3.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGC Context Base Insertion 141435 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGC Context Base Deletion 141435 4.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGG Context Base Insertion 165626 6.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGG Context Base Deletion 165626 3.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGT Context Base Insertion 103833 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AGT Context Base Deletion 103833 3.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 AT Context Base Substitution 377093 514.13 29.00 31.98 -2.98 Before
REGRESSION.HCC1395_tumor.L002 ATA Context Base Insertion 76411 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATA Context Base Deletion 76411 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATC Context Base Insertion 80727 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATC Context Base Deletion 80727 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATG Context Base Insertion 116607 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATG Context Base Deletion 116607 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATT Context Base Insertion 110423 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 ATT Context Base Deletion 110423 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CA Context Base Substitution 602469 1361.31 27.00 29.80 -2.80 Before
REGRESSION.HCC1395_tumor.L002 CAA Context Base Insertion 114285 2.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAA Context Base Deletion 114285 3.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAC Context Base Insertion 126918 7.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAC Context Base Deletion 126918 8.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAG Context Base Insertion 215655 5.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAG Context Base Deletion 215655 9.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAT Context Base Insertion 113116 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CAT Context Base Deletion 113116 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CC Context Base Substitution 557192 1738.38 25.00 28.93 -3.93 Before
REGRESSION.HCC1395_tumor.L002 CCA Context Base Insertion 178883 2.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCA Context Base Deletion 178883 2.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCC Context Base Insertion 152710 8.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCC Context Base Deletion 152710 8.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCG Context Base Insertion 37587 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCG Context Base Deletion 37587 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCT Context Base Insertion 179840 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CCT Context Base Deletion 179840 5.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CG Context Base Substitution 114306 356.48 26.00 29.67 -3.67 Before
REGRESSION.HCC1395_tumor.L002 CGA Context Base Insertion 44912 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGA Context Base Deletion 44912 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGC Context Base Insertion 64122 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGC Context Base Deletion 64122 3.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGG Context Base Insertion 77223 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGG Context Base Deletion 77223 3.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGT Context Base Insertion 49660 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CGT Context Base Deletion 49660 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CT Context Base Substitution 603788 462.65 31.00 32.32 -1.32 Before
REGRESSION.HCC1395_tumor.L002 CTA Context Base Insertion 59083 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTA Context Base Deletion 59083 4.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTC Context Base Insertion 148073 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTC Context Base Deletion 148073 7.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTG Context Base Insertion 216019 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTG Context Base Deletion 216019 7.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTT Context Base Insertion 148199 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 CTT Context Base Deletion 148199 4.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GA Context Base Substitution 503371 872.55 28.00 29.46 -1.46 Before
REGRESSION.HCC1395_tumor.L002 GAA Context Base Insertion 144080 2.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAA Context Base Deletion 144080 2.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAC Context Base Insertion 84290 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAC Context Base Deletion 84290 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAG Context Base Insertion 152668 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAG Context Base Deletion 152668 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAT Context Base Insertion 85099 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GAT Context Base Deletion 85099 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GC Context Base Substitution 493130 1197.64 26.00 30.10 -4.10 Before
REGRESSION.HCC1395_tumor.L002 GCA Context Base Insertion 151016 1.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCA Context Base Deletion 151016 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCC Context Base Insertion 148190 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCC Context Base Deletion 148190 6.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCG Context Base Insertion 36073 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCG Context Base Deletion 36073 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCT Context Base Insertion 157632 2.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GCT Context Base Deletion 157632 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GG Context Base Substitution 581763 763.70 29.00 31.63 -2.63 Before
REGRESSION.HCC1395_tumor.L002 GGA Context Base Insertion 158195 3.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGA Context Base Deletion 158195 5.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGC Context Base Insertion 146202 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGC Context Base Deletion 146202 3.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGG Context Base Insertion 158654 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGG Context Base Deletion 158654 7.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGT Context Base Insertion 116449 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GGT Context Base Deletion 116449 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GT Context Base Substitution 412543 725.93 28.00 31.95 -3.95 Before
REGRESSION.HCC1395_tumor.L002 GTA Context Base Insertion 66991 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTA Context Base Deletion 66991 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTC Context Base Insertion 91689 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTC Context Base Deletion 91689 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTG Context Base Insertion 141418 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTG Context Base Deletion 141418 8.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTT Context Base Insertion 101050 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 GTT Context Base Deletion 101050 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TA Context Base Substitution 293045 839.77 26.00 29.47 -3.47 Before
REGRESSION.HCC1395_tumor.L002 TAA Context Base Insertion 89310 2.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAA Context Base Deletion 89310 4.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAC Context Base Insertion 60501 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAC Context Base Deletion 60501 4.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAG Context Base Insertion 60545 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAG Context Base Deletion 60545 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAT Context Base Insertion 72420 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TAT Context Base Deletion 72420 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TC Context Base Substitution 454509 1107.32 26.00 30.41 -4.41 Before
REGRESSION.HCC1395_tumor.L002 TCA Context Base Insertion 133997 2.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCA Context Base Deletion 133997 4.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCC Context Base Insertion 146731 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCC Context Base Deletion 146731 3.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCG Context Base Insertion 18805 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCG Context Base Deletion 18805 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCT Context Base Insertion 155845 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TCT Context Base Deletion 155845 6.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TG Context Base Substitution 594650 467.64 31.00 31.68 -0.68 Before
REGRESSION.HCC1395_tumor.L002 TGA Context Base Insertion 141364 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGA Context Base Deletion 141364 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGC Context Base Insertion 138173 2.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGC Context Base Deletion 138173 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGG Context Base Insertion 176021 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGG Context Base Deletion 176021 4.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGT Context Base Insertion 139841 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TGT Context Base Deletion 139841 9.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TT Context Base Substitution 546178 691.92 29.00 32.84 -3.84 Before
REGRESSION.HCC1395_tumor.L002 TTA Context Base Insertion 88326 3.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTA Context Base Deletion 88326 3.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTC Context Base Insertion 131225 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTC Context Base Deletion 131225 4.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTG Context Base Insertion 116358 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTG Context Base Deletion 116358 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 TTT Context Base Insertion 182736 22.94 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 TTT Context Base Deletion 182736 55.79 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L002 -1 Cycle Base Substitution 27118 104.82 24.00 25.84 -1.84 Before
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Substitution 27271 39.38 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Insertion 27271 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Deletion 27271 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Substitution 25217 56.12 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Insertion 24961 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Deletion 24961 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Substitution 25170 43.03 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Insertion 24887 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Deletion 24887 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Substitution 25084 57.73 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Insertion 24821 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Deletion 24821 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Substitution 25024 49.82 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Insertion 24738 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Deletion 24738 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Substitution 25123 49.61 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Insertion 24830 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Deletion 24830 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Substitution 24984 39.89 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Insertion 24729 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Deletion 24729 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Substitution 24834 49.12 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Insertion 24588 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Deletion 24588 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Substitution 24810 45.91 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Insertion 24564 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Deletion 24564 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Substitution 24702 63.65 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Insertion 24461 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Deletion 24461 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Substitution 24632 34.15 30.00 30.23 -0.23 Before
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Insertion 24374 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Deletion 24374 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Substitution 27225 30.38 31.00 31.19 -0.19 Before
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Insertion 27225 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Deletion 27225 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Substitution 24642 57.58 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Insertion 24364 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Deletion 24364 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Substitution 24616 49.91 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Insertion 24357 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Deletion 24357 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Substitution 24492 56.96 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Insertion 24225 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Deletion 24225 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Substitution 24493 53.81 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Insertion 24250 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Deletion 24250 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Substitution 24372 50.03 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Insertion 24127 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Deletion 24127 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Substitution 24286 44.70 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Insertion 24030 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Deletion 24030 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Substitution 24395 49.24 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Insertion 24109 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Deletion 24109 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Substitution 24135 46.64 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Insertion 23835 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Deletion 23835 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Substitution 24129 47.35 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Insertion 23838 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Deletion 23838 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Substitution 24033 59.27 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Insertion 23726 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Deletion 23726 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Substitution 27346 36.41 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Insertion 27346 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Deletion 27346 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Substitution 23986 56.32 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Insertion 23716 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Deletion 23716 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Substitution 23947 51.86 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Insertion 23672 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Deletion 23672 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Substitution 23972 44.05 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Insertion 23671 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Deletion 23671 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Substitution 23900 47.66 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Insertion 23600 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Deletion 23600 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Substitution 23748 44.61 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Insertion 23465 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Deletion 23465 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Substitution 23665 44.74 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Insertion 23347 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Deletion 23347 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Substitution 23664 59.28 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Insertion 23357 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Deletion 23357 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Substitution 23452 59.44 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Insertion 23154 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Deletion 23154 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Substitution 23464 41.44 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Insertion 23147 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Deletion 23147 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Substitution 23368 45.71 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Insertion 23063 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Deletion 23063 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Substitution 27314 38.26 31.00 32.10 -1.10 Before
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Insertion 27314 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Deletion 27314 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Substitution 23349 42.60 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Insertion 23051 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Deletion 23051 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Substitution 23299 44.20 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Insertion 22993 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Deletion 22993 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Substitution 23265 54.71 28.00 29.32 -1.32 Before
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Insertion 22950 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Deletion 22950 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Substitution 23091 45.52 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Insertion 22771 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Deletion 22771 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Substitution 23074 46.19 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Insertion 22747 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Deletion 22747 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Substitution 22977 57.41 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Insertion 22648 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Deletion 22648 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Substitution 22860 37.84 29.00 29.78 -0.78 Before
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Insertion 22516 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Deletion 22516 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Substitution 22853 42.67 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Insertion 22505 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Deletion 22505 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Substitution 22751 56.82 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Insertion 22396 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Deletion 22396 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Substitution 22701 48.68 28.00 29.35 -1.35 Before
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Insertion 22320 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Deletion 22320 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Substitution 27289 39.41 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Insertion 27289 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Deletion 27289 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Substitution 22599 58.86 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Insertion 22202 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Deletion 22202 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Substitution 22656 46.03 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Insertion 22213 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Deletion 22213 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Substitution 22536 42.63 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Insertion 22043 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Deletion 22043 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Substitution 22335 30.82 29.00 29.95 -0.95 Before
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Insertion 21822 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Deletion 21822 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Substitution 22279 28.37 29.00 29.81 -0.81 Before
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Insertion 21759 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Deletion 21759 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Substitution 22205 44.92 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Insertion 17001 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Deletion 17001 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Substitution 21985 74.17 27.00 29.93 -2.93 Before
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Insertion 16911 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Deletion 16911 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -147 Cycle Base Substitution 21913 252.05 23.00 30.04 -7.04 Before
REGRESSION.HCC1395_tumor.L002 -148 Cycle Base Substitution 21718 887.32 15.00 29.99 -14.99 Before
REGRESSION.HCC1395_tumor.L002 -149 Cycle Base Substitution 13417 800.32 14.00 30.75 -16.75 Before
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Substitution 27282 46.94 30.00 31.59 -1.59 Before
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Insertion 27282 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Deletion 27282 2.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -150 Cycle Base Substitution 4745 8.16 30.00 30.50 -0.50 Before
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Substitution 27343 37.64 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Insertion 27343 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Deletion 27343 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Substitution 27321 49.36 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Insertion 27321 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Deletion 27321 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Substitution 27212 55.53 29.00 31.25 -2.25 Before
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Insertion 27212 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Deletion 27212 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Substitution 27258 38.60 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Insertion 27258 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Deletion 27258 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -2 Cycle Base Substitution 27470 78.87 27.00 28.32 -1.32 Before
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Substitution 27245 37.87 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Insertion 27245 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Deletion 27245 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Substitution 27191 45.17 30.00 31.94 -1.94 Before
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Insertion 27191 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Deletion 27191 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Substitution 27150 34.73 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Insertion 27150 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Deletion 27150 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Substitution 27267 33.67 30.00 31.45 -1.45 Before
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Insertion 27267 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Deletion 27267 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Substitution 27238 37.77 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Insertion 27238 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Deletion 27238 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Substitution 27203 36.73 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Insertion 27203 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Deletion 27203 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Substitution 27199 37.64 30.00 30.10 -0.10 Before
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Insertion 27199 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Deletion 27199 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Substitution 27186 30.05 30.00 30.58 -0.58 Before
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Insertion 27185 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Deletion 27185 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Substitution 27189 44.76 29.00 29.91 -0.91 Before
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Insertion 27188 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Deletion 27188 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Substitution 27232 41.27 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Insertion 27230 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Deletion 27230 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -3 Cycle Base Substitution 27497 75.95 27.00 29.62 -2.62 Before
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Substitution 27187 39.60 29.00 29.98 -0.98 Before
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Insertion 27185 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Deletion 27185 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Substitution 27081 45.31 29.00 29.99 -0.99 Before
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Insertion 27080 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Deletion 27080 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Substitution 27168 37.93 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Insertion 27167 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Deletion 27167 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Substitution 27080 44.50 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Insertion 27080 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Deletion 27080 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Substitution 27115 42.54 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Insertion 27114 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Deletion 27114 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Substitution 27090 46.74 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Insertion 27088 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Deletion 27088 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Substitution 27055 37.47 30.00 30.18 -0.18 Before
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Insertion 27054 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Deletion 27054 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Substitution 27053 38.45 30.00 30.13 -0.13 Before
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Insertion 27050 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Deletion 27050 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Substitution 27023 38.91 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Insertion 27020 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Deletion 27020 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Substitution 27075 52.45 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Insertion 27072 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Deletion 27072 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -4 Cycle Base Substitution 27431 78.63 27.00 29.78 -2.78 Before
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Substitution 27085 38.65 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Insertion 27083 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Deletion 27083 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Substitution 27011 37.01 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Insertion 27010 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Deletion 27010 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Substitution 26968 32.00 30.00 30.24 -0.24 Before
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Insertion 26967 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Deletion 26967 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Substitution 27042 48.46 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Insertion 27039 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Deletion 27039 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Substitution 26905 35.47 30.00 30.47 -0.47 Before
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Insertion 26901 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Deletion 26901 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Substitution 27066 35.37 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Insertion 27061 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Deletion 27061 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Substitution 26974 35.04 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Insertion 26967 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Deletion 26967 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Substitution 26943 34.03 30.00 30.53 -0.53 Before
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Insertion 26938 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Deletion 26938 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Substitution 26947 31.13 30.00 30.51 -0.51 Before
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Insertion 26938 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Deletion 26938 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Substitution 27020 40.38 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Insertion 27008 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Deletion 27008 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Substitution 27403 59.37 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Insertion 27403 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Deletion 27403 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Substitution 26853 43.42 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Insertion 26832 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Deletion 26832 2.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Substitution 26883 39.36 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Insertion 26858 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Deletion 26858 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Substitution 26921 44.84 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Insertion 26894 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Deletion 26894 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Substitution 26877 32.91 30.00 30.54 -0.54 Before
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Insertion 26847 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Deletion 26847 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Substitution 26864 46.68 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Insertion 26838 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Deletion 26838 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Substitution 26992 35.47 30.00 30.60 -0.60 Before
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Insertion 26960 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Deletion 26960 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Substitution 26891 45.11 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Insertion 26861 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Deletion 26861 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Substitution 26864 44.28 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Insertion 26822 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Deletion 26822 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Substitution 26910 40.22 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Insertion 26857 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Deletion 26857 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Substitution 26833 36.10 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Insertion 26774 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Deletion 26774 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Substitution 27335 50.09 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Insertion 27335 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Deletion 27335 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Substitution 26683 40.54 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Insertion 26620 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Deletion 26620 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Substitution 26889 45.20 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Insertion 26823 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Deletion 26823 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Substitution 26762 31.96 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Insertion 26700 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Deletion 26700 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Substitution 26712 35.47 30.00 30.73 -0.73 Before
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Insertion 26657 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Deletion 26657 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Substitution 26668 34.91 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Insertion 26600 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Deletion 26600 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Substitution 26551 41.28 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Insertion 26474 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Deletion 26474 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Substitution 26562 43.83 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Insertion 26487 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Deletion 26487 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Substitution 26596 37.50 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Insertion 26507 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Deletion 26507 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Substitution 26543 48.49 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Insertion 26455 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Deletion 26455 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Substitution 26540 36.50 30.00 30.49 -0.49 Before
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Insertion 26456 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Deletion 26456 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Substitution 27356 43.99 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Insertion 27356 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Deletion 27356 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Substitution 26533 44.47 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Insertion 26433 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Deletion 26433 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Substitution 26520 40.97 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Insertion 26410 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Deletion 26410 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Substitution 26541 45.00 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Insertion 26423 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Deletion 26423 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Substitution 26533 48.65 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Insertion 26418 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Deletion 26418 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Substitution 26373 47.03 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Insertion 26256 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Deletion 26256 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Substitution 26403 35.60 30.00 30.32 -0.32 Before
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Insertion 26274 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Deletion 26274 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Substitution 26314 47.38 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Insertion 26194 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Deletion 26194 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Substitution 26307 37.65 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Insertion 26177 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Deletion 26177 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Substitution 26344 45.89 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Insertion 26198 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Deletion 26198 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Substitution 26264 38.03 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Insertion 26114 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Deletion 26114 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Substitution 27223 39.46 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Insertion 27223 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Deletion 27223 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Substitution 26220 47.79 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Insertion 26055 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Deletion 26055 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Substitution 26191 44.30 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Insertion 26019 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Deletion 26019 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Substitution 26264 47.71 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Insertion 26084 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Deletion 26084 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Substitution 26074 44.08 29.00 30.70 -1.70 Before
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Insertion 25903 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Deletion 25903 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Substitution 26077 45.21 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Insertion 25904 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Deletion 25904 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Substitution 26027 29.87 30.00 30.17 -0.17 Before
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Insertion 25844 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Deletion 25844 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Substitution 26002 49.59 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Insertion 25822 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Deletion 25822 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Substitution 26028 36.68 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Insertion 25826 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Deletion 25826 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Substitution 25970 40.00 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Insertion 25760 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Deletion 25760 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Substitution 25898 46.81 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Insertion 25683 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Deletion 25683 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Substitution 27326 33.97 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Insertion 27326 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Deletion 27326 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Substitution 25677 60.74 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Insertion 25466 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Deletion 25466 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Substitution 25866 38.24 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Insertion 25656 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Deletion 25656 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Substitution 25769 61.43 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Insertion 25570 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Deletion 25570 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Substitution 25601 40.12 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Insertion 25391 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Deletion 25391 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Substitution 25626 59.36 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Insertion 25399 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Deletion 25399 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Substitution 25448 50.61 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Insertion 25227 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Deletion 25227 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Substitution 25446 45.94 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Insertion 25218 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Deletion 25218 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Substitution 25347 42.63 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Insertion 25122 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Deletion 25122 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Substitution 25342 49.09 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Insertion 25092 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Deletion 25092 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Substitution 25265 47.10 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Insertion 25015 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Deletion 25015 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 1 Cycle Base Substitution 26883 61.94 27.00 28.42 -1.42 Before
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Substitution 27161 39.12 30.00 31.12 -1.12 Before
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Insertion 27161 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Deletion 27161 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Substitution 25015 43.13 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Insertion 24758 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Deletion 24758 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Substitution 24945 47.51 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Insertion 24673 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Deletion 24673 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Substitution 24957 46.71 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Insertion 24703 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Deletion 24703 2.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Substitution 24829 37.99 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Insertion 24550 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Deletion 24550 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Substitution 24790 48.71 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Insertion 24510 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Deletion 24510 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Substitution 24718 39.37 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Insertion 24459 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Deletion 24459 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Substitution 24661 40.84 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Insertion 24401 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Deletion 24401 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Substitution 24657 51.08 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Insertion 24416 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Deletion 24416 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Substitution 24500 56.86 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Insertion 24264 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Deletion 24264 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Substitution 24501 43.73 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Insertion 24238 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Deletion 24238 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Substitution 27177 33.32 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Insertion 27177 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Deletion 27177 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Substitution 24499 45.36 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Insertion 24227 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Deletion 24227 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Substitution 24462 42.62 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Insertion 24202 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Deletion 24202 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Substitution 24278 41.49 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Insertion 24029 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Deletion 24029 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Substitution 24130 34.84 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Insertion 23900 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Deletion 23900 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Substitution 24239 43.12 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Insertion 23990 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Deletion 23990 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Substitution 24114 41.92 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Insertion 23865 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Deletion 23865 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Substitution 23970 51.13 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Insertion 23686 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Deletion 23686 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Substitution 23995 56.50 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Insertion 23703 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Deletion 23703 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Substitution 23986 40.91 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Insertion 23685 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Deletion 23685 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Substitution 23890 40.39 29.00 29.92 -0.92 Before
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Insertion 23599 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Deletion 23599 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Substitution 27149 32.23 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Insertion 27149 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Deletion 27149 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Substitution 23777 42.22 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Insertion 23501 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Deletion 23501 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Substitution 23753 53.23 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Insertion 23490 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Deletion 23490 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Substitution 23622 39.11 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Insertion 23335 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Deletion 23335 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Substitution 23694 42.78 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Insertion 23418 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Deletion 23418 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Substitution 23626 59.01 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Insertion 23324 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Deletion 23324 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Substitution 23463 52.18 28.00 29.62 -1.62 Before
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Insertion 23151 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Deletion 23151 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Substitution 23430 50.71 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Insertion 23147 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Deletion 23147 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Substitution 23375 35.57 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Insertion 23074 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Deletion 23074 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Substitution 23187 49.68 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Insertion 22872 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Deletion 22872 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Substitution 23221 45.19 28.00 29.71 -1.71 Before
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Insertion 22917 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Deletion 22917 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Substitution 27163 30.81 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Insertion 27163 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Deletion 27163 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Substitution 23207 45.99 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Insertion 22924 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Deletion 22924 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Substitution 23110 56.84 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Insertion 22808 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Deletion 22808 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Substitution 22981 55.02 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Insertion 22678 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Deletion 22678 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Substitution 22979 57.03 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Insertion 22658 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Deletion 22658 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Substitution 22973 44.18 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Insertion 22647 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Deletion 22647 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Substitution 22863 40.84 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Insertion 22531 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Deletion 22531 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Substitution 22759 42.57 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Insertion 22436 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Deletion 22436 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Substitution 22692 43.86 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Insertion 22350 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Deletion 22350 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Substitution 22640 54.01 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Insertion 22309 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Deletion 22309 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Substitution 22605 72.68 27.00 29.66 -2.66 Before
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Insertion 22248 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Deletion 22248 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Substitution 27134 33.35 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Insertion 27134 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Deletion 27134 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Substitution 22437 49.72 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Insertion 22100 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Deletion 22100 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Substitution 22316 46.22 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Insertion 21973 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Deletion 21973 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Substitution 22293 53.59 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Insertion 21890 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Deletion 21890 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Substitution 22172 44.69 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Insertion 21767 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Deletion 21767 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Substitution 22125 47.07 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Insertion 21706 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Deletion 21706 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Substitution 21999 35.92 29.00 29.77 -0.77 Before
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Insertion 21593 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Deletion 21593 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Substitution 21884 46.66 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Insertion 21526 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Deletion 21526 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 147 Cycle Base Substitution 21862 53.21 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L002 148 Cycle Base Substitution 21786 55.13 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L002 149 Cycle Base Substitution 21698 46.23 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Substitution 27107 29.29 31.00 31.59 -0.59 Before
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Insertion 27107 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Deletion 27107 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 150 Cycle Base Substitution 21511 45.45 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Substitution 26988 25.09 32.00 32.90 -0.90 Before
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Insertion 26988 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Deletion 26988 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Substitution 27082 31.08 31.00 32.32 -1.32 Before
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Insertion 27082 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Deletion 27082 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Substitution 27243 20.99 32.00 32.88 -0.88 Before
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Insertion 27243 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Deletion 27243 2.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Substitution 26961 20.75 33.00 33.00 -0.00 Before
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Insertion 26961 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Deletion 26961 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 2 Cycle Base Substitution 27337 55.19 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Substitution 26971 29.04 31.00 32.66 -1.66 Before
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Insertion 26971 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Deletion 26971 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Substitution 27043 21.84 32.00 32.47 -0.47 Before
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Insertion 27043 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Deletion 27043 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Substitution 27014 23.46 32.00 33.23 -1.23 Before
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Insertion 27014 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Deletion 27014 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Substitution 27039 22.78 32.00 32.82 -0.82 Before
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Insertion 27039 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Deletion 27039 2.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Substitution 26977 23.58 32.00 33.17 -1.17 Before
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Insertion 26977 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Deletion 26977 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Substitution 26975 26.45 32.00 32.89 -0.89 Before
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Insertion 26975 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Deletion 26975 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Substitution 27071 29.71 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Insertion 27071 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Deletion 27071 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Substitution 27016 31.62 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Insertion 27016 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Deletion 27016 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Substitution 27008 32.48 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Insertion 27008 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Deletion 27008 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Substitution 26951 27.94 31.00 31.21 -0.21 Before
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Insertion 26950 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Deletion 26950 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 3 Cycle Base Substitution 27498 61.55 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Substitution 26982 30.40 31.00 31.53 -0.53 Before
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Insertion 26980 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Deletion 26980 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Substitution 26982 33.28 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Insertion 26981 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Deletion 26981 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Substitution 27021 38.67 30.00 31.52 -1.52 Before
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Insertion 27020 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Deletion 27020 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Substitution 27005 33.70 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Insertion 27003 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Deletion 27003 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Substitution 26957 38.61 30.00 31.51 -1.51 Before
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Insertion 26955 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Deletion 26955 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Substitution 26969 35.82 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Insertion 26967 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Deletion 26967 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Substitution 26841 49.59 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Insertion 26838 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Deletion 26838 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Substitution 26960 29.76 31.00 31.86 -0.86 Before
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Insertion 26958 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Deletion 26958 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Substitution 26913 25.94 31.00 31.55 -0.55 Before
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Insertion 26911 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Deletion 26911 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Substitution 26884 36.43 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Insertion 26882 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Deletion 26882 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 4 Cycle Base Substitution 27287 57.56 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Substitution 27019 32.24 30.00 31.73 -1.73 Before
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Insertion 27016 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Deletion 27016 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Substitution 26835 38.99 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Insertion 26833 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Deletion 26833 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Substitution 26861 27.29 31.00 31.42 -0.42 Before
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Insertion 26860 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Deletion 26860 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Substitution 26723 33.91 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Insertion 26720 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Deletion 26720 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Substitution 26918 28.43 31.00 31.83 -0.83 Before
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Insertion 26914 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Deletion 26914 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Substitution 26848 33.75 30.00 31.31 -1.31 Before
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Insertion 26842 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Deletion 26842 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Substitution 26943 31.00 31.00 31.16 -0.16 Before
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Insertion 26936 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Deletion 26936 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Substitution 26848 42.04 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Insertion 26842 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Deletion 26842 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Substitution 26701 26.82 31.00 31.32 -0.32 Before
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Insertion 26691 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Deletion 26691 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Substitution 26708 28.60 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Insertion 26694 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Deletion 26694 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Substitution 27388 47.03 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Insertion 27388 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Deletion 27388 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Substitution 26774 34.72 30.00 31.77 -1.77 Before
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Insertion 26757 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Deletion 26757 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Substitution 26764 33.77 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Insertion 26740 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Deletion 26740 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Substitution 26699 32.74 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Insertion 26674 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Deletion 26674 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Substitution 26814 36.92 30.00 31.56 -1.56 Before
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Insertion 26783 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Deletion 26783 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Substitution 26826 39.23 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Insertion 26800 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Deletion 26800 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Substitution 26669 27.95 31.00 31.11 -0.11 Before
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Insertion 26638 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Deletion 26638 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Substitution 26589 38.59 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Insertion 26558 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Deletion 26558 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Substitution 26541 45.01 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Insertion 26501 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Deletion 26501 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Substitution 26663 29.92 31.00 31.19 -0.19 Before
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Insertion 26607 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Deletion 26607 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Substitution 26600 28.70 31.00 31.32 -0.32 Before
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Insertion 26545 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Deletion 26545 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Substitution 27274 30.62 31.00 31.15 -0.15 Before
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Insertion 27274 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Deletion 27274 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Substitution 26627 25.97 31.00 31.32 -0.32 Before
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Insertion 26565 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Deletion 26565 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Substitution 26585 29.12 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Insertion 26520 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Deletion 26520 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Substitution 26553 27.92 31.00 31.43 -0.43 Before
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Insertion 26486 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Deletion 26486 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Substitution 26557 45.59 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Insertion 26495 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Deletion 26495 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Substitution 26595 38.16 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Insertion 26528 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Deletion 26528 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Substitution 26519 34.13 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Insertion 26435 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Deletion 26435 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Substitution 26565 31.79 30.00 31.45 -1.45 Before
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Insertion 26487 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Deletion 26487 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Substitution 26510 44.19 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Insertion 26428 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Deletion 26428 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Substitution 26390 42.67 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Insertion 26302 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Deletion 26302 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Substitution 26380 28.60 31.00 31.25 -0.25 Before
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Insertion 26289 2.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Deletion 26289 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Substitution 27241 37.46 30.00 30.85 -0.85 Before
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Insertion 27241 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Deletion 27241 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Substitution 26441 42.42 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Insertion 26349 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Deletion 26349 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Substitution 26396 40.75 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Insertion 26290 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Deletion 26290 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Substitution 26390 37.10 30.00 30.99 -0.99 Before
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Insertion 26274 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Deletion 26274 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Substitution 26366 44.44 29.00 30.86 -1.86 Before
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Insertion 26250 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Deletion 26250 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Substitution 26301 44.71 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Insertion 26181 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Deletion 26181 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Substitution 26345 30.60 31.00 31.17 -0.17 Before
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Insertion 26211 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Deletion 26211 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Substitution 26209 30.99 31.00 31.07 -0.07 Before
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Insertion 26090 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Deletion 26090 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Substitution 26100 50.13 29.00 30.94 -1.94 Before
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Insertion 25973 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Deletion 25973 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Substitution 26083 38.94 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Insertion 25936 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Deletion 25936 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Substitution 26076 41.96 29.00 30.92 -1.92 Before
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Insertion 25925 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Deletion 25925 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Substitution 27254 23.81 31.00 31.29 -0.29 Before
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Insertion 27254 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Deletion 27254 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Substitution 25986 42.28 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Insertion 25818 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Deletion 25818 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Substitution 26008 38.32 29.00 30.98 -1.98 Before
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Insertion 25825 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Deletion 25825 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Substitution 25929 41.81 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Insertion 25765 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Deletion 25765 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Substitution 25866 34.80 30.00 30.82 -0.82 Before
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Insertion 25696 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Deletion 25696 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Substitution 25922 39.30 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Insertion 25764 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Deletion 25764 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Substitution 25819 40.84 29.00 30.88 -1.88 Before
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Insertion 25639 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Deletion 25639 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Substitution 25792 47.22 29.00 30.74 -1.74 Before
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Insertion 25613 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Deletion 25613 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Substitution 25870 41.81 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Insertion 25678 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Deletion 25678 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Substitution 25701 27.95 30.00 30.73 -0.73 Before
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Insertion 25492 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Deletion 25492 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Substitution 25617 36.39 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Insertion 25408 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Deletion 25408 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Substitution 27111 29.66 31.00 31.13 -0.13 Before
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Insertion 27111 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Deletion 27111 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Substitution 25589 37.47 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Insertion 25376 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Deletion 25376 2.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Substitution 25443 45.88 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Insertion 25240 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Deletion 25240 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Substitution 25474 42.54 29.00 30.74 -1.74 Before
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Insertion 25274 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Deletion 25274 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Substitution 25473 42.99 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Insertion 25256 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Deletion 25256 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Substitution 25380 49.82 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Insertion 25159 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Deletion 25159 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Substitution 25366 34.22 30.00 30.62 -0.62 Before
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Insertion 25154 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Deletion 25154 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Substitution 25313 39.65 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Insertion 25076 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Deletion 25076 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Substitution 25226 37.56 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Insertion 25002 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Deletion 25002 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Substitution 25116 34.48 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Insertion 24871 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Deletion 24871 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Substitution 25039 37.74 29.00 30.92 -1.92 Before
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Insertion 24792 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Deletion 24792 2.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 12 QualityScore Base Substitution 83458 8171.83 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L002 24 QualityScore Base Substitution 201537 782.66 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L002 40 QualityScore Base Substitution 7368077 5542.30 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L002 45 QualityScore Base Insertion 7653072 157.44 46.00 45.00 1.00 Before
REGRESSION.HCC1395_tumor.L002 45 QualityScore Base Deletion 7653072 354.01 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 AA Context Base Substitution 523184 1385.16 26.00 29.63 -3.63 Before
REGRESSION.HCC1395_tumor.L003 AAA Context Base Insertion 176774 22.61 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 AAA Context Base Deletion 176774 68.20 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L003 AAC Context Base Insertion 85410 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAC Context Base Deletion 85410 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAG Context Base Insertion 135213 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAG Context Base Deletion 135213 4.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAT Context Base Insertion 100348 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AAT Context Base Deletion 100348 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AC Context Base Substitution 359392 1112.34 25.00 28.74 -3.74 Before
REGRESSION.HCC1395_tumor.L003 ACA Context Base Insertion 133000 2.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACA Context Base Deletion 133000 6.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACC Context Base Insertion 105444 3.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACC Context Base Deletion 105444 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACG Context Base Insertion 20990 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACG Context Base Deletion 20990 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACT Context Base Insertion 105522 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ACT Context Base Deletion 105522 4.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AG Context Base Substitution 565219 554.52 30.00 31.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 AGA Context Base Insertion 152470 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGA Context Base Deletion 152470 5.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGC Context Base Insertion 141248 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGC Context Base Deletion 141248 3.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGG Context Base Insertion 165027 7.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGG Context Base Deletion 165027 4.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGT Context Base Insertion 103002 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AGT Context Base Deletion 103002 3.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 AT Context Base Substitution 369972 489.37 29.00 32.06 -3.06 Before
REGRESSION.HCC1395_tumor.L003 ATA Context Base Insertion 74766 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATA Context Base Deletion 74766 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATC Context Base Insertion 79616 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATC Context Base Deletion 79616 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATG Context Base Insertion 115011 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATG Context Base Deletion 115011 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATT Context Base Insertion 108028 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 ATT Context Base Deletion 108028 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CA Context Base Substitution 596771 1296.15 27.00 29.95 -2.95 Before
REGRESSION.HCC1395_tumor.L003 CAA Context Base Insertion 112300 3.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAA Context Base Deletion 112300 3.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAC Context Base Insertion 126338 4.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAC Context Base Deletion 126338 7.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAG Context Base Insertion 214648 5.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAG Context Base Deletion 214648 10.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAT Context Base Insertion 112109 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CAT Context Base Deletion 112109 2.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CC Context Base Substitution 557350 1766.52 25.00 28.86 -3.86 Before
REGRESSION.HCC1395_tumor.L003 CCA Context Base Insertion 177516 4.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCA Context Base Deletion 177516 2.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCC Context Base Insertion 153478 5.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCC Context Base Deletion 153478 8.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCG Context Base Insertion 38170 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCG Context Base Deletion 38170 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCT Context Base Insertion 179504 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CCT Context Base Deletion 179504 6.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CG Context Base Substitution 115571 360.08 26.00 29.59 -3.59 Before
REGRESSION.HCC1395_tumor.L003 CGA Context Base Insertion 44919 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGA Context Base Deletion 44919 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGC Context Base Insertion 64160 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGC Context Base Deletion 64160 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGG Context Base Insertion 78701 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGG Context Base Deletion 78701 4.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGT Context Base Insertion 49386 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CGT Context Base Deletion 49386 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CT Context Base Substitution 601565 424.71 32.00 32.46 -0.46 Before
REGRESSION.HCC1395_tumor.L003 CTA Context Base Insertion 59086 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTA Context Base Deletion 59086 3.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTC Context Base Insertion 147513 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTC Context Base Deletion 147513 8.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTG Context Base Insertion 215167 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTG Context Base Deletion 215167 6.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTT Context Base Insertion 147528 4.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 CTT Context Base Deletion 147528 4.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GA Context Base Substitution 497674 858.84 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L003 GAA Context Base Insertion 141820 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAA Context Base Deletion 141820 2.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAC Context Base Insertion 84531 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAC Context Base Deletion 84531 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAG Context Base Insertion 150391 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAG Context Base Deletion 150391 3.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAT Context Base Insertion 84135 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GAT Context Base Deletion 84135 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GC Context Base Substitution 492485 1099.66 27.00 30.16 -3.16 Before
REGRESSION.HCC1395_tumor.L003 GCA Context Base Insertion 148858 2.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCA Context Base Deletion 148858 4.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCC Context Base Insertion 148132 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCC Context Base Deletion 148132 5.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCG Context Base Insertion 36602 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCG Context Base Deletion 36602 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCT Context Base Insertion 157264 3.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GCT Context Base Deletion 157264 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GG Context Base Substitution 582376 819.57 29.00 31.64 -2.64 Before
REGRESSION.HCC1395_tumor.L003 GGA Context Base Insertion 157312 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGA Context Base Deletion 157312 6.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGC Context Base Insertion 146872 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGC Context Base Deletion 146872 6.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGG Context Base Insertion 159819 4.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGG Context Base Deletion 159819 12.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGT Context Base Insertion 116024 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GGT Context Base Deletion 116024 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GT Context Base Substitution 410549 754.80 28.00 32.02 -4.02 Before
REGRESSION.HCC1395_tumor.L003 GTA Context Base Insertion 67063 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTA Context Base Deletion 67063 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTC Context Base Insertion 91750 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTC Context Base Deletion 91750 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTG Context Base Insertion 140738 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTG Context Base Deletion 140738 7.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTT Context Base Insertion 100040 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 GTT Context Base Deletion 100040 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TA Context Base Substitution 290071 815.41 26.00 29.78 -3.78 Before
REGRESSION.HCC1395_tumor.L003 TAA Context Base Insertion 87726 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAA Context Base Deletion 87726 3.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAC Context Base Insertion 60788 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAC Context Base Deletion 60788 3.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAG Context Base Insertion 60623 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAG Context Base Deletion 60623 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAT Context Base Insertion 70592 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TAT Context Base Deletion 70592 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TC Context Base Substitution 452144 1081.17 26.00 30.46 -4.46 Before
REGRESSION.HCC1395_tumor.L003 TCA Context Base Insertion 132707 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCA Context Base Deletion 132707 5.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCC Context Base Insertion 146486 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCC Context Base Deletion 146486 5.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCG Context Base Insertion 18892 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCG Context Base Deletion 18892 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCT Context Base Insertion 155146 2.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TCT Context Base Deletion 155146 6.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TG Context Base Substitution 589825 477.84 31.00 31.84 -0.84 Before
REGRESSION.HCC1395_tumor.L003 TGA Context Base Insertion 139118 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGA Context Base Deletion 139118 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGC Context Base Insertion 137002 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGC Context Base Deletion 137002 2.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGG Context Base Insertion 174621 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGG Context Base Deletion 174621 3.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGT Context Base Insertion 139388 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TGT Context Base Deletion 139388 6.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TT Context Base Substitution 539983 707.75 29.00 32.81 -3.81 Before
REGRESSION.HCC1395_tumor.L003 TTA Context Base Insertion 86943 2.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTA Context Base Deletion 86943 3.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTC Context Base Insertion 130515 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTC Context Base Deletion 130515 7.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTG Context Base Insertion 114702 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTG Context Base Deletion 114702 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 TTT Context Base Insertion 180687 26.91 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 TTT Context Base Deletion 180687 47.88 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L003 -1 Cycle Base Substitution 26756 78.81 25.00 25.89 -0.89 Before
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Substitution 26963 34.40 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Insertion 26963 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Deletion 26963 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Substitution 24922 56.20 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Insertion 24682 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Deletion 24682 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Substitution 24905 53.72 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Insertion 24654 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Deletion 24654 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Substitution 24772 52.65 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Insertion 24527 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Deletion 24527 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Substitution 24782 40.94 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Insertion 24530 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Deletion 24530 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Substitution 24690 45.65 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Insertion 24447 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Deletion 24447 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Substitution 24607 54.95 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Insertion 24347 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Deletion 24347 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Substitution 24531 52.56 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Insertion 24280 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Deletion 24280 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Substitution 24520 49.21 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Insertion 24266 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Deletion 24266 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Substitution 24481 48.35 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Insertion 24212 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Deletion 24212 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Substitution 24456 57.07 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Insertion 24180 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Deletion 24180 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Substitution 27049 28.26 31.00 31.87 -0.87 Before
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Insertion 27049 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Deletion 27049 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Substitution 24384 58.60 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Insertion 24110 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Deletion 24110 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Substitution 24263 55.40 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Insertion 23985 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Deletion 23985 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Substitution 24211 51.59 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Insertion 23936 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Deletion 23936 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Substitution 24186 52.09 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Insertion 23915 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Deletion 23915 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Substitution 24103 51.48 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Insertion 23840 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Deletion 23840 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Substitution 23946 50.84 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Insertion 23670 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Deletion 23670 2.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Substitution 24024 62.81 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Insertion 23759 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Deletion 23759 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Substitution 23809 55.69 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Insertion 23531 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Deletion 23531 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Substitution 23695 42.78 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Insertion 23405 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Deletion 23405 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Substitution 23721 47.61 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Insertion 23440 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Deletion 23440 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Substitution 27075 43.78 30.00 31.64 -1.64 Before
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Insertion 27075 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Deletion 27075 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Substitution 23700 51.04 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Insertion 23425 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Deletion 23425 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Substitution 23693 49.78 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Insertion 23397 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Deletion 23397 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Substitution 23574 57.90 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Insertion 23289 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Deletion 23289 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Substitution 23421 36.62 29.00 29.61 -0.61 Before
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Insertion 23121 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Deletion 23121 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Substitution 23318 55.39 28.00 29.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Insertion 23009 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Deletion 23009 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Substitution 23415 45.07 28.00 29.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Insertion 23092 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Deletion 23092 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Substitution 23360 50.09 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Insertion 23031 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Deletion 23031 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Substitution 23308 37.42 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Insertion 22983 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Deletion 22983 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Substitution 23194 54.04 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Insertion 22883 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Deletion 22883 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Substitution 23121 47.51 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Insertion 22805 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Deletion 22805 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Substitution 27061 36.75 30.00 31.90 -1.90 Before
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Insertion 27061 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Deletion 27061 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Substitution 23107 42.01 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Insertion 22796 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Deletion 22796 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Substitution 22972 42.22 28.00 29.33 -1.33 Before
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Insertion 22664 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Deletion 22664 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Substitution 22998 38.06 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Insertion 22663 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Deletion 22663 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Substitution 22871 52.81 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Insertion 22522 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Deletion 22522 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Substitution 22739 37.44 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Insertion 22394 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Deletion 22394 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Substitution 22745 57.16 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Insertion 22412 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Deletion 22412 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Substitution 22686 52.39 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Insertion 22319 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Deletion 22319 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Substitution 22612 52.89 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Insertion 22240 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Deletion 22240 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Substitution 22518 52.01 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Insertion 22139 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Deletion 22139 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Substitution 22344 42.58 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Insertion 21950 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Deletion 21950 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Substitution 27041 32.04 30.00 31.85 -1.85 Before
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Insertion 27041 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Deletion 27041 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Substitution 22235 41.85 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Insertion 21855 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Deletion 21855 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Substitution 22184 36.65 29.00 29.99 -0.99 Before
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Insertion 21779 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Deletion 21779 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Substitution 22164 34.78 29.00 29.84 -0.84 Before
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Insertion 21729 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Deletion 21729 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Substitution 22127 34.57 29.00 29.88 -0.88 Before
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Insertion 21676 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Deletion 21676 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Substitution 21866 36.24 29.00 29.97 -0.97 Before
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Insertion 21378 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Deletion 21378 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Substitution 21755 40.95 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Insertion 16720 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Deletion 16720 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Substitution 21651 74.38 27.00 29.88 -2.88 Before
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Insertion 16661 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Deletion 16661 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -147 Cycle Base Substitution 21556 233.66 23.00 30.20 -7.20 Before
REGRESSION.HCC1395_tumor.L003 -148 Cycle Base Substitution 21405 884.02 15.00 29.93 -14.93 Before
REGRESSION.HCC1395_tumor.L003 -149 Cycle Base Substitution 13263 813.45 14.00 30.83 -16.83 Before
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Substitution 27155 36.14 30.00 31.71 -1.71 Before
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Insertion 27155 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Deletion 27155 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -150 Cycle Base Substitution 4635 8.75 30.00 30.14 -0.14 Before
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Substitution 27065 42.75 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Insertion 27065 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Deletion 27065 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Substitution 27149 41.21 30.00 31.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Insertion 27149 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Deletion 27149 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Substitution 27026 44.44 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Insertion 27026 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Deletion 27026 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Substitution 26998 43.15 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Insertion 26998 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Deletion 26998 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -2 Cycle Base Substitution 27254 71.07 27.00 28.51 -1.51 Before
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Substitution 27046 31.90 30.00 31.75 -1.75 Before
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Insertion 27046 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Deletion 27046 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Substitution 27004 23.79 32.00 32.10 -0.10 Before
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Insertion 27004 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Deletion 27004 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Substitution 27002 35.55 30.00 31.89 -1.89 Before
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Insertion 27002 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Deletion 27002 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Substitution 27051 28.31 31.00 31.79 -0.79 Before
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Insertion 27051 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Deletion 27051 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Substitution 27095 35.42 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Insertion 27095 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Deletion 27095 1.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Substitution 27061 35.06 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Insertion 27061 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Deletion 27061 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Substitution 26890 40.79 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Insertion 26890 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Deletion 26890 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Substitution 26880 34.88 30.00 30.05 -0.05 Before
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Insertion 26880 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Deletion 26880 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Substitution 26907 56.64 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Insertion 26907 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Deletion 26907 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Substitution 26861 40.81 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Insertion 26861 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Deletion 26861 2.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -3 Cycle Base Substitution 27248 69.20 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Substitution 26905 38.38 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Insertion 26903 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Deletion 26903 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Substitution 26917 35.74 30.00 30.40 -0.40 Before
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Insertion 26915 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Deletion 26915 2.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Substitution 27040 33.21 30.00 30.28 -0.28 Before
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Insertion 27037 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Deletion 27037 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Substitution 26881 34.89 30.00 30.79 -0.79 Before
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Insertion 26879 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Deletion 26879 2.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Substitution 26841 30.29 30.00 30.36 -0.36 Before
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Insertion 26840 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Deletion 26840 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Substitution 26890 35.81 30.00 30.66 -0.66 Before
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Insertion 26890 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Deletion 26890 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Substitution 26902 39.16 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Insertion 26902 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Deletion 26902 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Substitution 26771 50.30 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Insertion 26771 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Deletion 26771 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Substitution 26846 42.85 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Insertion 26846 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Deletion 26846 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Substitution 26829 32.92 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Insertion 26827 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Deletion 26827 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -4 Cycle Base Substitution 27130 70.54 28.00 30.14 -2.14 Before
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Substitution 26915 49.03 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Insertion 26913 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Deletion 26913 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Substitution 26674 43.56 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Insertion 26673 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Deletion 26673 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Substitution 26654 25.36 30.00 30.30 -0.30 Before
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Insertion 26652 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Deletion 26652 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Substitution 26811 36.81 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Insertion 26808 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Deletion 26808 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Substitution 26732 30.40 30.00 30.17 -0.17 Before
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Insertion 26730 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Deletion 26730 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Substitution 26899 31.07 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Insertion 26896 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Deletion 26896 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Substitution 26690 35.25 30.00 30.80 -0.80 Before
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Insertion 26688 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Deletion 26688 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Substitution 26775 45.58 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Insertion 26773 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Deletion 26773 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Substitution 26731 32.39 30.00 30.46 -0.46 Before
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Insertion 26728 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Deletion 26728 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Substitution 26716 46.52 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Insertion 26708 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Deletion 26708 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Substitution 27210 48.92 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Insertion 27210 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Deletion 27210 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Substitution 26735 32.55 30.00 30.77 -0.77 Before
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Insertion 26729 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Deletion 26729 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Substitution 26662 38.37 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Insertion 26650 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Deletion 26650 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Substitution 26631 28.55 30.00 30.63 -0.63 Before
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Insertion 26617 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Deletion 26617 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Substitution 26538 31.93 30.00 30.64 -0.64 Before
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Insertion 26519 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Deletion 26519 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Substitution 26604 42.66 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Insertion 26580 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Deletion 26580 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Substitution 26637 42.75 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Insertion 26608 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Deletion 26608 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Substitution 26534 37.18 30.00 30.35 -0.35 Before
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Insertion 26501 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Deletion 26501 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Substitution 26580 33.04 30.00 30.80 -0.80 Before
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Insertion 26540 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Deletion 26540 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Substitution 26558 34.26 30.00 30.93 -0.93 Before
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Insertion 26514 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Deletion 26514 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Substitution 26670 39.19 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Insertion 26619 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Deletion 26619 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Substitution 27058 49.86 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Insertion 27058 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Deletion 27058 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Substitution 26607 44.22 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Insertion 26557 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Deletion 26557 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Substitution 26344 31.85 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Insertion 26291 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Deletion 26291 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Substitution 26408 33.96 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Insertion 26351 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Deletion 26351 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Substitution 26518 43.66 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Insertion 26452 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Deletion 26452 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Substitution 26556 42.90 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Insertion 26483 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Deletion 26483 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Substitution 26541 31.27 30.00 30.96 -0.96 Before
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Insertion 26452 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Deletion 26452 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Substitution 26632 44.57 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Insertion 26542 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Deletion 26542 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Substitution 26376 37.12 30.00 30.53 -0.53 Before
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Insertion 26295 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Deletion 26295 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Substitution 26464 41.73 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Insertion 26371 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Deletion 26371 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Substitution 26396 38.86 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Insertion 26297 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Deletion 26297 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Substitution 27018 48.04 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Insertion 27018 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Deletion 27018 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Substitution 26475 41.71 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Insertion 26377 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Deletion 26377 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Substitution 26417 44.90 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Insertion 26295 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Deletion 26295 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Substitution 26248 42.27 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Insertion 26121 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Deletion 26121 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Substitution 26228 33.65 30.00 30.52 -0.52 Before
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Insertion 26098 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Deletion 26098 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Substitution 26282 33.45 30.00 30.24 -0.24 Before
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Insertion 26145 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Deletion 26145 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Substitution 26252 37.20 30.00 30.47 -0.47 Before
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Insertion 26116 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Deletion 26116 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Substitution 26215 42.51 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Insertion 26071 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Deletion 26071 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Substitution 26133 40.86 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Insertion 25986 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Deletion 25986 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Substitution 26035 44.02 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Insertion 25886 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Deletion 25886 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Substitution 26015 48.43 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Insertion 25859 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Deletion 25859 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Substitution 27127 43.31 29.00 30.95 -1.95 Before
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Insertion 27127 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Deletion 27127 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Substitution 25979 42.80 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Insertion 25823 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Deletion 25823 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Substitution 26012 41.85 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Insertion 25849 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Deletion 25849 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Substitution 25933 47.55 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Insertion 25755 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Deletion 25755 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Substitution 25842 45.31 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Insertion 25648 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Deletion 25648 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Substitution 25858 48.15 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Insertion 25666 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Deletion 25666 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Substitution 25816 50.43 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Insertion 25638 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Deletion 25638 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Substitution 25559 57.64 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Insertion 25380 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Deletion 25380 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Substitution 25774 44.35 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Insertion 25578 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Deletion 25578 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Substitution 25717 44.95 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Insertion 25518 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Deletion 25518 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Substitution 25630 52.39 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Insertion 25424 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Deletion 25424 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Substitution 27107 43.04 30.00 31.17 -1.17 Before
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Insertion 27107 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Deletion 27107 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Substitution 25564 38.58 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Insertion 25356 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Deletion 25356 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Substitution 25450 42.93 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Insertion 25243 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Deletion 25243 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Substitution 25363 42.65 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Insertion 25135 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Deletion 25135 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Substitution 25372 59.84 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Insertion 25156 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Deletion 25156 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Substitution 25230 37.43 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Insertion 25012 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Deletion 25012 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Substitution 25242 37.64 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Insertion 25019 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Deletion 25019 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Substitution 25200 57.66 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Insertion 24964 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Deletion 24964 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Substitution 25057 44.74 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Insertion 24796 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Deletion 24796 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Substitution 25189 46.02 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Insertion 24933 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Deletion 24933 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Substitution 24951 45.00 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Insertion 24705 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Deletion 24705 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 1 Cycle Base Substitution 26780 61.99 27.00 28.67 -1.67 Before
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Substitution 27030 38.16 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Insertion 27030 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Deletion 27030 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Substitution 24836 46.14 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Insertion 24589 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Deletion 24589 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Substitution 24928 45.99 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Insertion 24685 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Deletion 24685 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Substitution 24917 44.14 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Insertion 24660 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Deletion 24660 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Substitution 24710 36.25 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Insertion 24456 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Deletion 24456 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Substitution 24828 40.33 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Insertion 24576 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Deletion 24576 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Substitution 24678 41.23 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Insertion 24424 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Deletion 24424 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Substitution 24538 44.46 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Insertion 24276 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Deletion 24276 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Substitution 24578 51.58 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Insertion 24318 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Deletion 24318 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Substitution 24420 41.32 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Insertion 24135 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Deletion 24135 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Substitution 24505 40.94 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Insertion 24225 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Deletion 24225 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Substitution 27001 35.49 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Insertion 27001 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Deletion 27001 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Substitution 24315 55.01 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Insertion 24032 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Deletion 24032 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Substitution 24245 47.00 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Insertion 23954 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Deletion 23954 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Substitution 24137 51.88 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Insertion 23865 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Deletion 23865 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Substitution 24240 43.96 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Insertion 23979 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Deletion 23979 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Substitution 24063 47.19 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Insertion 23807 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Deletion 23807 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Substitution 24066 51.97 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Insertion 23795 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Deletion 23795 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Substitution 23988 47.83 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Insertion 23718 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Deletion 23718 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Substitution 24004 49.26 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Insertion 23719 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Deletion 23719 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Substitution 23819 35.36 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Insertion 23536 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Deletion 23536 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Substitution 23787 37.94 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Insertion 23490 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Deletion 23490 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Substitution 26967 29.84 31.00 31.69 -0.69 Before
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Insertion 26967 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Deletion 26967 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Substitution 23737 42.96 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Insertion 23452 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Deletion 23452 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Substitution 23642 49.34 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Insertion 23351 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Deletion 23351 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Substitution 23684 38.71 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Insertion 23396 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Deletion 23396 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Substitution 23542 35.94 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Insertion 23251 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Deletion 23251 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Substitution 23487 49.43 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Insertion 23171 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Deletion 23171 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Substitution 23344 39.22 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Insertion 23036 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Deletion 23036 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Substitution 23424 50.22 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Insertion 23099 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Deletion 23099 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Substitution 23340 39.69 29.00 29.96 -0.96 Before
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Insertion 23018 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Deletion 23018 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Substitution 23217 51.69 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Insertion 22910 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Deletion 22910 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Substitution 23113 53.41 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Insertion 22815 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Deletion 22815 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Substitution 26971 22.73 31.00 31.34 -0.34 Before
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Insertion 26971 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Deletion 26971 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Substitution 23053 38.78 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Insertion 22742 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Deletion 22742 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Substitution 22889 46.59 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Insertion 22577 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Deletion 22577 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Substitution 23035 36.68 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Insertion 22722 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Deletion 22722 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Substitution 22803 50.20 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Insertion 22469 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Deletion 22469 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Substitution 22787 52.50 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Insertion 22443 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Deletion 22443 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Substitution 22623 44.39 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Insertion 22276 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Deletion 22276 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Substitution 22643 41.33 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Insertion 22295 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Deletion 22295 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Substitution 22520 36.40 29.00 29.76 -0.76 Before
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Insertion 22155 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Deletion 22155 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Substitution 22530 41.11 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Insertion 22177 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Deletion 22177 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Substitution 22379 48.48 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Insertion 22037 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Deletion 22037 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Substitution 26942 26.67 31.00 31.62 -0.62 Before
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Insertion 26942 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Deletion 26942 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Substitution 22309 52.07 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Insertion 21982 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Deletion 21982 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Substitution 22235 42.69 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Insertion 21908 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Deletion 21908 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Substitution 22159 43.73 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Insertion 21795 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Deletion 21795 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Substitution 22108 50.16 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Insertion 21752 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Deletion 21752 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Substitution 22075 37.87 29.00 29.89 -0.89 Before
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Insertion 21705 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Deletion 21705 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Substitution 21870 41.87 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Insertion 21510 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Deletion 21510 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Substitution 21789 51.89 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Insertion 21445 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Deletion 21445 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 147 Cycle Base Substitution 21754 54.38 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L003 148 Cycle Base Substitution 21666 46.64 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L003 149 Cycle Base Substitution 21513 51.16 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Substitution 27122 30.30 31.00 31.62 -0.62 Before
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Insertion 27122 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Deletion 27122 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 150 Cycle Base Substitution 21594 40.73 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Substitution 27065 26.12 32.00 32.81 -0.81 Before
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Insertion 27065 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Deletion 27065 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Substitution 27035 29.01 32.00 33.11 -1.11 Before
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Insertion 27035 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Deletion 27035 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Substitution 27050 20.06 33.00 33.06 -0.06 Before
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Insertion 27050 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Deletion 27050 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Substitution 26946 22.78 32.00 32.63 -0.63 Before
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Insertion 26946 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Deletion 26946 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 2 Cycle Base Substitution 27198 49.75 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Substitution 26924 16.41 33.00 33.01 -0.01 Before
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Insertion 26924 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Deletion 26924 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Substitution 26891 26.85 32.00 33.35 -1.35 Before
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Insertion 26891 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Deletion 26891 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Substitution 26880 22.74 32.00 32.58 -0.58 Before
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Insertion 26880 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Deletion 26880 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Substitution 26966 17.45 33.00 33.17 -0.17 Before
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Insertion 26966 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Deletion 26966 2.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Substitution 26830 22.78 32.00 32.64 -0.64 Before
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Insertion 26830 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Deletion 26830 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Substitution 26829 23.07 32.00 32.52 -0.52 Before
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Insertion 26829 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Deletion 26829 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Substitution 26821 32.24 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Insertion 26821 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Deletion 26821 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Substitution 26661 31.24 31.00 31.25 -0.25 Before
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Insertion 26661 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Deletion 26661 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Substitution 26727 33.90 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Insertion 26727 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Deletion 26727 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Substitution 26941 22.31 31.00 31.78 -0.78 Before
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Insertion 26940 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Deletion 26940 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 3 Cycle Base Substitution 27139 50.36 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Substitution 26882 37.68 30.00 31.70 -1.70 Before
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Insertion 26879 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Deletion 26879 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Substitution 26892 32.95 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Insertion 26888 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Deletion 26888 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Substitution 26901 38.60 30.00 31.51 -1.51 Before
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Insertion 26897 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Deletion 26897 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Substitution 26808 27.63 31.00 31.71 -0.71 Before
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Insertion 26806 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Deletion 26806 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Substitution 26745 33.23 30.00 31.36 -1.36 Before
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Insertion 26744 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Deletion 26744 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Substitution 26860 35.30 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Insertion 26860 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Deletion 26860 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Substitution 26744 38.71 30.00 31.95 -1.95 Before
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Insertion 26743 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Deletion 26743 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Substitution 26719 29.88 31.00 31.55 -0.55 Before
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Insertion 26717 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Deletion 26717 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Substitution 26729 36.64 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Insertion 26728 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Deletion 26728 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Substitution 26772 33.10 30.00 30.94 -0.94 Before
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Insertion 26771 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Deletion 26771 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 4 Cycle Base Substitution 27076 66.20 28.00 30.71 -2.71 Before
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Substitution 26674 25.96 31.00 31.55 -0.55 Before
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Insertion 26673 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Deletion 26673 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Substitution 26699 33.48 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Insertion 26699 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Deletion 26699 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Substitution 26668 23.46 31.00 31.60 -0.60 Before
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Insertion 26667 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Deletion 26667 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Substitution 26772 34.22 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Insertion 26770 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Deletion 26770 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Substitution 26773 35.28 30.00 31.82 -1.82 Before
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Insertion 26771 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Deletion 26771 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Substitution 26709 27.33 31.00 31.36 -0.36 Before
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Insertion 26706 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Deletion 26706 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Substitution 26697 23.88 31.00 31.91 -0.91 Before
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Insertion 26693 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Deletion 26693 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Substitution 26735 30.96 31.00 31.18 -0.18 Before
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Insertion 26732 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Deletion 26732 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Substitution 26651 30.76 31.00 31.25 -0.25 Before
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Insertion 26647 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Deletion 26647 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Substitution 26731 23.63 31.00 31.17 -0.17 Before
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Insertion 26724 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Deletion 26724 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Substitution 27161 48.35 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Insertion 27161 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Deletion 27161 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Substitution 26662 27.01 31.00 31.40 -0.40 Before
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Insertion 26655 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Deletion 26655 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Substitution 26595 39.02 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Insertion 26586 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Deletion 26586 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Substitution 26730 36.86 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Insertion 26718 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Deletion 26718 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Substitution 26618 30.99 31.00 31.68 -0.68 Before
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Insertion 26599 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Deletion 26599 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Substitution 26549 30.64 31.00 31.76 -0.76 Before
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Insertion 26522 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Deletion 26522 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Substitution 26612 27.90 31.00 31.59 -0.59 Before
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Insertion 26581 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Deletion 26581 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Substitution 26577 36.95 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Insertion 26544 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Deletion 26544 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Substitution 26593 36.96 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Insertion 26544 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Deletion 26544 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Substitution 26531 31.97 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Insertion 26476 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Deletion 26476 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Substitution 26522 34.19 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Insertion 26466 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Deletion 26466 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Substitution 27007 34.70 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Insertion 27007 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Deletion 27007 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Substitution 26557 34.84 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Insertion 26503 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Deletion 26503 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Substitution 26401 31.77 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Insertion 26345 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Deletion 26345 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Substitution 26450 44.36 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Insertion 26392 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Deletion 26392 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Substitution 26484 32.87 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Insertion 26425 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Deletion 26425 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Substitution 26433 30.58 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Insertion 26354 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Deletion 26354 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Substitution 26481 40.29 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Insertion 26399 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Deletion 26399 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Substitution 26448 25.59 31.00 31.55 -0.55 Before
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Insertion 26360 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Deletion 26360 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Substitution 26475 28.32 31.00 31.45 -0.45 Before
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Insertion 26390 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Deletion 26390 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Substitution 26275 39.64 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Insertion 26186 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Deletion 26186 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Substitution 26248 35.04 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Insertion 26155 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Deletion 26155 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Substitution 26977 41.45 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Insertion 26977 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Deletion 26977 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Substitution 26375 50.26 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Insertion 26278 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Deletion 26278 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Substitution 26316 31.21 30.00 30.86 -0.86 Before
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Insertion 26201 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Deletion 26201 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Substitution 26269 39.29 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Insertion 26149 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Deletion 26149 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Substitution 26185 42.66 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Insertion 26059 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Deletion 26059 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Substitution 26186 39.55 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Insertion 26051 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Deletion 26051 2.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Substitution 26177 45.92 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Insertion 26041 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Deletion 26041 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Substitution 26119 46.30 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Insertion 25979 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Deletion 25979 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Substitution 25992 51.98 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Insertion 25843 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Deletion 25843 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Substitution 26018 42.11 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Insertion 25870 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Deletion 25870 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Substitution 25911 40.47 29.00 30.88 -1.88 Before
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Insertion 25755 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Deletion 25755 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Substitution 27104 36.17 30.00 30.94 -0.94 Before
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Insertion 27104 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Deletion 27104 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Substitution 25949 38.19 29.00 30.97 -1.97 Before
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Insertion 25787 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Deletion 25787 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Substitution 25893 36.56 29.00 30.86 -1.86 Before
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Insertion 25729 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Deletion 25729 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Substitution 25802 41.41 29.00 30.74 -1.74 Before
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Insertion 25636 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Deletion 25636 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Substitution 25823 34.87 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Insertion 25636 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Deletion 25636 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Substitution 25796 39.30 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Insertion 25613 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Deletion 25613 2.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Substitution 25750 42.43 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Insertion 25562 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Deletion 25562 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Substitution 25712 34.67 30.00 30.85 -0.85 Before
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Insertion 25525 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Deletion 25525 2.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Substitution 25551 38.01 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Insertion 25359 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Deletion 25359 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Substitution 25623 40.30 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Insertion 25425 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Deletion 25425 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Substitution 25581 37.92 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Insertion 25385 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Deletion 25385 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Substitution 27152 34.35 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Insertion 27152 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Deletion 27152 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Substitution 25504 41.38 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Insertion 25304 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Deletion 25304 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Substitution 25364 40.75 29.00 30.74 -1.74 Before
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Insertion 25158 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Deletion 25158 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Substitution 25333 41.47 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Insertion 25114 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Deletion 25114 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Substitution 25305 41.93 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Insertion 25080 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Deletion 25080 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Substitution 25314 56.37 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Insertion 25079 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Deletion 25079 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Substitution 25268 40.73 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Insertion 25031 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Deletion 25031 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Substitution 25157 36.00 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Insertion 24918 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Deletion 24918 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Substitution 25127 42.38 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Insertion 24876 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Deletion 24876 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Substitution 25050 49.83 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Insertion 24807 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Deletion 24807 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Substitution 24884 39.77 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Insertion 24649 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Deletion 24649 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 12 QualityScore Base Substitution 80755 7864.87 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L003 24 QualityScore Base Substitution 195656 775.94 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L003 40 QualityScore Base Substitution 7321264 5505.22 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L003 45 QualityScore Base Insertion 7597675 147.81 46.00 45.00 1.00 Before
REGRESSION.HCC1395_tumor.L003 45 QualityScore Base Deletion 7597675 343.56 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L004 AA Context Base Substitution 526709 1334.65 26.00 29.55 -3.55 Before
REGRESSION.HCC1395_tumor.L004 AAA Context Base Insertion 179674 19.33 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L004 AAA Context Base Deletion 179674 86.82 41.00 45.00 -4.00 Before
REGRESSION.HCC1395_tumor.L004 AAC Context Base Insertion 85946 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAC Context Base Deletion 85946 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAG Context Base Insertion 134433 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAG Context Base Deletion 134433 5.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAT Context Base Insertion 102144 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AAT Context Base Deletion 102144 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AC Context Base Substitution 358068 1148.21 25.00 28.75 -3.75 Before
REGRESSION.HCC1395_tumor.L004 ACA Context Base Insertion 132157 4.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACA Context Base Deletion 132157 7.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACC Context Base Insertion 104617 2.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACC Context Base Deletion 104617 2.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACG Context Base Insertion 20766 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACG Context Base Deletion 20766 2.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACT Context Base Insertion 105778 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ACT Context Base Deletion 105778 6.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AG Context Base Substitution 562767 547.94 30.00 31.86 -1.86 Before
REGRESSION.HCC1395_tumor.L004 AGA Context Base Insertion 151909 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGA Context Base Deletion 151909 5.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGC Context Base Insertion 139835 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGC Context Base Deletion 139835 3.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGG Context Base Insertion 163341 5.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGG Context Base Deletion 163341 4.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGT Context Base Insertion 103466 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AGT Context Base Deletion 103466 4.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 AT Context Base Substitution 370533 472.43 29.00 32.10 -3.10 Before
REGRESSION.HCC1395_tumor.L004 ATA Context Base Insertion 74822 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATA Context Base Deletion 74822 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATC Context Base Insertion 79178 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATC Context Base Deletion 79178 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATG Context Base Insertion 114419 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATG Context Base Deletion 114419 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATT Context Base Insertion 109283 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 ATT Context Base Deletion 109283 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CA Context Base Substitution 593738 1252.17 27.00 30.01 -3.01 Before
REGRESSION.HCC1395_tumor.L004 CAA Context Base Insertion 112618 2.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAA Context Base Deletion 112618 3.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAC Context Base Insertion 125383 6.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAC Context Base Deletion 125383 9.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAG Context Base Insertion 213362 5.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAG Context Base Deletion 213362 10.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAT Context Base Insertion 110907 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CAT Context Base Deletion 110907 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CC Context Base Substitution 550588 1764.86 25.00 29.01 -4.01 Before
REGRESSION.HCC1395_tumor.L004 CCA Context Base Insertion 175737 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCA Context Base Deletion 175737 2.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCC Context Base Insertion 150838 7.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCC Context Base Deletion 150838 8.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCG Context Base Insertion 37387 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCG Context Base Deletion 37387 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCT Context Base Insertion 178411 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CCT Context Base Deletion 178411 7.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CG Context Base Substitution 113333 326.82 26.00 29.83 -3.83 Before
REGRESSION.HCC1395_tumor.L004 CGA Context Base Insertion 44242 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGA Context Base Deletion 44242 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGC Context Base Insertion 63086 2.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGC Context Base Deletion 63086 3.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGG Context Base Insertion 77022 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGG Context Base Deletion 77022 3.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGT Context Base Insertion 49242 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CGT Context Base Deletion 49242 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CT Context Base Substitution 598025 439.30 31.00 32.49 -1.49 Before
REGRESSION.HCC1395_tumor.L004 CTA Context Base Insertion 58742 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTA Context Base Deletion 58742 4.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTC Context Base Insertion 146160 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTC Context Base Deletion 146160 9.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTG Context Base Insertion 215412 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTG Context Base Deletion 215412 5.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTT Context Base Insertion 146418 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 CTT Context Base Deletion 146418 5.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GA Context Base Substitution 496916 827.09 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L004 GAA Context Base Insertion 141361 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAA Context Base Deletion 141361 3.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAC Context Base Insertion 83932 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAC Context Base Deletion 83932 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAG Context Base Insertion 150869 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAG Context Base Deletion 150869 4.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAT Context Base Insertion 83448 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GAT Context Base Deletion 83448 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GC Context Base Substitution 487716 1142.95 27.00 30.30 -3.30 Before
REGRESSION.HCC1395_tumor.L004 GCA Context Base Insertion 148765 1.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCA Context Base Deletion 148765 4.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCC Context Base Insertion 146552 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCC Context Base Deletion 146552 6.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCG Context Base Insertion 35952 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCG Context Base Deletion 35952 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCT Context Base Insertion 155378 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GCT Context Base Deletion 155378 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GG Context Base Substitution 577304 782.08 29.00 31.86 -2.86 Before
REGRESSION.HCC1395_tumor.L004 GGA Context Base Insertion 157245 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGA Context Base Deletion 157245 5.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGC Context Base Insertion 145018 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGC Context Base Deletion 145018 4.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGG Context Base Insertion 158408 4.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGG Context Base Deletion 158408 12.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGT Context Base Insertion 114812 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GGT Context Base Deletion 114812 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GT Context Base Substitution 408529 716.41 28.00 32.17 -4.17 Before
REGRESSION.HCC1395_tumor.L004 GTA Context Base Insertion 66478 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTA Context Base Deletion 66478 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTC Context Base Insertion 91120 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTC Context Base Deletion 91120 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTG Context Base Insertion 140037 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTG Context Base Deletion 140037 7.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTT Context Base Insertion 100371 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 GTT Context Base Deletion 100371 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TA Context Base Substitution 289953 762.43 26.00 29.71 -3.71 Before
REGRESSION.HCC1395_tumor.L004 TAA Context Base Insertion 88459 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAA Context Base Deletion 88459 4.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAC Context Base Insertion 60513 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAC Context Base Deletion 60513 4.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAG Context Base Insertion 59701 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAG Context Base Deletion 59701 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAT Context Base Insertion 71350 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TAT Context Base Deletion 71350 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TC Context Base Substitution 449172 1082.63 26.00 30.65 -4.65 Before
REGRESSION.HCC1395_tumor.L004 TCA Context Base Insertion 132431 2.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCA Context Base Deletion 132431 6.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCC Context Base Insertion 144908 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCC Context Base Deletion 144908 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCG Context Base Insertion 18376 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCG Context Base Deletion 18376 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCT Context Base Insertion 154264 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TCT Context Base Deletion 154264 7.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TG Context Base Substitution 588512 450.39 31.00 31.83 -0.83 Before
REGRESSION.HCC1395_tumor.L004 TGA Context Base Insertion 139657 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGA Context Base Deletion 139657 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGC Context Base Insertion 136666 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGC Context Base Deletion 136666 3.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGG Context Base Insertion 174219 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGG Context Base Deletion 174219 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGT Context Base Insertion 138292 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TGT Context Base Deletion 138292 8.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TT Context Base Substitution 541191 710.22 29.00 32.80 -3.80 Before
REGRESSION.HCC1395_tumor.L004 TTA Context Base Insertion 87661 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTA Context Base Deletion 87661 4.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTC Context Base Insertion 129932 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTC Context Base Deletion 129932 5.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTG Context Base Insertion 114477 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTG Context Base Deletion 114477 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 TTT Context Base Insertion 181443 20.65 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L004 TTT Context Base Deletion 181443 52.06 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L004 -1 Cycle Base Substitution 26686 93.44 25.00 25.69 -0.69 Before
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Substitution 26954 30.81 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Insertion 26954 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Deletion 26954 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Substitution 24852 50.18 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Insertion 24622 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Deletion 24622 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Substitution 24805 45.33 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Insertion 24553 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Deletion 24553 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Substitution 24902 45.07 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Insertion 24633 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Deletion 24633 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Substitution 24865 39.57 29.00 29.95 -0.95 Before
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Insertion 24569 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Deletion 24569 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Substitution 24654 47.00 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Insertion 24372 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Deletion 24372 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Substitution 24709 50.86 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Insertion 24442 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Deletion 24442 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Substitution 24618 43.11 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Insertion 24346 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Deletion 24346 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Substitution 24407 46.22 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Insertion 24155 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Deletion 24155 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Substitution 24403 31.75 30.00 30.20 -0.20 Before
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Insertion 24152 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Deletion 24152 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Substitution 24343 47.46 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Insertion 24084 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Deletion 24084 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Substitution 26909 33.08 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Insertion 26908 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Deletion 26908 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Substitution 24284 39.97 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Insertion 23989 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Deletion 23989 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Substitution 24257 53.04 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Insertion 23967 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Deletion 23967 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Substitution 24203 45.22 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Insertion 23926 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Deletion 23926 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Substitution 24035 38.46 29.00 29.83 -0.83 Before
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Insertion 23744 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Deletion 23744 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Substitution 24106 47.89 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Insertion 23837 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Deletion 23837 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Substitution 23974 48.69 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Insertion 23694 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Deletion 23694 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Substitution 23953 41.52 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Insertion 23691 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Deletion 23691 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Substitution 23761 50.69 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Insertion 23503 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Deletion 23503 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Substitution 23828 53.97 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Insertion 23576 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Deletion 23576 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Substitution 23870 62.40 28.00 29.70 -1.70 Before
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Insertion 23614 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Deletion 23614 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Substitution 26987 37.39 30.00 31.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Insertion 26986 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Deletion 26986 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Substitution 23704 49.29 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Insertion 23431 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Deletion 23431 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Substitution 23561 43.82 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Insertion 23270 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Deletion 23270 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Substitution 23609 50.95 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Insertion 23306 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Deletion 23306 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Substitution 23498 49.23 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Insertion 23163 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Deletion 23163 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Substitution 23499 45.93 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Insertion 23165 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Deletion 23165 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Substitution 23313 47.52 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Insertion 22989 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Deletion 22989 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Substitution 23274 46.28 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Insertion 22942 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Deletion 22942 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Substitution 23250 38.04 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Insertion 22926 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Deletion 22926 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Substitution 23119 44.64 28.00 29.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Insertion 22807 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Deletion 22807 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Substitution 23087 54.52 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Insertion 22736 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Deletion 22736 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Substitution 26948 32.94 30.00 31.56 -1.56 Before
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Insertion 26947 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Deletion 26947 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Substitution 22992 43.80 28.00 29.62 -1.62 Before
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Insertion 22672 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Deletion 22672 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Substitution 22839 43.28 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Insertion 22510 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Deletion 22510 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Substitution 22842 43.11 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Insertion 22506 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Deletion 22506 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Substitution 22787 47.23 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Insertion 22464 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Deletion 22464 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Substitution 22719 44.65 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Insertion 22386 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Deletion 22386 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Substitution 22642 44.17 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Insertion 22310 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Deletion 22310 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Substitution 22561 41.94 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Insertion 22232 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Deletion 22232 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Substitution 22493 44.72 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Insertion 22145 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Deletion 22145 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Substitution 22349 40.93 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Insertion 22034 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Deletion 22034 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Substitution 22344 49.17 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Insertion 21999 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Deletion 21999 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Substitution 26866 33.64 30.00 31.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Insertion 26865 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Deletion 26865 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Substitution 22194 46.33 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Insertion 21833 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Deletion 21833 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Substitution 22122 46.07 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Insertion 21733 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Deletion 21733 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Substitution 22153 43.66 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Insertion 21736 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Deletion 21736 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Substitution 21947 51.72 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Insertion 21511 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Deletion 21511 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Substitution 21914 39.90 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Insertion 21458 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Deletion 21458 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Substitution 21945 49.29 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Insertion 16815 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Deletion 16815 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Substitution 21821 71.20 27.00 29.77 -2.77 Before
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Insertion 16772 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Deletion 16772 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -147 Cycle Base Substitution 21678 246.25 22.00 29.94 -7.94 Before
REGRESSION.HCC1395_tumor.L004 -148 Cycle Base Substitution 21466 853.45 15.00 30.05 -15.05 Before
REGRESSION.HCC1395_tumor.L004 -149 Cycle Base Substitution 13329 796.31 14.00 30.48 -16.48 Before
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Substitution 26942 30.80 31.00 31.71 -0.71 Before
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Insertion 26942 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Deletion 26942 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -150 Cycle Base Substitution 4647 10.82 29.00 29.64 -0.64 Before
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Substitution 27004 37.39 30.00 31.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Insertion 27004 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Deletion 27004 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Substitution 26884 37.54 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Insertion 26884 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Deletion 26884 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Substitution 26764 38.99 30.00 31.87 -1.87 Before
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Insertion 26764 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Deletion 26764 2.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Substitution 26840 45.19 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Insertion 26840 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Deletion 26840 2.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -2 Cycle Base Substitution 27085 76.79 27.00 28.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Substitution 26848 41.23 31.00 32.12 -1.12 Before
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Insertion 26848 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Deletion 26848 2.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Substitution 26825 32.45 30.00 31.88 -1.88 Before
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Insertion 26825 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Deletion 26825 3.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Substitution 26856 36.37 30.00 31.87 -1.87 Before
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Insertion 26856 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Deletion 26856 2.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Substitution 26900 39.06 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Insertion 26900 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Deletion 26900 2.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Substitution 26811 35.99 30.00 31.82 -1.82 Before
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Insertion 26811 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Deletion 26811 2.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Substitution 26796 31.07 31.00 31.57 -0.57 Before
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Insertion 26796 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Deletion 26796 2.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Substitution 26785 45.66 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Insertion 26785 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Deletion 26785 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Substitution 26830 30.39 30.00 30.39 -0.39 Before
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Insertion 26830 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Deletion 26830 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Substitution 26748 40.41 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Insertion 26747 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Deletion 26747 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Substitution 26812 50.43 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Insertion 26810 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Deletion 26810 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -3 Cycle Base Substitution 27100 78.39 27.00 29.84 -2.84 Before
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Substitution 26840 40.22 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Insertion 26838 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Deletion 26838 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Substitution 26736 41.59 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Insertion 26734 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Deletion 26734 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Substitution 26864 30.94 30.00 30.48 -0.48 Before
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Insertion 26862 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Deletion 26862 2.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Substitution 26709 36.50 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Insertion 26707 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Deletion 26707 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Substitution 26697 29.92 30.00 30.53 -0.53 Before
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Insertion 26696 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Deletion 26696 2.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Substitution 26737 36.86 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Insertion 26735 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Deletion 26735 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Substitution 26744 38.80 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Insertion 26743 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Deletion 26743 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Substitution 26647 34.58 30.00 30.43 -0.43 Before
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Insertion 26646 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Deletion 26646 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Substitution 26672 37.66 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Insertion 26671 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Deletion 26671 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Substitution 26707 43.94 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Insertion 26706 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Deletion 26706 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -4 Cycle Base Substitution 27023 81.06 27.00 29.86 -2.86 Before
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Substitution 26673 32.25 30.00 30.71 -0.71 Before
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Insertion 26668 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Deletion 26668 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Substitution 26600 40.11 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Insertion 26596 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Deletion 26596 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Substitution 26518 48.06 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Insertion 26515 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Deletion 26515 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Substitution 26616 27.61 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Insertion 26612 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Deletion 26612 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Substitution 26585 33.01 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Insertion 26582 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Deletion 26582 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Substitution 26636 36.21 30.00 30.60 -0.60 Before
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Insertion 26633 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Deletion 26633 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Substitution 26593 37.74 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Insertion 26591 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Deletion 26591 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Substitution 26525 48.69 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Insertion 26518 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Deletion 26518 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Substitution 26609 44.19 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Insertion 26603 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Deletion 26603 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Substitution 26628 39.41 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Insertion 26621 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Deletion 26621 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Substitution 27110 48.27 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Insertion 27110 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Deletion 27110 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Substitution 26607 38.62 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Insertion 26596 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Deletion 26596 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Substitution 26502 43.89 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Insertion 26495 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Deletion 26495 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Substitution 26481 35.87 30.00 30.48 -0.48 Before
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Insertion 26471 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Deletion 26471 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Substitution 26592 29.89 30.00 30.99 -0.99 Before
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Insertion 26577 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Deletion 26577 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Substitution 26481 42.30 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Insertion 26459 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Deletion 26459 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Substitution 26429 47.60 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Insertion 26399 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Deletion 26399 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Substitution 26529 35.90 30.00 30.53 -0.53 Before
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Insertion 26484 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Deletion 26484 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Substitution 26456 38.57 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Insertion 26402 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Deletion 26402 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Substitution 26550 34.08 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Insertion 26492 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Deletion 26492 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Substitution 26517 50.92 29.00 30.74 -1.74 Before
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Insertion 26462 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Deletion 26462 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Substitution 26911 47.34 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Insertion 26911 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Deletion 26911 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Substitution 26475 34.57 30.00 30.82 -0.82 Before
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Insertion 26422 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Deletion 26422 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Substitution 26382 40.05 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Insertion 26327 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Deletion 26327 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Substitution 26479 62.22 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Insertion 26424 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Deletion 26424 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Substitution 26400 41.84 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Insertion 26338 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Deletion 26338 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Substitution 26423 35.71 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Insertion 26359 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Deletion 26359 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Substitution 26481 37.56 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Insertion 26417 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Deletion 26417 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Substitution 26409 39.34 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Insertion 26344 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Deletion 26344 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Substitution 26347 38.03 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Insertion 26254 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Deletion 26254 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Substitution 26323 42.26 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Insertion 26222 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Deletion 26222 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Substitution 26318 46.01 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Insertion 26212 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Deletion 26212 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Substitution 26812 48.80 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Insertion 26812 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Deletion 26812 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Substitution 26306 51.01 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Insertion 26203 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Deletion 26203 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Substitution 26305 46.41 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Insertion 26212 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Deletion 26212 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Substitution 26203 39.92 29.00 30.73 -1.73 Before
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Insertion 26094 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Deletion 26094 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Substitution 26192 35.08 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Insertion 26067 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Deletion 26067 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Substitution 26124 37.60 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Insertion 25980 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Deletion 25980 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Substitution 26215 40.30 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Insertion 26064 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Deletion 26064 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Substitution 26162 33.07 30.00 30.74 -0.74 Before
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Insertion 26022 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Deletion 26022 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Substitution 25937 37.03 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Insertion 25799 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Deletion 25799 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Substitution 25909 42.97 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Insertion 25767 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Deletion 25767 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Substitution 25964 35.67 30.00 30.46 -0.46 Before
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Insertion 25807 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Deletion 25807 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Substitution 26935 47.54 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Insertion 26935 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Deletion 26935 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Substitution 25883 37.07 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Insertion 25732 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Deletion 25732 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Substitution 25923 41.81 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Insertion 25759 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Deletion 25759 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Substitution 25757 45.67 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Insertion 25584 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Deletion 25584 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Substitution 25781 41.73 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Insertion 25618 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Deletion 25618 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Substitution 25734 47.08 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Insertion 25559 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Deletion 25559 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Substitution 25748 35.99 30.00 30.76 -0.76 Before
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Insertion 25564 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Deletion 25564 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Substitution 25718 46.93 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Insertion 25530 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Deletion 25530 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Substitution 25616 36.64 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Insertion 25417 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Deletion 25417 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Substitution 25554 47.17 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Insertion 25353 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Deletion 25353 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Substitution 25546 47.20 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Insertion 25340 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Deletion 25340 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Substitution 27038 40.91 30.00 31.16 -1.16 Before
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Insertion 27038 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Deletion 27038 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Substitution 25459 39.37 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Insertion 25244 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Deletion 25244 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Substitution 25425 30.69 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Insertion 25227 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Deletion 25227 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Substitution 25274 53.31 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Insertion 25086 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Deletion 25086 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Substitution 25313 44.15 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Insertion 25114 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Deletion 25114 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Substitution 25297 57.46 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Insertion 25109 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Deletion 25109 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Substitution 25230 48.28 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Insertion 25007 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Deletion 25007 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Substitution 25190 43.03 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Insertion 24953 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Deletion 24953 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Substitution 25036 51.74 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Insertion 24805 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Deletion 24805 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Substitution 24944 52.55 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Insertion 24701 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Deletion 24701 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Substitution 25038 41.90 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Insertion 24812 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Deletion 24812 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 1 Cycle Base Substitution 26657 51.31 28.00 28.78 -0.78 Before
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Substitution 26917 33.25 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Insertion 26917 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Deletion 26917 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Substitution 24909 37.53 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Insertion 24677 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Deletion 24677 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Substitution 24831 44.01 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Insertion 24580 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Deletion 24580 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Substitution 24649 38.23 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Insertion 24377 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Deletion 24377 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Substitution 24652 32.92 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Insertion 24364 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Deletion 24364 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Substitution 24633 38.30 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Insertion 24357 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Deletion 24357 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Substitution 24449 43.30 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Insertion 24188 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Deletion 24188 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Substitution 24456 49.92 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Insertion 24208 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Deletion 24208 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Substitution 24424 53.21 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Insertion 24167 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Deletion 24167 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Substitution 24246 56.43 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Insertion 23988 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Deletion 23988 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Substitution 24311 33.40 30.00 30.43 -0.43 Before
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Insertion 24052 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Deletion 24052 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Substitution 26990 32.82 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Insertion 26990 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Deletion 26990 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Substitution 24227 41.99 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Insertion 23932 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Deletion 23932 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Substitution 24115 45.14 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Insertion 23827 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Deletion 23827 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Substitution 23981 33.14 30.00 30.41 -0.41 Before
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Insertion 23704 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Deletion 23704 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Substitution 24045 37.73 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Insertion 23744 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Deletion 23744 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Substitution 24014 37.68 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Insertion 23731 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Deletion 23731 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Substitution 23916 42.17 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Insertion 23648 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Deletion 23648 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Substitution 23861 42.50 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Insertion 23600 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Deletion 23600 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Substitution 23744 49.76 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Insertion 23482 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Deletion 23482 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Substitution 23695 45.02 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Insertion 23442 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Deletion 23442 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Substitution 23619 54.35 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Insertion 23369 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Deletion 23369 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Substitution 26806 32.80 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Insertion 26806 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Deletion 26806 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Substitution 23640 37.25 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Insertion 23363 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Deletion 23363 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Substitution 23472 33.70 30.00 30.30 -0.30 Before
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Insertion 23184 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Deletion 23184 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Substitution 23358 51.17 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Insertion 23048 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Deletion 23048 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Substitution 23422 40.78 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Insertion 23107 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Deletion 23107 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Substitution 23409 50.57 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Insertion 23080 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Deletion 23080 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Substitution 23390 43.05 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Insertion 23072 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Deletion 23072 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Substitution 23245 51.96 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Insertion 22924 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Deletion 22924 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Substitution 23204 45.22 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Insertion 22898 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Deletion 22898 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Substitution 23181 38.52 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Insertion 22868 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Deletion 22868 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Substitution 22980 38.76 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Insertion 22665 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Deletion 22665 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Substitution 26868 35.65 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Insertion 26868 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Deletion 26868 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Substitution 22990 42.98 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Insertion 22674 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Deletion 22674 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Substitution 22762 45.30 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Insertion 22433 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Deletion 22433 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Substitution 22737 38.95 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Insertion 22404 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Deletion 22404 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Substitution 22701 41.79 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Insertion 22387 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Deletion 22387 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Substitution 22661 35.91 29.00 29.98 -0.98 Before
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Insertion 22326 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Deletion 22326 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Substitution 22522 49.56 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Insertion 22194 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Deletion 22194 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Substitution 22554 37.45 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Insertion 22220 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Deletion 22220 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Substitution 22496 39.14 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Insertion 22165 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Deletion 22165 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Substitution 22329 44.93 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Insertion 22016 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Deletion 22016 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Substitution 22339 51.24 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Insertion 22021 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Deletion 22021 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Substitution 26868 38.54 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Insertion 26868 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Deletion 26868 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Substitution 22245 47.69 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Insertion 21933 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Deletion 21933 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Substitution 22200 42.80 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Insertion 21874 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Deletion 21874 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Substitution 22050 40.76 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Insertion 21691 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Deletion 21691 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Substitution 21992 40.24 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Insertion 21662 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Deletion 21662 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Substitution 21961 30.07 30.00 30.18 -0.18 Before
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Insertion 21634 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Deletion 21634 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Substitution 21842 37.28 29.00 29.67 -0.67 Before
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Insertion 21526 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Deletion 21526 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Substitution 21757 36.85 29.00 29.87 -0.87 Before
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Insertion 21456 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Deletion 21456 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 147 Cycle Base Substitution 21794 47.67 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L004 148 Cycle Base Substitution 21597 55.10 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 149 Cycle Base Substitution 21580 47.61 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Substitution 26888 34.67 30.00 31.64 -1.64 Before
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Insertion 26888 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Deletion 26888 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 150 Cycle Base Substitution 21464 43.41 28.00 29.46 -1.46 Before
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Substitution 26982 32.28 31.00 32.97 -1.97 Before
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Insertion 26982 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Deletion 26982 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Substitution 26892 21.58 32.00 32.70 -0.70 Before
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Insertion 26892 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Deletion 26892 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Substitution 26914 19.16 33.00 33.38 -0.38 Before
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Insertion 26914 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Deletion 26914 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Substitution 26827 18.01 32.00 33.00 -1.00 Before
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Insertion 26827 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Deletion 26827 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 2 Cycle Base Substitution 27140 54.82 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Substitution 26846 23.24 32.00 33.19 -1.19 Before
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Insertion 26846 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Deletion 26846 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Substitution 26877 26.37 32.00 32.97 -0.97 Before
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Insertion 26877 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Deletion 26877 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Substitution 26840 20.46 33.00 33.47 -0.47 Before
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Insertion 26840 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Deletion 26840 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Substitution 26825 22.85 32.00 33.16 -1.16 Before
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Insertion 26825 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Deletion 26825 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Substitution 26813 25.62 32.00 33.35 -1.35 Before
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Insertion 26813 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Deletion 26813 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Substitution 26756 23.11 32.00 33.27 -1.27 Before
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Insertion 26756 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Deletion 26756 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Substitution 26869 32.54 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Insertion 26868 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Deletion 26868 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Substitution 26765 35.13 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Insertion 26764 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Deletion 26764 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Substitution 26718 28.51 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Insertion 26717 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Deletion 26717 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Substitution 26771 26.76 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Insertion 26771 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Deletion 26771 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 3 Cycle Base Substitution 27056 56.69 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Substitution 26632 33.19 30.00 31.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Insertion 26631 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Deletion 26631 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Substitution 26722 27.65 31.00 31.90 -0.90 Before
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Insertion 26721 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Deletion 26721 2.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Substitution 26758 41.05 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Insertion 26757 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Deletion 26757 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Substitution 26669 25.45 31.00 31.63 -0.63 Before
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Insertion 26669 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Deletion 26669 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Substitution 26647 26.74 31.00 31.74 -0.74 Before
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Insertion 26647 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Deletion 26647 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Substitution 26541 32.32 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Insertion 26541 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Deletion 26541 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Substitution 26672 30.75 31.00 32.15 -1.15 Before
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Insertion 26672 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Deletion 26672 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Substitution 26703 34.59 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Insertion 26701 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Deletion 26701 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Substitution 26691 35.17 30.00 31.75 -1.75 Before
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Insertion 26690 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Deletion 26690 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Substitution 26622 33.29 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Insertion 26620 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Deletion 26620 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 4 Cycle Base Substitution 26908 54.72 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Substitution 26582 35.01 30.00 31.61 -1.61 Before
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Insertion 26579 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Deletion 26579 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Substitution 26618 35.32 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Insertion 26615 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Deletion 26615 3.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Substitution 26536 21.18 32.00 32.02 -0.02 Before
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Insertion 26532 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Deletion 26532 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Substitution 26631 43.01 30.00 31.74 -1.74 Before
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Insertion 26629 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Deletion 26629 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Substitution 26634 24.29 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Insertion 26632 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Deletion 26632 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Substitution 26457 42.90 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Insertion 26454 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Deletion 26454 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Substitution 26629 29.80 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Insertion 26626 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Deletion 26626 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Substitution 26503 27.97 31.00 31.79 -0.79 Before
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Insertion 26498 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Deletion 26498 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Substitution 26420 29.75 31.00 31.97 -0.97 Before
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Insertion 26414 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Deletion 26414 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Substitution 26530 31.04 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Insertion 26523 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Deletion 26523 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Substitution 27032 44.72 30.00 31.17 -1.17 Before
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Insertion 27032 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Deletion 27032 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Substitution 26523 40.93 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Insertion 26515 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Deletion 26515 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Substitution 26537 38.69 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Insertion 26528 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Deletion 26528 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Substitution 26489 33.36 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Insertion 26475 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Deletion 26475 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Substitution 26497 36.63 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Insertion 26479 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Deletion 26479 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Substitution 26354 25.95 31.00 31.43 -0.43 Before
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Insertion 26336 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Deletion 26336 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Substitution 26447 38.85 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Insertion 26417 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Deletion 26417 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Substitution 26443 34.56 30.00 31.68 -1.68 Before
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Insertion 26399 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Deletion 26399 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Substitution 26409 47.96 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Insertion 26366 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Deletion 26366 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Substitution 26380 32.65 30.00 31.45 -1.45 Before
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Insertion 26331 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Deletion 26331 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Substitution 26364 33.39 30.00 31.72 -1.72 Before
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Insertion 26313 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Deletion 26313 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Substitution 26857 37.62 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Insertion 26857 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Deletion 26857 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Substitution 26342 37.58 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Insertion 26289 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Deletion 26289 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Substitution 26280 29.88 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Insertion 26229 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Deletion 26229 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Substitution 26284 40.22 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Insertion 26226 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Deletion 26226 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Substitution 26220 35.92 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Insertion 26163 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Deletion 26163 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Substitution 26254 35.30 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Insertion 26193 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Deletion 26193 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Substitution 26232 50.66 30.00 31.15 -1.15 Before
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Insertion 26165 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Deletion 26165 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Substitution 26151 26.98 31.00 31.50 -0.50 Before
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Insertion 26070 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Deletion 26070 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Substitution 26251 40.13 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Insertion 26155 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Deletion 26155 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Substitution 26287 31.56 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Insertion 26187 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Deletion 26187 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Substitution 26227 34.68 30.00 31.36 -1.36 Before
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Insertion 26126 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Deletion 26126 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Substitution 26914 30.28 31.00 31.80 -0.80 Before
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Insertion 26914 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Deletion 26914 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Substitution 26189 28.02 31.00 31.53 -0.53 Before
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Insertion 26091 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Deletion 26091 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Substitution 26169 25.54 31.00 31.32 -0.32 Before
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Insertion 26075 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Deletion 26075 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Substitution 26037 35.24 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Insertion 25932 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Deletion 25932 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Substitution 26102 45.94 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Insertion 25982 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Deletion 25982 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Substitution 25999 27.99 31.00 31.47 -0.47 Before
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Insertion 25863 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Deletion 25863 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Substitution 25940 29.23 31.00 31.14 -0.14 Before
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Insertion 25799 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Deletion 25799 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Substitution 26005 29.42 31.00 31.16 -0.16 Before
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Insertion 25873 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Deletion 25873 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Substitution 26051 44.05 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Insertion 25923 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Deletion 25923 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Substitution 25862 32.88 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Insertion 25730 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Deletion 25730 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Substitution 25908 33.80 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Insertion 25752 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Deletion 25752 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Substitution 26876 24.00 31.00 31.40 -0.40 Before
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Insertion 26876 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Deletion 26876 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Substitution 25797 39.32 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Insertion 25634 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Deletion 25634 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Substitution 25702 48.10 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Insertion 25538 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Deletion 25538 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Substitution 25708 35.02 30.00 30.85 -0.85 Before
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Insertion 25540 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Deletion 25540 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Substitution 25676 46.61 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Insertion 25520 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Deletion 25520 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Substitution 25636 46.70 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Insertion 25464 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Deletion 25464 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Substitution 25584 40.81 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Insertion 25405 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Deletion 25405 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Substitution 25439 46.71 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Insertion 25253 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Deletion 25253 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Substitution 25554 37.05 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Insertion 25353 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Deletion 25353 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Substitution 25432 35.67 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Insertion 25237 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Deletion 25237 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Substitution 25241 37.99 29.00 30.94 -1.94 Before
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Insertion 25038 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Deletion 25038 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Substitution 27017 38.92 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Insertion 27017 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Deletion 27017 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Substitution 25281 39.04 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Insertion 25068 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Deletion 25068 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Substitution 25275 43.08 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Insertion 25082 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Deletion 25082 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Substitution 25281 42.17 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Insertion 25081 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Deletion 25081 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Substitution 25169 31.24 30.00 30.85 -0.85 Before
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Insertion 24964 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Deletion 24964 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Substitution 25249 42.32 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Insertion 25062 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Deletion 25062 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Substitution 25101 42.82 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Insertion 24886 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Deletion 24886 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Substitution 25035 38.71 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Insertion 24815 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Deletion 24815 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Substitution 24975 36.35 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Insertion 24739 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Deletion 24739 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Substitution 24976 32.51 30.00 30.73 -0.73 Before
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Insertion 24734 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Deletion 24734 2.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Substitution 24888 42.45 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Insertion 24659 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Deletion 24659 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 12 QualityScore Base Substitution 79019 7627.42 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L004 24 QualityScore Base Substitution 193481 701.35 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L004 40 QualityScore Base Substitution 7293905 5577.68 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L004 45 QualityScore Base Insertion 7566405 136.27 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L004 45 QualityScore Base Deletion 7566405 376.20 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L005 AA Context Base Substitution 522014 1294.85 26.00 29.62 -3.62 Before
REGRESSION.HCC1395_tumor.L005 AAA Context Base Insertion 176319 21.06 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L005 AAA Context Base Deletion 176319 67.85 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L005 AAC Context Base Insertion 85873 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAC Context Base Deletion 85873 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAG Context Base Insertion 134825 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAG Context Base Deletion 134825 5.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAT Context Base Insertion 100630 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AAT Context Base Deletion 100630 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AC Context Base Substitution 357857 1111.24 25.00 28.62 -3.62 Before
REGRESSION.HCC1395_tumor.L005 ACA Context Base Insertion 132235 4.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACA Context Base Deletion 132235 9.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACC Context Base Insertion 104978 3.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACC Context Base Deletion 104978 2.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACG Context Base Insertion 20812 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACG Context Base Deletion 20812 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACT Context Base Insertion 105310 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ACT Context Base Deletion 105310 3.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AG Context Base Substitution 563617 549.45 30.00 31.90 -1.90 Before
REGRESSION.HCC1395_tumor.L005 AGA Context Base Insertion 152233 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGA Context Base Deletion 152233 5.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGC Context Base Insertion 140682 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGC Context Base Deletion 140682 3.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGG Context Base Insertion 164901 6.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGG Context Base Deletion 164901 4.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGT Context Base Insertion 102686 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AGT Context Base Deletion 102686 3.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 AT Context Base Substitution 368479 499.61 29.00 32.12 -3.12 Before
REGRESSION.HCC1395_tumor.L005 ATA Context Base Insertion 74029 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATA Context Base Deletion 74029 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATC Context Base Insertion 79631 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATC Context Base Deletion 79631 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATG Context Base Insertion 114504 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATG Context Base Deletion 114504 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATT Context Base Insertion 107655 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 ATT Context Base Deletion 107655 2.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CA Context Base Substitution 595975 1274.54 27.00 29.92 -2.92 Before
REGRESSION.HCC1395_tumor.L005 CAA Context Base Insertion 112515 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAA Context Base Deletion 112515 2.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAC Context Base Insertion 125752 7.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAC Context Base Deletion 125752 8.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAG Context Base Insertion 214147 5.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAG Context Base Deletion 214147 10.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAT Context Base Insertion 111289 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CAT Context Base Deletion 111289 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CC Context Base Substitution 556877 1835.85 25.00 28.87 -3.87 Before
REGRESSION.HCC1395_tumor.L005 CCA Context Base Insertion 177710 2.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCA Context Base Deletion 177710 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCC Context Base Insertion 153878 6.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCC Context Base Deletion 153878 5.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCG Context Base Insertion 37545 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCG Context Base Deletion 37545 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCT Context Base Insertion 179307 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CCT Context Base Deletion 179307 4.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CG Context Base Substitution 114341 368.38 26.00 29.60 -3.60 Before
REGRESSION.HCC1395_tumor.L005 CGA Context Base Insertion 44623 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGA Context Base Deletion 44623 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGC Context Base Insertion 64484 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGC Context Base Deletion 64484 3.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGG Context Base Insertion 77323 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGG Context Base Deletion 77323 3.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGT Context Base Insertion 49122 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CGT Context Base Deletion 49122 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CT Context Base Substitution 600392 468.56 31.00 32.44 -1.44 Before
REGRESSION.HCC1395_tumor.L005 CTA Context Base Insertion 58872 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTA Context Base Deletion 58872 2.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTC Context Base Insertion 146980 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTC Context Base Deletion 146980 6.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTG Context Base Insertion 216068 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTG Context Base Deletion 216068 4.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTT Context Base Insertion 145899 4.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 CTT Context Base Deletion 145899 4.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GA Context Base Substitution 497339 869.78 28.00 29.51 -1.51 Before
REGRESSION.HCC1395_tumor.L005 GAA Context Base Insertion 141195 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAA Context Base Deletion 141195 3.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAC Context Base Insertion 83822 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAC Context Base Deletion 83822 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAG Context Base Insertion 150718 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAG Context Base Deletion 150718 3.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAT Context Base Insertion 83760 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GAT Context Base Deletion 83760 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GC Context Base Substitution 491850 1154.05 27.00 30.14 -3.14 Before
REGRESSION.HCC1395_tumor.L005 GCA Context Base Insertion 149461 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCA Context Base Deletion 149461 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCC Context Base Insertion 148243 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCC Context Base Deletion 148243 4.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCG Context Base Insertion 36423 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCG Context Base Deletion 36423 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCT Context Base Insertion 157106 2.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GCT Context Base Deletion 157106 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GG Context Base Substitution 581550 778.98 29.00 31.70 -2.70 Before
REGRESSION.HCC1395_tumor.L005 GGA Context Base Insertion 157241 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGA Context Base Deletion 157241 4.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGC Context Base Insertion 146397 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGC Context Base Deletion 146397 4.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGG Context Base Insertion 159950 5.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGG Context Base Deletion 159950 8.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGT Context Base Insertion 115784 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GGT Context Base Deletion 115784 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GT Context Base Substitution 409438 715.25 28.00 31.98 -3.98 Before
REGRESSION.HCC1395_tumor.L005 GTA Context Base Insertion 65748 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTA Context Base Deletion 65748 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTC Context Base Insertion 91373 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTC Context Base Deletion 91373 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTG Context Base Insertion 141152 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTG Context Base Deletion 141152 4.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTT Context Base Insertion 99497 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 GTT Context Base Deletion 99497 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TA Context Base Substitution 287148 831.59 26.00 29.77 -3.77 Before
REGRESSION.HCC1395_tumor.L005 TAA Context Base Insertion 87331 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAA Context Base Deletion 87331 3.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAC Context Base Insertion 60124 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAC Context Base Deletion 60124 3.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAG Context Base Insertion 59698 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAG Context Base Deletion 59698 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAT Context Base Insertion 70090 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TAT Context Base Deletion 70090 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TC Context Base Substitution 450196 1007.60 27.00 30.52 -3.52 Before
REGRESSION.HCC1395_tumor.L005 TCA Context Base Insertion 131860 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCA Context Base Deletion 131860 5.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCC Context Base Insertion 146004 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCC Context Base Deletion 146004 3.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCG Context Base Insertion 18698 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCG Context Base Deletion 18698 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCT Context Base Insertion 154453 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TCT Context Base Deletion 154453 5.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TG Context Base Substitution 589674 480.20 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L005 TGA Context Base Insertion 139438 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGA Context Base Deletion 139438 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGC Context Base Insertion 137104 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGC Context Base Deletion 137104 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGG Context Base Insertion 175046 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGG Context Base Deletion 175046 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGT Context Base Insertion 139115 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TGT Context Base Deletion 139115 4.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TT Context Base Substitution 534138 708.86 29.00 32.89 -3.89 Before
REGRESSION.HCC1395_tumor.L005 TTA Context Base Insertion 86228 2.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTA Context Base Deletion 86228 2.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTC Context Base Insertion 129447 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTC Context Base Deletion 129447 6.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTG Context Base Insertion 113736 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTG Context Base Deletion 113736 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 TTT Context Base Insertion 177515 14.90 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L005 TTT Context Base Deletion 177515 51.71 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L005 -1 Cycle Base Substitution 26755 85.70 25.00 25.85 -0.85 Before
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Substitution 26998 40.64 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Insertion 26998 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Deletion 26998 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Substitution 24816 49.33 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Insertion 24548 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Deletion 24548 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Substitution 24777 66.04 28.00 30.10 -2.10 Before
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Insertion 24506 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Deletion 24506 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Substitution 24673 46.83 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Insertion 24405 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Deletion 24405 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Substitution 24641 59.16 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Insertion 24382 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Deletion 24382 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Substitution 24539 44.43 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Insertion 24292 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Deletion 24292 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Substitution 24419 44.82 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Insertion 24169 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Deletion 24169 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Substitution 24469 42.88 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Insertion 24220 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Deletion 24220 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Substitution 24288 40.98 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Insertion 24029 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Deletion 24029 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Substitution 24301 54.01 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Insertion 24033 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Deletion 24033 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Substitution 24332 44.25 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Insertion 24072 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Deletion 24072 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Substitution 26905 40.01 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Insertion 26905 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Deletion 26905 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Substitution 24265 50.43 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Insertion 23990 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Deletion 23990 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Substitution 24244 37.60 29.00 29.92 -0.92 Before
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Insertion 23971 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Deletion 23971 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Substitution 24157 42.25 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Insertion 23867 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Deletion 23867 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Substitution 24031 53.82 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Insertion 23738 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Deletion 23738 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Substitution 23925 53.62 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Insertion 23650 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Deletion 23650 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Substitution 23832 59.99 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Insertion 23534 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Deletion 23534 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Substitution 23814 53.29 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Insertion 23520 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Deletion 23520 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Substitution 23816 59.60 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Insertion 23513 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Deletion 23513 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Substitution 23720 55.20 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Insertion 23414 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Deletion 23414 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Substitution 23662 49.22 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Insertion 23369 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Deletion 23369 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Substitution 26923 46.96 30.00 31.71 -1.71 Before
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Insertion 26923 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Deletion 26923 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Substitution 23642 46.67 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Insertion 23342 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Deletion 23342 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Substitution 23497 42.78 28.00 29.54 -1.54 Before
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Insertion 23204 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Deletion 23204 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Substitution 23455 51.77 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Insertion 23165 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Deletion 23165 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Substitution 23405 43.09 28.00 29.49 -1.49 Before
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Insertion 23102 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Deletion 23102 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Substitution 23317 64.31 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Insertion 23013 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Deletion 23013 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Substitution 23335 48.34 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Insertion 23032 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Deletion 23032 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Substitution 23176 37.19 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Insertion 22880 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Deletion 22880 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Substitution 23060 33.97 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Insertion 22744 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Deletion 22744 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Substitution 23040 51.24 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Insertion 22711 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Deletion 22711 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Substitution 23007 44.91 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Insertion 22686 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Deletion 22686 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Substitution 26900 47.22 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Insertion 26900 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Deletion 26900 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Substitution 22854 45.96 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Insertion 22534 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Deletion 22534 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Substitution 22864 44.22 28.00 29.48 -1.48 Before
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Insertion 22531 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Deletion 22531 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Substitution 22761 43.78 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Insertion 22434 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Deletion 22434 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Substitution 22702 45.92 28.00 29.41 -1.41 Before
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Insertion 22378 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Deletion 22378 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Substitution 22693 48.85 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Insertion 22359 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Deletion 22359 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Substitution 22481 53.08 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Insertion 22148 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Deletion 22148 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Substitution 22485 32.05 30.00 30.02 -0.02 Before
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Insertion 22146 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Deletion 22146 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Substitution 22327 44.53 28.00 29.47 -1.47 Before
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Insertion 21974 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Deletion 21974 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Substitution 22306 57.81 28.00 29.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Insertion 21927 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Deletion 21927 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Substitution 22306 37.40 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Insertion 21932 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Deletion 21932 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Substitution 26986 39.26 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Insertion 26986 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Deletion 26986 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Substitution 22169 37.58 29.00 29.64 -0.64 Before
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Insertion 21779 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Deletion 21779 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Substitution 21985 32.00 29.00 29.66 -0.66 Before
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Insertion 21589 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Deletion 21589 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Substitution 21955 32.71 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Insertion 21541 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Deletion 21541 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Substitution 21870 33.02 29.00 29.99 -0.99 Before
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Insertion 21427 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Deletion 21427 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Substitution 21754 32.01 30.00 30.31 -0.31 Before
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Insertion 21277 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Deletion 21277 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Substitution 21771 39.88 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Insertion 16728 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Deletion 16728 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Substitution 21652 65.74 28.00 30.28 -2.28 Before
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Insertion 16640 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Deletion 16640 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -147 Cycle Base Substitution 21573 230.02 23.00 29.88 -6.88 Before
REGRESSION.HCC1395_tumor.L005 -148 Cycle Base Substitution 21366 867.74 15.00 29.95 -14.95 Before
REGRESSION.HCC1395_tumor.L005 -149 Cycle Base Substitution 13322 795.33 14.00 30.90 -16.90 Before
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Substitution 27029 27.44 31.00 31.71 -0.71 Before
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Insertion 27029 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Deletion 27029 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -150 Cycle Base Substitution 4691 6.44 30.00 30.40 -0.40 Before
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Substitution 26944 34.24 30.00 31.68 -1.68 Before
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Insertion 26944 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Deletion 26944 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Substitution 26933 33.90 30.00 31.64 -1.64 Before
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Insertion 26933 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Deletion 26933 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Substitution 26948 30.56 31.00 31.89 -0.89 Before
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Insertion 26948 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Deletion 26948 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Substitution 26836 41.76 30.00 31.74 -1.74 Before
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Insertion 26836 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Deletion 26836 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -2 Cycle Base Substitution 27162 77.86 27.00 28.70 -1.70 Before
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Substitution 26890 29.12 31.00 31.73 -0.73 Before
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Insertion 26890 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Deletion 26890 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Substitution 26846 37.62 30.00 31.77 -1.77 Before
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Insertion 26846 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Deletion 26846 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Substitution 26885 32.64 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Insertion 26885 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Deletion 26885 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Substitution 26830 33.61 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Insertion 26830 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Deletion 26830 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Substitution 26865 40.29 30.00 31.69 -1.69 Before
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Insertion 26865 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Deletion 26865 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Substitution 26886 38.23 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Insertion 26886 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Deletion 26886 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Substitution 26833 52.02 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Insertion 26833 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Deletion 26833 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Substitution 26800 37.68 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Insertion 26800 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Deletion 26800 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Substitution 26845 50.31 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Insertion 26844 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Deletion 26844 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Substitution 26828 40.66 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Insertion 26826 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Deletion 26826 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -3 Cycle Base Substitution 27219 70.25 28.00 29.58 -1.58 Before
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Substitution 26847 40.20 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Insertion 26845 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Deletion 26845 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Substitution 26733 45.36 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Insertion 26731 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Deletion 26731 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Substitution 26839 34.04 30.00 30.59 -0.59 Before
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Insertion 26838 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Deletion 26838 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Substitution 26814 41.80 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Insertion 26813 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Deletion 26813 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Substitution 26857 38.06 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Insertion 26856 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Deletion 26856 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Substitution 26799 50.03 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Insertion 26797 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Deletion 26797 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Substitution 26717 35.44 30.00 30.43 -0.43 Before
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Insertion 26715 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Deletion 26715 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Substitution 26730 36.19 30.00 30.35 -0.35 Before
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Insertion 26729 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Deletion 26729 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Substitution 26723 24.93 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Insertion 26722 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Deletion 26722 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Substitution 26788 41.55 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Insertion 26788 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Deletion 26788 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -4 Cycle Base Substitution 27073 68.39 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Substitution 26751 44.68 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Insertion 26750 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Deletion 26750 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Substitution 26700 36.09 30.00 30.30 -0.30 Before
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Insertion 26699 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Deletion 26699 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Substitution 26661 42.31 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Insertion 26658 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Deletion 26658 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Substitution 26659 37.07 30.00 30.58 -0.58 Before
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Insertion 26655 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Deletion 26655 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Substitution 26557 40.21 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Insertion 26553 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Deletion 26553 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Substitution 26508 42.87 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Insertion 26503 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Deletion 26503 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Substitution 26654 46.87 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Insertion 26647 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Deletion 26647 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Substitution 26613 45.33 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Insertion 26602 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Deletion 26602 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Substitution 26555 42.91 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Insertion 26540 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Deletion 26540 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Substitution 26616 32.47 30.00 30.89 -0.89 Before
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Insertion 26598 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Deletion 26598 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Substitution 27126 51.12 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Insertion 27126 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Deletion 27126 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Substitution 26610 45.97 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Insertion 26591 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Deletion 26591 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Substitution 26525 38.26 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Insertion 26507 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Deletion 26507 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Substitution 26510 36.43 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Insertion 26483 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Deletion 26483 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Substitution 26583 35.22 30.00 30.71 -0.71 Before
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Insertion 26553 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Deletion 26553 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Substitution 26628 37.21 30.00 30.83 -0.83 Before
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Insertion 26589 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Deletion 26589 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Substitution 26518 48.79 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Insertion 26481 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Deletion 26481 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Substitution 26425 48.91 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Insertion 26386 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Deletion 26386 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Substitution 26540 43.67 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Insertion 26506 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Deletion 26506 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Substitution 26408 43.97 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Insertion 26368 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Deletion 26368 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Substitution 26398 40.73 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Insertion 26353 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Deletion 26353 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Substitution 27061 48.43 29.00 30.75 -1.75 Before
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Insertion 27061 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Deletion 27061 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Substitution 26438 42.62 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Insertion 26396 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Deletion 26396 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Substitution 26491 41.58 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Insertion 26438 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Deletion 26438 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Substitution 26448 43.89 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Insertion 26385 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Deletion 26385 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Substitution 26415 41.73 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Insertion 26348 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Deletion 26348 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Substitution 26362 41.25 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Insertion 26303 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Deletion 26303 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Substitution 26331 38.66 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Insertion 26273 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Deletion 26273 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Substitution 26332 50.53 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Insertion 26256 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Deletion 26256 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Substitution 26409 40.30 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Insertion 26341 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Deletion 26341 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Substitution 26374 38.20 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Insertion 26285 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Deletion 26285 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Substitution 26242 38.93 30.00 31.11 -1.11 Before
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Insertion 26159 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Deletion 26159 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Substitution 27143 49.63 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Insertion 27143 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Deletion 27143 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Substitution 26296 47.77 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Insertion 26198 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Deletion 26198 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Substitution 26170 49.24 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Insertion 26067 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Deletion 26067 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Substitution 26156 42.06 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Insertion 26040 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Deletion 26040 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Substitution 26090 33.60 30.00 30.66 -0.66 Before
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Insertion 25973 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Deletion 25973 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Substitution 26129 47.77 29.00 30.75 -1.75 Before
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Insertion 26000 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Deletion 26000 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Substitution 26032 41.72 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Insertion 25911 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Deletion 25911 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Substitution 25960 45.27 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Insertion 25839 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Deletion 25839 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Substitution 25962 30.66 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Insertion 25833 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Deletion 25833 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Substitution 26082 44.40 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Insertion 25948 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Deletion 25948 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Substitution 26089 44.81 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Insertion 25935 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Deletion 25935 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Substitution 27009 42.08 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Insertion 27009 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Deletion 27009 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Substitution 25900 40.47 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Insertion 25741 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Deletion 25741 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Substitution 25840 38.16 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Insertion 25682 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Deletion 25682 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Substitution 25780 52.72 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Insertion 25604 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Deletion 25604 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Substitution 25760 51.01 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Insertion 25578 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Deletion 25578 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Substitution 25600 40.96 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Insertion 25421 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Deletion 25421 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Substitution 25586 48.09 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Insertion 25390 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Deletion 25390 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Substitution 25770 42.72 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Insertion 25574 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Deletion 25574 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Substitution 25655 51.13 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Insertion 25466 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Deletion 25466 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Substitution 25486 41.16 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Insertion 25282 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Deletion 25282 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Substitution 25476 48.19 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Insertion 25270 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Deletion 25270 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Substitution 26944 43.56 29.00 30.98 -1.98 Before
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Insertion 26944 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Deletion 26944 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Substitution 25406 44.69 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Insertion 25186 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Deletion 25186 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Substitution 25327 53.41 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Insertion 25087 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Deletion 25087 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Substitution 25354 38.45 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Insertion 25124 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Deletion 25124 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Substitution 25295 45.11 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Insertion 25059 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Deletion 25059 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Substitution 25208 59.68 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Insertion 24946 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Deletion 24946 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Substitution 25025 43.75 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Insertion 24784 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Deletion 24784 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Substitution 24961 47.98 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Insertion 24706 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Deletion 24706 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Substitution 24976 49.22 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Insertion 24709 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Deletion 24709 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Substitution 24781 44.69 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Insertion 24520 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Deletion 24520 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Substitution 24859 45.32 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Insertion 24587 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Deletion 24587 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 1 Cycle Base Substitution 26768 64.88 27.00 28.76 -1.76 Before
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Substitution 27081 28.25 31.00 31.30 -0.30 Before
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Insertion 27081 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Deletion 27081 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Substitution 24962 45.15 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Insertion 24705 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Deletion 24705 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Substitution 24874 46.42 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Insertion 24613 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Deletion 24613 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Substitution 24821 33.90 30.00 30.47 -0.47 Before
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Insertion 24556 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Deletion 24556 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Substitution 24700 42.90 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Insertion 24440 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Deletion 24440 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Substitution 24601 33.78 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Insertion 24347 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Deletion 24347 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Substitution 24498 30.88 30.00 30.61 -0.61 Before
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Insertion 24245 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Deletion 24245 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Substitution 24543 41.93 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Insertion 24284 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Deletion 24284 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Substitution 24538 34.72 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Insertion 24298 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Deletion 24298 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Substitution 24459 46.68 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Insertion 24192 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Deletion 24192 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Substitution 24429 45.31 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Insertion 24165 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Deletion 24165 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Substitution 27030 38.45 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Insertion 27030 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Deletion 27030 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Substitution 24281 47.81 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Insertion 24010 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Deletion 24010 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Substitution 24202 43.43 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Insertion 23920 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Deletion 23920 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Substitution 24067 45.09 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Insertion 23775 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Deletion 23775 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Substitution 24091 43.96 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Insertion 23803 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Deletion 23803 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Substitution 24033 45.77 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Insertion 23751 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Deletion 23751 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Substitution 24013 34.39 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Insertion 23732 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Deletion 23732 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Substitution 23869 49.79 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Insertion 23594 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Deletion 23594 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Substitution 23806 45.78 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Insertion 23528 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Deletion 23528 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Substitution 23701 40.27 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Insertion 23407 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Deletion 23407 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Substitution 23698 62.16 28.00 30.06 -2.06 Before
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Insertion 23428 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Deletion 23428 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Substitution 26944 37.57 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Insertion 26944 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Deletion 26944 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Substitution 23605 46.97 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Insertion 23345 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Deletion 23345 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Substitution 23628 41.50 29.00 30.36 -1.36 Before
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Insertion 23348 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Deletion 23348 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Substitution 23522 48.65 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Insertion 23244 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Deletion 23244 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Substitution 23413 43.81 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Insertion 23102 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Deletion 23102 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Substitution 23416 50.74 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Insertion 23107 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Deletion 23107 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Substitution 23310 34.05 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Insertion 23010 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Deletion 23010 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Substitution 23282 46.15 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Insertion 22976 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Deletion 22976 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Substitution 23260 46.74 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Insertion 22945 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Deletion 22945 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Substitution 23157 42.68 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Insertion 22854 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Deletion 22854 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Substitution 23119 52.43 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Insertion 22794 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Deletion 22794 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Substitution 26887 35.09 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Insertion 26887 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Deletion 26887 2.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Substitution 22932 40.41 29.00 29.97 -0.97 Before
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Insertion 22625 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Deletion 22625 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Substitution 22860 38.55 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Insertion 22555 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Deletion 22555 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Substitution 22887 43.88 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Insertion 22580 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Deletion 22580 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Substitution 22762 36.57 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Insertion 22454 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Deletion 22454 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Substitution 22686 44.52 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Insertion 22362 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Deletion 22362 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Substitution 22725 39.45 29.00 29.85 -0.85 Before
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Insertion 22398 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Deletion 22398 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Substitution 22608 38.75 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Insertion 22269 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Deletion 22269 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Substitution 22529 39.49 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Insertion 22192 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Deletion 22192 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Substitution 22464 41.36 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Insertion 22134 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Deletion 22134 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Substitution 22453 49.70 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Insertion 22112 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Deletion 22112 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Substitution 27033 35.20 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Insertion 27033 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Deletion 27033 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Substitution 22297 46.79 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Insertion 21971 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Deletion 21971 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Substitution 22181 53.88 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Insertion 21849 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Deletion 21849 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Substitution 22109 48.41 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Insertion 21768 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Deletion 21768 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Substitution 22070 38.58 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Insertion 21731 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Deletion 21731 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Substitution 21943 46.98 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Insertion 21591 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Deletion 21591 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Substitution 21883 49.74 28.00 29.84 -1.84 Before
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Insertion 21526 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Deletion 21526 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Substitution 21820 45.36 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Insertion 21479 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Deletion 21479 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 147 Cycle Base Substitution 21713 51.56 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L005 148 Cycle Base Substitution 21617 35.42 29.00 29.62 -0.62 Before
REGRESSION.HCC1395_tumor.L005 149 Cycle Base Substitution 21568 43.08 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Substitution 26938 36.45 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Insertion 26938 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Deletion 26938 1.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 150 Cycle Base Substitution 21498 38.85 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Substitution 26927 22.26 33.00 33.01 -0.01 Before
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Insertion 26927 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Deletion 26927 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Substitution 27009 21.24 33.00 33.15 -0.15 Before
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Insertion 27009 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Deletion 27009 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Substitution 26926 26.75 31.00 32.84 -1.84 Before
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Insertion 26926 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Deletion 26926 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Substitution 27002 19.87 32.00 32.69 -0.69 Before
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Insertion 27002 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Deletion 27002 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 2 Cycle Base Substitution 27149 58.16 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Substitution 26954 23.04 32.00 32.82 -0.82 Before
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Insertion 26954 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Deletion 26954 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Substitution 26872 30.06 32.00 33.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Insertion 26872 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Deletion 26872 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Substitution 26904 17.00 33.00 33.07 -0.07 Before
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Insertion 26904 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Deletion 26904 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Substitution 26896 29.51 32.00 33.15 -1.15 Before
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Insertion 26896 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Deletion 26896 2.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Substitution 26835 27.23 32.00 33.02 -1.02 Before
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Insertion 26835 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Deletion 26835 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Substitution 26890 18.30 33.00 33.13 -0.13 Before
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Insertion 26890 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Deletion 26890 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Substitution 26903 26.42 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Insertion 26903 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Deletion 26903 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Substitution 26755 29.11 31.00 31.30 -0.30 Before
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Insertion 26755 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Deletion 26755 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Substitution 26814 32.10 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Insertion 26814 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Deletion 26814 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Substitution 26783 27.90 31.00 31.90 -0.90 Before
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Insertion 26783 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Deletion 26783 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 3 Cycle Base Substitution 27216 61.68 29.00 31.09 -2.09 Before
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Substitution 26775 34.46 30.00 31.73 -1.73 Before
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Insertion 26775 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Deletion 26775 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Substitution 26865 33.92 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Insertion 26865 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Deletion 26865 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Substitution 26720 42.22 30.00 31.56 -1.56 Before
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Insertion 26720 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Deletion 26720 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Substitution 26705 30.36 31.00 31.79 -0.79 Before
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Insertion 26705 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Deletion 26705 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Substitution 26724 31.25 31.00 31.37 -0.37 Before
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Insertion 26724 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Deletion 26724 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Substitution 26816 24.28 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Insertion 26816 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Deletion 26816 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Substitution 26832 42.27 30.00 31.18 -1.18 Before
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Insertion 26831 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Deletion 26831 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Substitution 26761 29.80 31.00 32.01 -1.01 Before
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Insertion 26761 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Deletion 26761 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Substitution 26620 39.94 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Insertion 26619 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Deletion 26619 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Substitution 26633 26.68 31.00 31.90 -0.90 Before
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Insertion 26633 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Deletion 26633 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 4 Cycle Base Substitution 27104 57.20 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Substitution 26699 27.31 31.00 31.74 -0.74 Before
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Insertion 26698 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Deletion 26698 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Substitution 26638 27.32 31.00 31.66 -0.66 Before
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Insertion 26636 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Deletion 26636 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Substitution 26643 30.55 31.00 31.83 -0.83 Before
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Insertion 26638 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Deletion 26638 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Substitution 26766 32.09 30.00 31.61 -1.61 Before
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Insertion 26761 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Deletion 26761 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Substitution 26655 38.61 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Insertion 26651 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Deletion 26651 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Substitution 26579 35.20 30.00 31.88 -1.88 Before
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Insertion 26573 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Deletion 26573 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Substitution 26652 21.57 31.00 31.82 -0.82 Before
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Insertion 26647 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Deletion 26647 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Substitution 26603 28.59 31.00 31.65 -0.65 Before
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Insertion 26594 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Deletion 26594 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Substitution 26601 24.74 31.00 31.68 -0.68 Before
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Insertion 26588 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Deletion 26588 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Substitution 26549 32.27 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Insertion 26535 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Deletion 26535 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Substitution 27085 42.60 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Insertion 27085 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Deletion 27085 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Substitution 26631 34.81 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Insertion 26611 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Deletion 26611 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Substitution 26617 31.68 30.00 31.74 -1.74 Before
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Insertion 26596 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Deletion 26596 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Substitution 26644 33.27 30.00 31.59 -1.59 Before
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Insertion 26625 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Deletion 26625 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Substitution 26568 30.46 31.00 31.55 -0.55 Before
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Insertion 26541 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Deletion 26541 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Substitution 26490 32.04 30.00 31.59 -1.59 Before
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Insertion 26458 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Deletion 26458 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Substitution 26625 37.83 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Insertion 26590 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Deletion 26590 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Substitution 26462 31.19 31.00 31.71 -0.71 Before
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Insertion 26425 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Deletion 26425 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Substitution 26499 37.74 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Insertion 26468 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Deletion 26468 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Substitution 26503 36.46 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Insertion 26473 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Deletion 26473 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Substitution 26465 32.25 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Insertion 26427 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Deletion 26427 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Substitution 27040 32.00 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Insertion 27040 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Deletion 27040 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Substitution 26520 35.99 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Insertion 26477 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Deletion 26477 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Substitution 26412 28.66 31.00 31.27 -0.27 Before
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Insertion 26356 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Deletion 26356 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Substitution 26363 35.99 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Insertion 26304 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Deletion 26304 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Substitution 26441 44.47 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Insertion 26372 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Deletion 26372 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Substitution 26381 37.04 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Insertion 26319 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Deletion 26319 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Substitution 26357 35.71 30.00 31.32 -1.32 Before
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Insertion 26292 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Deletion 26292 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Substitution 26401 28.17 31.00 31.30 -0.30 Before
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Insertion 26332 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Deletion 26332 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Substitution 26335 37.00 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Insertion 26265 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Deletion 26265 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Substitution 26329 32.33 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Insertion 26252 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Deletion 26252 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Substitution 26291 25.30 31.00 31.22 -0.22 Before
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Insertion 26208 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Deletion 26208 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Substitution 27047 34.89 30.00 30.89 -0.89 Before
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Insertion 27047 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Deletion 27047 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Substitution 26240 31.05 31.00 31.21 -0.21 Before
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Insertion 26142 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Deletion 26142 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Substitution 26215 37.52 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Insertion 26111 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Deletion 26111 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Substitution 26132 37.21 30.00 31.17 -1.17 Before
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Insertion 26024 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Deletion 26024 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Substitution 26112 48.18 29.00 30.89 -1.89 Before
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Insertion 25987 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Deletion 25987 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Substitution 26226 36.71 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Insertion 26101 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Deletion 26101 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Substitution 26166 32.06 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Insertion 26039 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Deletion 26039 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Substitution 26103 34.37 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Insertion 25969 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Deletion 25969 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Substitution 26011 39.75 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Insertion 25878 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Deletion 25878 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Substitution 26009 31.73 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Insertion 25871 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Deletion 25871 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Substitution 25888 42.09 30.00 31.22 -1.22 Before
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Insertion 25728 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Deletion 25728 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Substitution 27121 40.62 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Insertion 27121 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Deletion 27121 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Substitution 25978 37.97 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Insertion 25818 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Deletion 25818 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Substitution 25932 33.83 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Insertion 25768 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Deletion 25768 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Substitution 25848 38.65 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Insertion 25677 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Deletion 25677 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Substitution 25649 35.94 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Insertion 25468 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Deletion 25468 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Substitution 25843 48.60 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Insertion 25650 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Deletion 25650 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Substitution 25702 38.47 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Insertion 25509 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Deletion 25509 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Substitution 25608 38.62 29.00 30.91 -1.91 Before
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Insertion 25417 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Deletion 25417 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Substitution 25777 37.69 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Insertion 25575 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Deletion 25575 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Substitution 25526 47.73 29.00 30.77 -1.77 Before
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Insertion 25318 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Deletion 25318 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Substitution 25600 44.92 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Insertion 25397 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Deletion 25397 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Substitution 27002 30.62 31.00 31.38 -0.38 Before
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Insertion 27002 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Deletion 27002 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Substitution 25651 54.60 29.00 31.05 -2.05 Before
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Insertion 25425 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Deletion 25425 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Substitution 25437 42.40 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Insertion 25211 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Deletion 25211 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Substitution 25338 34.39 30.00 30.93 -0.93 Before
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Insertion 25101 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Deletion 25101 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Substitution 25197 37.55 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Insertion 24961 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Deletion 24961 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Substitution 25310 33.53 30.00 30.82 -0.82 Before
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Insertion 25061 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Deletion 25061 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Substitution 25201 43.64 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Insertion 24950 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Deletion 24950 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Substitution 25056 43.14 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Insertion 24803 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Deletion 24803 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Substitution 25053 37.95 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Insertion 24807 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Deletion 24807 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Substitution 24954 43.79 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Insertion 24700 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Deletion 24700 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Substitution 25000 35.21 30.00 30.95 -0.95 Before
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Insertion 24736 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Deletion 24736 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 12 QualityScore Base Substitution 80803 7748.91 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L005 24 QualityScore Base Substitution 197111 804.63 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L005 40 QualityScore Base Substitution 7296499 5546.18 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L005 45 QualityScore Base Insertion 7574413 133.72 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L005 45 QualityScore Base Deletion 7574413 317.07 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L006 AA Context Base Substitution 522664 1421.99 26.00 29.57 -3.57 Before
REGRESSION.HCC1395_tumor.L006 AAA Context Base Insertion 177067 24.16 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L006 AAA Context Base Deletion 177067 80.72 41.00 45.00 -4.00 Before
REGRESSION.HCC1395_tumor.L006 AAC Context Base Insertion 85234 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAC Context Base Deletion 85234 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAG Context Base Insertion 133371 4.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAG Context Base Deletion 133371 4.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAT Context Base Insertion 101375 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AAT Context Base Deletion 101375 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AC Context Base Substitution 355764 1094.13 25.00 28.69 -3.69 Before
REGRESSION.HCC1395_tumor.L006 ACA Context Base Insertion 131711 2.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACA Context Base Deletion 131711 6.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACC Context Base Insertion 104069 3.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACC Context Base Deletion 104069 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACG Context Base Insertion 20579 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACG Context Base Deletion 20579 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACT Context Base Insertion 105184 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ACT Context Base Deletion 105184 4.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AG Context Base Substitution 560046 547.97 30.00 31.68 -1.68 Before
REGRESSION.HCC1395_tumor.L006 AGA Context Base Insertion 151623 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGA Context Base Deletion 151623 3.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGC Context Base Insertion 139343 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGC Context Base Deletion 139343 4.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGG Context Base Insertion 162876 6.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGG Context Base Deletion 162876 4.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGT Context Base Insertion 102820 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AGT Context Base Deletion 102820 3.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 AT Context Base Substitution 369385 467.58 29.00 32.05 -3.05 Before
REGRESSION.HCC1395_tumor.L006 ATA Context Base Insertion 74848 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATA Context Base Deletion 74848 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATC Context Base Insertion 79170 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATC Context Base Deletion 79170 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATG Context Base Insertion 114967 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATG Context Base Deletion 114967 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATT Context Base Insertion 107923 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 ATT Context Base Deletion 107923 2.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CA Context Base Substitution 592755 1254.98 27.00 29.97 -2.97 Before
REGRESSION.HCC1395_tumor.L006 CAA Context Base Insertion 112075 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAA Context Base Deletion 112075 3.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAC Context Base Insertion 125077 4.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAC Context Base Deletion 125077 7.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAG Context Base Insertion 212633 5.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAG Context Base Deletion 212633 10.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAT Context Base Insertion 111175 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CAT Context Base Deletion 111175 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CC Context Base Substitution 548315 1717.21 25.00 28.93 -3.93 Before
REGRESSION.HCC1395_tumor.L006 CCA Context Base Insertion 175722 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCA Context Base Deletion 175722 3.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCC Context Base Insertion 150247 6.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCC Context Base Deletion 150247 7.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCG Context Base Insertion 37585 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCG Context Base Deletion 37585 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCT Context Base Insertion 176865 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CCT Context Base Deletion 176865 6.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CG Context Base Substitution 113049 343.65 26.00 29.53 -3.53 Before
REGRESSION.HCC1395_tumor.L006 CGA Context Base Insertion 44233 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGA Context Base Deletion 44233 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGC Context Base Insertion 62770 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGC Context Base Deletion 62770 2.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGG Context Base Insertion 76664 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGG Context Base Deletion 76664 2.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGT Context Base Insertion 48500 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CGT Context Base Deletion 48500 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CT Context Base Substitution 593522 434.59 31.00 32.51 -1.51 Before
REGRESSION.HCC1395_tumor.L006 CTA Context Base Insertion 58443 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTA Context Base Deletion 58443 4.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTC Context Base Insertion 145622 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTC Context Base Deletion 145622 8.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTG Context Base Insertion 212136 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTG Context Base Deletion 212136 5.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTT Context Base Insertion 145606 3.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 CTT Context Base Deletion 145606 5.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GA Context Base Substitution 494808 881.63 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L006 GAA Context Base Insertion 141262 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAA Context Base Deletion 141262 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAC Context Base Insertion 83572 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAC Context Base Deletion 83572 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAG Context Base Insertion 149725 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAG Context Base Deletion 149725 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAT Context Base Insertion 83605 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GAT Context Base Deletion 83605 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GC Context Base Substitution 485067 1119.63 27.00 30.12 -3.12 Before
REGRESSION.HCC1395_tumor.L006 GCA Context Base Insertion 148258 2.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCA Context Base Deletion 148258 2.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCC Context Base Insertion 145611 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCC Context Base Deletion 145611 6.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCG Context Base Insertion 35664 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCG Context Base Deletion 35664 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCT Context Base Insertion 154141 2.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GCT Context Base Deletion 154141 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GG Context Base Substitution 573475 779.08 29.00 31.65 -2.65 Before
REGRESSION.HCC1395_tumor.L006 GGA Context Base Insertion 155941 2.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGA Context Base Deletion 155941 4.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGC Context Base Insertion 143899 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGC Context Base Deletion 143899 5.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGG Context Base Insertion 157017 5.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGG Context Base Deletion 157017 10.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGT Context Base Insertion 114562 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GGT Context Base Deletion 114562 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GT Context Base Substitution 405951 695.03 28.00 32.01 -4.01 Before
REGRESSION.HCC1395_tumor.L006 GTA Context Base Insertion 65686 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTA Context Base Deletion 65686 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTC Context Base Insertion 90778 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTC Context Base Deletion 90778 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTG Context Base Insertion 138882 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTG Context Base Deletion 138882 8.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTT Context Base Insertion 99461 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 GTT Context Base Deletion 99461 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TA Context Base Substitution 288051 806.96 26.00 29.68 -3.68 Before
REGRESSION.HCC1395_tumor.L006 TAA Context Base Insertion 87768 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAA Context Base Deletion 87768 4.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAC Context Base Insertion 59536 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAC Context Base Deletion 59536 3.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAG Context Base Insertion 59900 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAG Context Base Deletion 59900 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAT Context Base Insertion 70528 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TAT Context Base Deletion 70528 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TC Context Base Substitution 447502 1017.77 27.00 30.49 -3.49 Before
REGRESSION.HCC1395_tumor.L006 TCA Context Base Insertion 132478 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCA Context Base Deletion 132478 7.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCC Context Base Insertion 144781 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCC Context Base Deletion 144781 4.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCG Context Base Insertion 18361 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCG Context Base Deletion 18361 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCT Context Base Insertion 153298 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TCT Context Base Deletion 153298 6.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TG Context Base Substitution 583734 451.82 31.00 31.81 -0.81 Before
REGRESSION.HCC1395_tumor.L006 TGA Context Base Insertion 139217 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGA Context Base Deletion 139217 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGC Context Base Insertion 135881 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGC Context Base Deletion 135881 2.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGG Context Base Insertion 172641 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGG Context Base Deletion 172641 4.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGT Context Base Insertion 137344 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TGT Context Base Deletion 137344 4.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TT Context Base Substitution 535227 716.57 29.00 32.85 -3.85 Before
REGRESSION.HCC1395_tumor.L006 TTA Context Base Insertion 86863 2.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTA Context Base Deletion 86863 3.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTC Context Base Insertion 129207 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTC Context Base Deletion 129207 7.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTG Context Base Insertion 113594 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTG Context Base Deletion 113594 2.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 TTT Context Base Insertion 178613 16.84 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L006 TTT Context Base Deletion 178613 54.66 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L006 -1 Cycle Base Substitution 26503 96.73 25.00 26.05 -1.05 Before
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Substitution 26820 32.59 30.00 31.13 -1.13 Before
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Insertion 26820 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Deletion 26820 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Substitution 24579 50.57 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Insertion 24332 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Deletion 24332 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Substitution 24635 46.18 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Insertion 24395 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Deletion 24395 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Substitution 24539 56.20 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Insertion 24287 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Deletion 24287 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Substitution 24434 36.98 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Insertion 24190 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Deletion 24190 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Substitution 24397 44.05 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Insertion 24153 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Deletion 24153 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Substitution 24395 47.35 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Insertion 24160 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Deletion 24160 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Substitution 24330 37.76 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Insertion 24094 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Deletion 24094 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Substitution 24295 44.83 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Insertion 24045 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Deletion 24045 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Substitution 24239 47.55 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Insertion 23978 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Deletion 23978 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Substitution 24087 40.49 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Insertion 23833 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Deletion 23833 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Substitution 26843 39.18 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Insertion 26843 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Deletion 26843 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Substitution 24033 45.37 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Insertion 23772 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Deletion 23772 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Substitution 24029 41.22 29.00 29.71 -0.71 Before
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Insertion 23768 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Deletion 23768 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Substitution 23957 47.81 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Insertion 23679 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Deletion 23679 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Substitution 23988 46.00 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Insertion 23696 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Deletion 23696 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Substitution 23894 37.21 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Insertion 23591 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Deletion 23591 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Substitution 23723 53.89 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Insertion 23412 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Deletion 23412 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Substitution 23642 56.54 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Insertion 23349 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Deletion 23349 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Substitution 23646 58.03 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Insertion 23349 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Deletion 23349 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Substitution 23571 56.71 28.00 29.70 -1.70 Before
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Insertion 23275 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Deletion 23275 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Substitution 23602 67.59 27.00 29.72 -2.72 Before
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Insertion 23307 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Deletion 23307 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Substitution 26788 31.66 30.00 31.80 -1.80 Before
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Insertion 26788 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Deletion 26788 1.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Substitution 23512 51.03 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Insertion 23223 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Deletion 23223 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Substitution 23325 67.39 27.00 29.77 -2.77 Before
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Insertion 23021 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Deletion 23021 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Substitution 23240 46.76 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Insertion 22939 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Deletion 22939 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Substitution 23354 52.35 28.00 29.50 -1.50 Before
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Insertion 23059 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Deletion 23059 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Substitution 23254 55.52 28.00 29.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Insertion 22967 0.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Deletion 22967 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Substitution 23130 44.79 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Insertion 22830 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Deletion 22830 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Substitution 23050 45.34 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Insertion 22756 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Deletion 22756 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Substitution 23044 49.10 28.00 29.79 -1.79 Before
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Insertion 22762 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Deletion 22762 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Substitution 22968 43.95 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Insertion 22663 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Deletion 22663 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Substitution 22990 43.13 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Insertion 22664 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Deletion 22664 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Substitution 26790 46.38 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Insertion 26790 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Deletion 26790 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Substitution 22863 46.53 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Insertion 22540 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Deletion 22540 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Substitution 22797 40.91 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Insertion 22472 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Deletion 22472 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Substitution 22643 42.98 28.00 29.50 -1.50 Before
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Insertion 22330 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Deletion 22330 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Substitution 22542 48.92 28.00 29.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Insertion 22247 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Deletion 22247 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Substitution 22400 34.82 29.00 29.85 -0.85 Before
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Insertion 22098 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Deletion 22098 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Substitution 22400 48.29 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Insertion 22086 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Deletion 22086 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Substitution 22391 42.71 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Insertion 22056 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Deletion 22056 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Substitution 22337 49.62 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Insertion 21984 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Deletion 21984 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Substitution 22227 55.21 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Insertion 21860 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Deletion 21860 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Substitution 22239 44.43 28.00 29.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Insertion 21845 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Deletion 21845 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Substitution 26859 35.41 30.00 31.68 -1.68 Before
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Insertion 26859 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Deletion 26859 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Substitution 22076 40.44 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Insertion 21710 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Deletion 21710 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Substitution 21966 38.51 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Insertion 21580 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Deletion 21580 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Substitution 21863 43.89 28.00 29.51 -1.51 Before
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Insertion 21440 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Deletion 21440 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Substitution 21745 42.52 28.00 29.43 -1.43 Before
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Insertion 21294 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Deletion 21294 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Substitution 21644 25.83 29.00 29.85 -0.85 Before
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Insertion 21142 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Deletion 21142 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Substitution 21494 33.96 29.00 29.76 -0.76 Before
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Insertion 16521 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Deletion 16521 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Substitution 21314 67.23 27.00 29.81 -2.81 Before
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Insertion 16418 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Deletion 16418 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -147 Cycle Base Substitution 21279 242.16 22.00 29.69 -7.69 Before
REGRESSION.HCC1395_tumor.L006 -148 Cycle Base Substitution 21224 854.61 15.00 30.13 -15.13 Before
REGRESSION.HCC1395_tumor.L006 -149 Cycle Base Substitution 13203 773.54 14.00 30.35 -16.35 Before
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Substitution 26749 27.06 31.00 31.65 -0.65 Before
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Insertion 26749 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Deletion 26749 2.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -150 Cycle Base Substitution 4570 9.97 30.00 30.26 -0.26 Before
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Substitution 26748 35.54 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Insertion 26748 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Deletion 26748 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Substitution 26773 35.59 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Insertion 26773 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Deletion 26773 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Substitution 26752 38.22 30.00 31.92 -1.92 Before
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Insertion 26752 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Deletion 26752 2.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Substitution 26799 32.48 30.00 31.92 -1.92 Before
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Insertion 26799 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Deletion 26799 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -2 Cycle Base Substitution 26871 74.88 27.00 28.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Substitution 26746 38.88 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Insertion 26746 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Deletion 26746 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Substitution 26676 29.74 31.00 31.86 -0.86 Before
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Insertion 26676 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Deletion 26676 2.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Substitution 26647 32.30 30.00 31.89 -1.89 Before
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Insertion 26647 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Deletion 26647 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Substitution 26749 31.44 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Insertion 26749 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Deletion 26749 2.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Substitution 26726 41.06 30.00 31.81 -1.81 Before
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Insertion 26726 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Deletion 26726 2.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Substitution 26701 27.59 31.00 32.17 -1.17 Before
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Insertion 26701 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Deletion 26701 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Substitution 26714 39.86 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Insertion 26714 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Deletion 26714 2.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Substitution 26663 26.33 30.00 30.06 -0.06 Before
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Insertion 26663 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Deletion 26663 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Substitution 26691 38.69 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Insertion 26691 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Deletion 26691 1.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Substitution 26484 36.18 30.00 30.00 -0.00 Before
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Insertion 26484 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Deletion 26484 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -3 Cycle Base Substitution 27043 78.71 27.00 29.59 -2.59 Before
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Substitution 26607 32.97 30.00 30.18 -0.18 Before
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Insertion 26607 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Deletion 26607 2.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Substitution 26550 45.29 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Insertion 26550 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Deletion 26550 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Substitution 26602 31.31 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Insertion 26601 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Deletion 26601 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Substitution 26555 49.09 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Insertion 26554 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Deletion 26554 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Substitution 26592 47.96 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Insertion 26591 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Deletion 26591 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Substitution 26653 29.97 30.00 30.47 -0.47 Before
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Insertion 26649 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Deletion 26649 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Substitution 26579 44.70 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Insertion 26576 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Deletion 26576 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Substitution 26633 28.63 30.00 30.56 -0.56 Before
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Insertion 26629 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Deletion 26629 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Substitution 26558 35.82 30.00 30.26 -0.26 Before
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Insertion 26554 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Deletion 26554 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Substitution 26586 27.77 30.00 30.41 -0.41 Before
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Insertion 26585 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Deletion 26585 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -4 Cycle Base Substitution 26823 74.42 28.00 30.02 -2.02 Before
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Substitution 26501 30.46 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Insertion 26498 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Deletion 26498 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Substitution 26540 45.13 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Insertion 26537 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Deletion 26537 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Substitution 26462 36.66 30.00 30.58 -0.58 Before
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Insertion 26459 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Deletion 26459 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Substitution 26475 33.77 30.00 30.53 -0.53 Before
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Insertion 26474 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Deletion 26474 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Substitution 26414 40.02 29.00 30.99 -1.99 Before
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Insertion 26413 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Deletion 26413 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Substitution 26456 40.81 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Insertion 26450 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Deletion 26450 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Substitution 26352 35.53 30.00 30.36 -0.36 Before
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Insertion 26347 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Deletion 26347 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Substitution 26436 41.61 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Insertion 26428 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Deletion 26428 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Substitution 26454 37.16 30.00 30.73 -0.73 Before
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Insertion 26448 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Deletion 26448 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Substitution 26445 45.07 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Insertion 26441 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Deletion 26441 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Substitution 26858 58.20 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Insertion 26858 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Deletion 26858 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Substitution 26410 46.16 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Insertion 26395 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Deletion 26395 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Substitution 26429 42.14 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Insertion 26415 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Deletion 26415 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Substitution 26425 46.24 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Insertion 26406 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Deletion 26406 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Substitution 26426 30.28 30.00 30.43 -0.43 Before
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Insertion 26400 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Deletion 26400 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Substitution 26390 38.35 29.00 30.83 -1.83 Before
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Insertion 26364 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Deletion 26364 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Substitution 26145 33.72 30.00 30.35 -0.35 Before
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Insertion 26115 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Deletion 26115 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Substitution 26382 32.23 30.00 30.95 -0.95 Before
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Insertion 26342 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Deletion 26342 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Substitution 26281 41.15 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Insertion 26244 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Deletion 26244 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Substitution 26405 36.00 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Insertion 26363 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Deletion 26363 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Substitution 26149 27.32 31.00 31.00 -0.00 Before
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Insertion 26102 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Deletion 26102 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Substitution 26847 50.31 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Insertion 26847 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Deletion 26847 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Substitution 26189 38.09 29.00 30.73 -1.73 Before
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Insertion 26140 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Deletion 26140 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Substitution 26132 33.35 30.00 30.50 -0.50 Before
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Insertion 26073 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Deletion 26073 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Substitution 26219 31.08 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Insertion 26162 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Deletion 26162 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Substitution 26321 33.33 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Insertion 26256 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Deletion 26256 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Substitution 26180 29.27 30.00 30.65 -0.65 Before
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Insertion 26112 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Deletion 26112 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Substitution 26127 46.89 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Insertion 26057 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Deletion 26057 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Substitution 26066 34.54 30.00 30.35 -0.35 Before
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Insertion 25982 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Deletion 25982 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Substitution 26086 46.16 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Insertion 26003 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Deletion 26003 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Substitution 26092 47.17 29.00 30.70 -1.70 Before
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Insertion 26012 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Deletion 26012 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Substitution 26093 26.09 30.00 30.89 -0.89 Before
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Insertion 26001 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Deletion 26001 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Substitution 26768 53.94 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Insertion 26768 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Deletion 26768 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Substitution 26095 41.60 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Insertion 26003 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Deletion 26003 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Substitution 26044 39.22 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Insertion 25934 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Deletion 25934 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Substitution 25886 45.57 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Insertion 25772 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Deletion 25772 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Substitution 25847 39.42 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Insertion 25713 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Deletion 25713 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Substitution 25909 45.93 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Insertion 25780 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Deletion 25780 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Substitution 25872 42.80 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Insertion 25743 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Deletion 25743 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Substitution 25815 31.70 30.00 30.92 -0.92 Before
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Insertion 25674 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Deletion 25674 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Substitution 25831 49.86 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Insertion 25682 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Deletion 25682 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Substitution 25711 53.64 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Insertion 25559 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Deletion 25559 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Substitution 25692 36.42 30.00 30.61 -0.61 Before
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Insertion 25530 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Deletion 25530 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Substitution 26907 45.37 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Insertion 26907 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Deletion 26907 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Substitution 25877 37.28 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Insertion 25703 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Deletion 25703 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Substitution 25663 43.93 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Insertion 25478 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Deletion 25478 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Substitution 25639 47.68 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Insertion 25449 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Deletion 25449 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Substitution 25507 41.66 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Insertion 25305 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Deletion 25305 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Substitution 25565 38.99 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Insertion 25365 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Deletion 25365 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Substitution 25458 46.57 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Insertion 25265 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Deletion 25265 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Substitution 25428 45.64 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Insertion 25233 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Deletion 25233 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Substitution 25307 47.92 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Insertion 25120 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Deletion 25120 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Substitution 25348 40.45 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Insertion 25154 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Deletion 25154 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Substitution 25324 50.86 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Insertion 25118 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Deletion 25118 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Substitution 26907 52.53 29.00 30.93 -1.93 Before
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Insertion 26907 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Deletion 26907 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Substitution 25194 49.91 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Insertion 24983 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Deletion 24983 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Substitution 25212 37.27 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Insertion 24999 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Deletion 24999 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Substitution 25065 44.75 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Insertion 24843 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Deletion 24843 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Substitution 24884 44.97 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Insertion 24659 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Deletion 24659 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Substitution 24946 51.17 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Insertion 24704 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Deletion 24704 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Substitution 24931 53.75 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Insertion 24692 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Deletion 24692 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Substitution 24843 55.31 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Insertion 24590 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Deletion 24590 2.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Substitution 24857 42.01 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Insertion 24601 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Deletion 24601 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Substitution 24868 44.86 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Insertion 24618 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Deletion 24618 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Substitution 24728 49.70 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Insertion 24484 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Deletion 24484 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 1 Cycle Base Substitution 26573 59.56 27.00 28.68 -1.68 Before
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Substitution 26910 36.69 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Insertion 26910 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Deletion 26910 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Substitution 24585 42.93 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Insertion 24346 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Deletion 24346 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Substitution 24623 37.98 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Insertion 24392 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Deletion 24392 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Substitution 24616 33.06 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Insertion 24358 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Deletion 24358 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Substitution 24628 43.21 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Insertion 24374 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Deletion 24374 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Substitution 24465 48.66 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Insertion 24231 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Deletion 24231 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Substitution 24407 40.00 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Insertion 24170 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Deletion 24170 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Substitution 24394 39.69 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Insertion 24173 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Deletion 24173 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Substitution 24303 47.27 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Insertion 24034 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Deletion 24034 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Substitution 24201 61.51 28.00 30.27 -2.27 Before
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Insertion 23940 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Deletion 23940 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Substitution 24168 49.04 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Insertion 23916 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Deletion 23916 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Substitution 26861 31.30 31.00 31.34 -0.34 Before
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Insertion 26861 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Deletion 26861 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Substitution 24027 58.43 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Insertion 23773 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Deletion 23773 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Substitution 23983 44.63 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Insertion 23733 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Deletion 23733 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Substitution 23969 40.95 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Insertion 23699 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Deletion 23699 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Substitution 23865 49.97 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Insertion 23577 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Deletion 23577 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Substitution 23932 43.15 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Insertion 23598 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Deletion 23598 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Substitution 23863 39.74 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Insertion 23558 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Deletion 23558 2.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Substitution 23814 42.51 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Insertion 23520 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Deletion 23520 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Substitution 23823 47.82 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Insertion 23532 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Deletion 23532 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Substitution 23632 51.55 29.00 30.25 -1.25 Before
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Insertion 23342 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Deletion 23342 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Substitution 23554 51.22 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Insertion 23257 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Deletion 23257 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Substitution 26811 31.22 31.00 31.00 -0.00 Before
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Insertion 26811 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Deletion 26811 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Substitution 23512 42.34 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Insertion 23205 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Deletion 23205 1.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Substitution 23494 43.25 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Insertion 23201 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Deletion 23201 2.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Substitution 23396 41.42 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Insertion 23089 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Deletion 23089 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Substitution 23229 46.45 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Insertion 22949 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Deletion 22949 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Substitution 23205 51.01 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Insertion 22927 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Deletion 22927 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Substitution 23059 35.45 29.00 29.96 -0.96 Before
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Insertion 22764 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Deletion 22764 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Substitution 23052 59.08 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Insertion 22763 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Deletion 22763 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Substitution 23032 48.17 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Insertion 22750 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Deletion 22750 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Substitution 22952 47.82 29.00 30.01 -1.01 Before
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Insertion 22664 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Deletion 22664 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Substitution 22878 53.78 28.00 29.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Insertion 22563 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Deletion 22563 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Substitution 26812 37.96 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Insertion 26812 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Deletion 26812 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Substitution 22755 36.04 29.00 29.97 -0.97 Before
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Insertion 22456 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Deletion 22456 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Substitution 22832 46.73 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Insertion 22509 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Deletion 22509 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Substitution 22815 45.75 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Insertion 22490 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Deletion 22490 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Substitution 22652 46.88 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Insertion 22366 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Deletion 22366 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Substitution 22598 42.06 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Insertion 22276 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Deletion 22276 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Substitution 22595 46.88 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Insertion 22284 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Deletion 22284 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Substitution 22388 27.87 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Insertion 22054 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Deletion 22054 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Substitution 22434 50.45 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Insertion 22114 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Deletion 22114 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Substitution 22255 41.51 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Insertion 21940 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Deletion 21940 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Substitution 22267 38.02 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Insertion 21922 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Deletion 21922 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Substitution 26846 34.62 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Insertion 26846 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Deletion 26846 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Substitution 22127 45.13 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Insertion 21803 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Deletion 21803 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Substitution 22068 52.99 28.00 29.64 -1.64 Before
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Insertion 21745 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Deletion 21745 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Substitution 21955 39.93 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Insertion 21583 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Deletion 21583 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Substitution 21848 44.41 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Insertion 21472 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Deletion 21472 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Substitution 21880 41.44 28.00 29.58 -1.58 Before
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Insertion 21531 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Deletion 21531 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Substitution 21746 39.87 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Insertion 21350 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Deletion 21350 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Substitution 21573 40.73 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Insertion 21233 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Deletion 21233 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 147 Cycle Base Substitution 21574 54.85 28.00 29.85 -1.85 Before
REGRESSION.HCC1395_tumor.L006 148 Cycle Base Substitution 21427 41.96 28.00 29.56 -1.56 Before
REGRESSION.HCC1395_tumor.L006 149 Cycle Base Substitution 21374 48.39 28.00 29.63 -1.63 Before
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Substitution 26780 34.19 30.00 31.71 -1.71 Before
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Insertion 26780 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Deletion 26780 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 150 Cycle Base Substitution 21354 47.72 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Substitution 26826 28.81 31.00 32.81 -1.81 Before
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Insertion 26826 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Deletion 26826 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Substitution 26740 25.09 32.00 32.90 -0.90 Before
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Insertion 26740 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Deletion 26740 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Substitution 26692 22.32 32.00 32.64 -0.64 Before
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Insertion 26692 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Deletion 26692 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Substitution 26604 21.65 32.00 32.69 -0.69 Before
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Insertion 26604 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Deletion 26604 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 2 Cycle Base Substitution 26860 50.93 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Substitution 26722 23.91 32.00 32.66 -0.66 Before
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Insertion 26722 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Deletion 26722 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Substitution 26715 26.97 32.00 33.59 -1.59 Before
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Insertion 26715 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Deletion 26715 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Substitution 26632 20.81 33.00 33.20 -0.20 Before
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Insertion 26632 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Deletion 26632 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Substitution 26656 13.47 33.00 33.16 -0.16 Before
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Insertion 26656 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Deletion 26656 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Substitution 26668 17.79 33.00 33.20 -0.20 Before
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Insertion 26668 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Deletion 26668 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Substitution 26612 29.53 31.00 32.72 -1.72 Before
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Insertion 26612 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Deletion 26612 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Substitution 26720 24.72 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Insertion 26720 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Deletion 26720 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Substitution 26625 27.81 31.00 31.28 -0.28 Before
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Insertion 26625 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Deletion 26625 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Substitution 26738 34.50 30.00 31.78 -1.78 Before
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Insertion 26738 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Deletion 26738 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Substitution 26612 35.20 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Insertion 26612 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Deletion 26612 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 3 Cycle Base Substitution 26960 47.06 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Substitution 26740 31.44 31.00 31.68 -0.68 Before
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Insertion 26738 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Deletion 26738 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Substitution 26741 29.21 31.00 32.12 -1.12 Before
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Insertion 26739 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Deletion 26739 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Substitution 26468 43.61 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Insertion 26466 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Deletion 26466 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Substitution 26551 28.67 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Insertion 26550 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Deletion 26550 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Substitution 26585 24.36 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Insertion 26585 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Deletion 26585 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Substitution 26557 29.82 31.00 31.74 -0.74 Before
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Insertion 26557 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Deletion 26557 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Substitution 26607 26.71 31.00 31.83 -0.83 Before
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Insertion 26607 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Deletion 26607 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Substitution 26550 23.25 31.00 31.91 -0.91 Before
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Insertion 26549 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Deletion 26549 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Substitution 26599 24.01 31.00 31.85 -0.85 Before
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Insertion 26597 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Deletion 26597 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Substitution 26535 25.33 31.00 31.90 -0.90 Before
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Insertion 26534 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Deletion 26534 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 4 Cycle Base Substitution 26983 62.34 29.00 31.02 -2.02 Before
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Substitution 26458 20.94 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Insertion 26456 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Deletion 26456 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Substitution 26598 25.55 31.00 31.47 -0.47 Before
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Insertion 26595 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Deletion 26595 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Substitution 26373 28.27 31.00 31.52 -0.52 Before
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Insertion 26372 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Deletion 26372 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Substitution 26473 37.09 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Insertion 26472 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Deletion 26472 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Substitution 26479 28.79 31.00 31.50 -0.50 Before
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Insertion 26479 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Deletion 26479 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Substitution 26488 32.69 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Insertion 26486 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Deletion 26486 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Substitution 26410 39.48 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Insertion 26406 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Deletion 26406 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Substitution 26482 31.95 30.00 31.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Insertion 26475 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Deletion 26475 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Substitution 26426 26.06 31.00 31.62 -0.62 Before
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Insertion 26417 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Deletion 26417 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Substitution 26485 31.63 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Insertion 26479 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Deletion 26479 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Substitution 26897 42.10 30.00 31.31 -1.31 Before
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Insertion 26897 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Deletion 26897 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Substitution 26373 27.83 31.00 31.85 -0.85 Before
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Insertion 26362 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Deletion 26362 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Substitution 26363 51.10 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Insertion 26350 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Deletion 26350 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Substitution 26395 31.46 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Insertion 26376 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Deletion 26376 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Substitution 26455 35.85 30.00 31.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Insertion 26430 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Deletion 26430 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Substitution 26344 33.18 30.00 31.89 -1.89 Before
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Insertion 26315 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Deletion 26315 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Substitution 26347 28.10 31.00 31.70 -0.70 Before
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Insertion 26316 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Deletion 26316 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Substitution 26468 40.18 30.00 31.69 -1.69 Before
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Insertion 26429 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Deletion 26429 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Substitution 26252 36.09 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Insertion 26219 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Deletion 26219 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Substitution 26294 33.64 30.00 31.87 -1.87 Before
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Insertion 26260 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Deletion 26260 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Substitution 26419 32.81 30.00 31.40 -1.40 Before
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Insertion 26376 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Deletion 26376 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Substitution 26963 30.74 31.00 31.04 -0.04 Before
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Insertion 26963 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Deletion 26963 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Substitution 26222 30.92 31.00 31.14 -0.14 Before
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Insertion 26172 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Deletion 26172 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Substitution 26290 46.65 30.00 31.68 -1.68 Before
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Insertion 26232 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Deletion 26232 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Substitution 26269 33.47 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Insertion 26208 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Deletion 26208 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Substitution 26221 41.93 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Insertion 26154 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Deletion 26154 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Substitution 26240 32.46 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Insertion 26166 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Deletion 26166 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Substitution 26217 35.70 30.00 31.26 -1.26 Before
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Insertion 26151 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Deletion 26151 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Substitution 26185 27.84 31.00 31.62 -0.62 Before
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Insertion 26102 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Deletion 26102 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Substitution 26123 35.51 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Insertion 26039 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Deletion 26039 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Substitution 26151 33.78 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Insertion 26066 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Deletion 26066 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Substitution 26266 29.14 31.00 31.42 -0.42 Before
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Insertion 26180 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Deletion 26180 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Substitution 26775 28.37 31.00 31.14 -0.14 Before
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Insertion 26775 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Deletion 26775 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Substitution 25996 36.37 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Insertion 25910 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Deletion 25910 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Substitution 26016 35.01 30.00 31.88 -1.88 Before
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Insertion 25914 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Deletion 25914 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Substitution 26025 26.61 31.00 31.45 -0.45 Before
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Insertion 25921 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Deletion 25921 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Substitution 26018 40.67 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Insertion 25900 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Deletion 25900 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Substitution 25902 36.82 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Insertion 25777 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Deletion 25777 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Substitution 25934 35.00 30.00 31.15 -1.15 Before
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Insertion 25809 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Deletion 25809 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Substitution 25911 39.57 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Insertion 25778 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Deletion 25778 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Substitution 25800 37.42 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Insertion 25667 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Deletion 25667 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Substitution 25800 40.83 29.00 30.99 -1.99 Before
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Insertion 25653 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Deletion 25653 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Substitution 25803 51.77 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Insertion 25649 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Deletion 25649 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Substitution 26789 39.70 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Insertion 26789 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Deletion 26789 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Substitution 25781 30.85 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Insertion 25610 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Deletion 25610 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Substitution 25621 34.63 30.00 30.88 -0.88 Before
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Insertion 25443 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Deletion 25443 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Substitution 25658 32.08 30.00 31.01 -1.01 Before
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Insertion 25479 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Deletion 25479 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Substitution 25553 34.37 30.00 30.90 -0.90 Before
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Insertion 25354 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Deletion 25354 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Substitution 25583 45.13 29.00 30.97 -1.97 Before
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Insertion 25383 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Deletion 25383 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Substitution 25489 41.60 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Insertion 25294 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Deletion 25294 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Substitution 25484 39.24 30.00 31.14 -1.14 Before
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Insertion 25296 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Deletion 25296 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Substitution 25446 34.97 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Insertion 25248 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Deletion 25248 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Substitution 25340 34.81 30.00 30.85 -0.85 Before
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Insertion 25138 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Deletion 25138 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Substitution 25351 43.95 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Insertion 25144 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Deletion 25144 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Substitution 26843 35.57 30.00 30.93 -0.93 Before
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Insertion 26843 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Deletion 26843 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Substitution 25298 42.77 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Insertion 25093 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Deletion 25093 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Substitution 25345 46.23 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Insertion 25143 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Deletion 25143 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Substitution 25098 34.71 30.00 30.76 -0.76 Before
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Insertion 24873 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Deletion 24873 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Substitution 24946 42.44 29.00 30.88 -1.88 Before
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Insertion 24719 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Deletion 24719 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Substitution 25087 43.99 29.00 30.43 -1.43 Before
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Insertion 24851 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Deletion 24851 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Substitution 24915 26.68 30.00 30.92 -0.92 Before
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Insertion 24655 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Deletion 24655 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Substitution 24855 39.54 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Insertion 24596 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Deletion 24596 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Substitution 24834 40.02 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Insertion 24582 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Deletion 24582 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Substitution 24786 40.46 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Insertion 24541 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Deletion 24541 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Substitution 24741 46.03 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Insertion 24503 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Deletion 24503 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 12 QualityScore Base Substitution 80123 7733.55 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L006 24 QualityScore Base Substitution 196365 735.77 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L006 40 QualityScore Base Substitution 7245917 5438.62 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L006 45 QualityScore Base Insertion 7522405 128.16 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L006 45 QualityScore Base Deletion 7522405 357.09 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L007 AA Context Base Substitution 525729 1307.89 26.00 29.74 -3.74 Before
REGRESSION.HCC1395_tumor.L007 AAA Context Base Insertion 178084 22.53 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L007 AAA Context Base Deletion 178084 64.31 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L007 AAC Context Base Insertion 86227 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAC Context Base Deletion 86227 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAG Context Base Insertion 133741 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAG Context Base Deletion 133741 4.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAT Context Base Insertion 102304 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AAT Context Base Deletion 102304 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AC Context Base Substitution 358696 1194.15 25.00 28.60 -3.60 Before
REGRESSION.HCC1395_tumor.L007 ACA Context Base Insertion 132700 4.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACA Context Base Deletion 132700 4.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACC Context Base Insertion 105301 2.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACC Context Base Deletion 105301 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACG Context Base Insertion 20986 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACG Context Base Deletion 20986 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACT Context Base Insertion 105570 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ACT Context Base Deletion 105570 6.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AG Context Base Substitution 561597 583.96 30.00 31.82 -1.82 Before
REGRESSION.HCC1395_tumor.L007 AGA Context Base Insertion 151971 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGA Context Base Deletion 151971 4.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGC Context Base Insertion 140039 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGC Context Base Deletion 140039 5.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGG Context Base Insertion 163282 4.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGG Context Base Deletion 163282 4.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGT Context Base Insertion 102494 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AGT Context Base Deletion 102494 2.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 AT Context Base Substitution 372161 465.78 29.00 32.09 -3.09 Before
REGRESSION.HCC1395_tumor.L007 ATA Context Base Insertion 75474 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATA Context Base Deletion 75474 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATC Context Base Insertion 79250 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATC Context Base Deletion 79250 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATG Context Base Insertion 115442 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATG Context Base Deletion 115442 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATT Context Base Insertion 110004 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 ATT Context Base Deletion 110004 2.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CA Context Base Substitution 595135 1284.01 27.00 29.87 -2.87 Before
REGRESSION.HCC1395_tumor.L007 CAA Context Base Insertion 112411 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAA Context Base Deletion 112411 3.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAC Context Base Insertion 125115 4.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAC Context Base Deletion 125115 4.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAG Context Base Insertion 213537 3.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAG Context Base Deletion 213537 10.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAT Context Base Insertion 112025 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CAT Context Base Deletion 112025 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CC Context Base Substitution 552787 1734.77 25.00 28.90 -3.90 Before
REGRESSION.HCC1395_tumor.L007 CCA Context Base Insertion 176069 2.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCA Context Base Deletion 176069 2.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCC Context Base Insertion 151583 4.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCC Context Base Deletion 151583 9.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCG Context Base Insertion 38081 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCG Context Base Deletion 38081 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCT Context Base Insertion 178215 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CCT Context Base Deletion 178215 6.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CG Context Base Substitution 114960 346.41 26.00 29.88 -3.88 Before
REGRESSION.HCC1395_tumor.L007 CGA Context Base Insertion 44860 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGA Context Base Deletion 44860 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGC Context Base Insertion 64124 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGC Context Base Deletion 64124 2.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGG Context Base Insertion 78371 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGG Context Base Deletion 78371 3.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGT Context Base Insertion 49460 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CGT Context Base Deletion 49460 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CT Context Base Substitution 598434 410.78 32.00 32.56 -0.56 Before
REGRESSION.HCC1395_tumor.L007 CTA Context Base Insertion 58736 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTA Context Base Deletion 58736 4.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTC Context Base Insertion 147007 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTC Context Base Deletion 147007 9.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTG Context Base Insertion 214557 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTG Context Base Deletion 214557 6.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTT Context Base Insertion 146301 6.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 CTT Context Base Deletion 146301 5.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GA Context Base Substitution 497444 843.78 28.00 29.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 GAA Context Base Insertion 142175 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAA Context Base Deletion 142175 2.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAC Context Base Insertion 84319 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAC Context Base Deletion 84319 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAG Context Base Insertion 149787 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAG Context Base Deletion 149787 3.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAT Context Base Insertion 83978 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GAT Context Base Deletion 83978 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GC Context Base Substitution 489127 1132.05 27.00 30.28 -3.28 Before
REGRESSION.HCC1395_tumor.L007 GCA Context Base Insertion 148621 3.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCA Context Base Deletion 148621 2.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCC Context Base Insertion 146740 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCC Context Base Deletion 146740 7.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCG Context Base Insertion 36682 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCG Context Base Deletion 36682 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCT Context Base Insertion 156315 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GCT Context Base Deletion 156315 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GG Context Base Substitution 578128 772.85 29.00 31.73 -2.73 Before
REGRESSION.HCC1395_tumor.L007 GGA Context Base Insertion 156695 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGA Context Base Deletion 156695 5.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGC Context Base Insertion 145030 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGC Context Base Deletion 145030 4.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGG Context Base Insertion 158506 6.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGG Context Base Deletion 158506 9.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGT Context Base Insertion 115600 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GGT Context Base Deletion 115600 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GT Context Base Substitution 409079 674.72 28.00 32.11 -4.11 Before
REGRESSION.HCC1395_tumor.L007 GTA Context Base Insertion 66402 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTA Context Base Deletion 66402 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTC Context Base Insertion 91462 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTC Context Base Deletion 91462 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTG Context Base Insertion 140186 3.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTG Context Base Deletion 140186 4.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTT Context Base Insertion 100240 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 GTT Context Base Deletion 100240 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TA Context Base Substitution 290906 834.66 26.00 29.70 -3.70 Before
REGRESSION.HCC1395_tumor.L007 TAA Context Base Insertion 88605 2.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAA Context Base Deletion 88605 4.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAC Context Base Insertion 60677 0.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAC Context Base Deletion 60677 4.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAG Context Base Insertion 60244 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAG Context Base Deletion 60244 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAT Context Base Insertion 71097 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TAT Context Base Deletion 71097 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TC Context Base Substitution 451210 1010.94 27.00 30.48 -3.48 Before
REGRESSION.HCC1395_tumor.L007 TCA Context Base Insertion 133050 2.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCA Context Base Deletion 133050 5.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCC Context Base Insertion 145428 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCC Context Base Deletion 145428 2.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCG Context Base Insertion 18366 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCG Context Base Deletion 18366 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCT Context Base Insertion 154350 2.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TCT Context Base Deletion 154350 9.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TG Context Base Substitution 588327 459.49 31.00 31.82 -0.82 Before
REGRESSION.HCC1395_tumor.L007 TGA Context Base Insertion 140049 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGA Context Base Deletion 140049 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGC Context Base Insertion 136803 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGC Context Base Deletion 136803 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGG Context Base Insertion 173603 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGG Context Base Deletion 173603 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGT Context Base Insertion 138732 2.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TGT Context Base Deletion 138732 4.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TT Context Base Substitution 540859 685.29 29.00 32.96 -3.96 Before
REGRESSION.HCC1395_tumor.L007 TTA Context Base Insertion 88052 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTA Context Base Deletion 88052 3.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTC Context Base Insertion 130832 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTC Context Base Deletion 130832 5.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTG Context Base Insertion 113873 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTG Context Base Deletion 113873 2.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 TTT Context Base Insertion 180677 19.17 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L007 TTT Context Base Deletion 180677 58.44 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L007 -1 Cycle Base Substitution 26794 97.87 25.00 25.85 -0.85 Before
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Substitution 27066 41.09 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Insertion 27066 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Deletion 27066 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Substitution 24965 34.68 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Insertion 24717 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Deletion 24717 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Substitution 24790 47.31 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Insertion 24544 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Deletion 24544 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Substitution 24840 39.81 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Insertion 24579 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Deletion 24579 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Substitution 24752 43.34 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Insertion 24513 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Deletion 24513 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Substitution 24806 33.96 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Insertion 24538 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Deletion 24538 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Substitution 24659 46.01 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Insertion 24378 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Deletion 24378 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Substitution 24577 44.67 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Insertion 24288 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Deletion 24288 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Substitution 24547 30.95 30.00 30.31 -0.31 Before
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Insertion 24252 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Deletion 24252 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Substitution 24520 34.50 30.00 30.29 -0.29 Before
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Insertion 24237 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Deletion 24237 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Substitution 24392 45.47 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Insertion 24107 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Deletion 24107 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Substitution 26970 39.48 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Insertion 26970 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Deletion 26970 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Substitution 24322 40.38 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Insertion 24050 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Deletion 24050 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Substitution 24212 37.64 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Insertion 23943 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Deletion 23943 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Substitution 24284 43.53 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Insertion 24001 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Deletion 24001 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Substitution 24189 54.15 29.00 30.10 -1.10 Before
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Insertion 23910 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Deletion 23910 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Substitution 24120 53.16 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Insertion 23834 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Deletion 23834 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Substitution 24013 51.94 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Insertion 23713 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Deletion 23713 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Substitution 23945 45.56 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Insertion 23646 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Deletion 23646 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Substitution 23765 53.53 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Insertion 23485 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Deletion 23485 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Substitution 23741 51.19 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Insertion 23440 0.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Deletion 23440 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Substitution 23662 58.22 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Insertion 23385 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Deletion 23385 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Substitution 27095 34.27 30.00 31.84 -1.84 Before
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Insertion 27095 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Deletion 27095 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Substitution 23613 57.94 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Insertion 23323 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Deletion 23323 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Substitution 23415 51.94 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Insertion 23114 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Deletion 23114 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Substitution 23528 44.35 28.00 29.89 -1.89 Before
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Insertion 23235 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Deletion 23235 1.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Substitution 23533 45.35 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Insertion 23216 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Deletion 23216 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Substitution 23434 45.15 28.00 29.86 -1.86 Before
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Insertion 23115 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Deletion 23115 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Substitution 23273 38.91 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Insertion 22963 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Deletion 22963 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Substitution 23239 43.90 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Insertion 22942 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Deletion 22942 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Substitution 23180 56.00 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Insertion 22865 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Deletion 22865 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Substitution 23176 43.83 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Insertion 22866 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Deletion 22866 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Substitution 23058 35.73 29.00 29.93 -0.93 Before
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Insertion 22735 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Deletion 22735 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Substitution 26959 41.43 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Insertion 26959 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Deletion 26959 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Substitution 23001 55.71 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Insertion 22661 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Deletion 22661 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Substitution 23024 43.78 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Insertion 22676 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Deletion 22676 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Substitution 22852 43.02 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Insertion 22503 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Deletion 22503 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Substitution 22870 43.91 28.00 29.60 -1.60 Before
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Insertion 22543 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Deletion 22543 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Substitution 22718 47.03 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Insertion 22376 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Deletion 22376 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Substitution 22669 44.02 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Insertion 22350 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Deletion 22350 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Substitution 22562 46.08 28.00 29.68 -1.68 Before
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Insertion 22231 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Deletion 22231 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Substitution 22513 52.13 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Insertion 22172 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Deletion 22172 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Substitution 22440 41.35 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Insertion 22104 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Deletion 22104 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Substitution 22275 40.23 28.00 29.88 -1.88 Before
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Insertion 21910 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Deletion 21910 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Substitution 26998 53.75 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Insertion 26998 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Deletion 26998 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Substitution 22241 47.07 28.00 29.66 -1.66 Before
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Insertion 21883 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Deletion 21883 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Substitution 22260 40.26 28.00 29.65 -1.65 Before
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Insertion 21891 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Deletion 21891 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Substitution 22102 37.73 29.00 29.88 -0.88 Before
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Insertion 21705 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Deletion 21705 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Substitution 21961 29.04 29.00 29.77 -0.77 Before
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Insertion 21548 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Deletion 21548 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Substitution 21959 29.34 29.00 29.57 -0.57 Before
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Insertion 21485 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Deletion 21485 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Substitution 21849 41.62 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Insertion 16823 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Deletion 16823 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Substitution 21639 67.53 28.00 30.10 -2.10 Before
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Insertion 16677 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Deletion 16677 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -147 Cycle Base Substitution 21643 232.47 23.00 29.88 -6.88 Before
REGRESSION.HCC1395_tumor.L007 -148 Cycle Base Substitution 21501 824.53 16.00 29.87 -13.87 Before
REGRESSION.HCC1395_tumor.L007 -149 Cycle Base Substitution 13325 753.04 14.00 30.68 -16.68 Before
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Substitution 27007 41.60 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Insertion 27007 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Deletion 27007 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -150 Cycle Base Substitution 4705 7.61 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Substitution 27094 39.00 30.00 31.60 -1.60 Before
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Insertion 27094 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Deletion 27094 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Substitution 27004 43.58 30.00 31.99 -1.99 Before
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Insertion 27004 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Deletion 27004 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Substitution 27053 36.16 30.00 31.85 -1.85 Before
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Insertion 27053 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Deletion 27053 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Substitution 27095 46.52 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Insertion 27095 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Deletion 27095 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -2 Cycle Base Substitution 27047 70.41 27.00 28.67 -1.67 Before
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Substitution 27031 35.42 31.00 32.02 -1.02 Before
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Insertion 27031 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Deletion 27031 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Substitution 26901 37.14 30.00 31.96 -1.96 Before
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Insertion 26901 1.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Deletion 26901 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Substitution 26924 33.99 30.00 31.94 -1.94 Before
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Insertion 26924 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Deletion 26924 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Substitution 27047 39.69 30.00 31.62 -1.62 Before
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Insertion 27047 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Deletion 27047 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Substitution 26879 35.38 30.00 31.70 -1.70 Before
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Insertion 26879 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Deletion 26879 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Substitution 26944 41.04 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Insertion 26944 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Deletion 26944 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Substitution 26868 46.02 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Insertion 26868 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Deletion 26868 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Substitution 26892 39.82 29.00 29.97 -0.97 Before
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Insertion 26891 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Deletion 26891 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Substitution 26832 44.19 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Insertion 26830 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Deletion 26830 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Substitution 27013 35.70 30.00 30.25 -0.25 Before
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Insertion 27010 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Deletion 27010 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -3 Cycle Base Substitution 27194 67.89 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Substitution 26835 40.47 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Insertion 26831 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Deletion 26831 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Substitution 26736 44.85 29.00 30.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Insertion 26732 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Deletion 26732 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Substitution 26815 31.81 30.00 30.50 -0.50 Before
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Insertion 26812 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Deletion 26812 2.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Substitution 26857 48.42 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Insertion 26854 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Deletion 26854 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Substitution 26807 29.64 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Insertion 26806 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Deletion 26806 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Substitution 26889 44.01 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Insertion 26888 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Deletion 26888 1.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Substitution 26928 36.60 30.00 30.15 -0.15 Before
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Insertion 26926 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Deletion 26926 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Substitution 26860 36.28 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Insertion 26859 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Deletion 26859 2.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Substitution 26767 44.65 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Insertion 26765 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Deletion 26765 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Substitution 26821 40.00 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Insertion 26819 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Deletion 26819 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -4 Cycle Base Substitution 27106 81.12 27.00 29.93 -2.93 Before
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Substitution 26789 30.93 30.00 30.29 -0.29 Before
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Insertion 26787 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Deletion 26787 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Substitution 26823 30.76 30.00 30.40 -0.40 Before
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Insertion 26820 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Deletion 26820 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Substitution 26867 29.90 30.00 30.51 -0.51 Before
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Insertion 26863 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Deletion 26863 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Substitution 26743 47.84 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Insertion 26737 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Deletion 26737 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Substitution 26826 30.03 30.00 30.59 -0.59 Before
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Insertion 26824 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Deletion 26824 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Substitution 26781 36.06 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Insertion 26774 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Deletion 26774 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Substitution 26761 36.92 30.00 30.13 -0.13 Before
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Insertion 26756 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Deletion 26756 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Substitution 26786 43.43 29.00 30.57 -1.57 Before
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Insertion 26778 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Deletion 26778 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Substitution 26748 39.86 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Insertion 26737 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Deletion 26737 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Substitution 26674 33.84 30.00 30.58 -0.58 Before
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Insertion 26666 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Deletion 26666 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Substitution 27231 47.51 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Insertion 27231 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Deletion 27231 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Substitution 26722 37.99 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Insertion 26704 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Deletion 26704 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Substitution 26691 43.56 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Insertion 26668 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Deletion 26668 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Substitution 26533 39.47 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Insertion 26507 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Deletion 26507 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Substitution 26568 39.27 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Insertion 26540 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Deletion 26540 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Substitution 26656 49.79 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Insertion 26624 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Deletion 26624 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Substitution 26714 41.57 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Insertion 26674 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Deletion 26674 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Substitution 26690 45.45 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Insertion 26657 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Deletion 26657 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Substitution 26544 39.26 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Insertion 26491 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Deletion 26491 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Substitution 26556 34.73 30.00 30.79 -0.79 Before
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Insertion 26510 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Deletion 26510 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Substitution 26616 46.96 29.00 30.59 -1.59 Before
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Insertion 26569 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Deletion 26569 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Substitution 27075 45.63 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Insertion 27075 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Deletion 27075 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Substitution 26549 51.86 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Insertion 26488 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Deletion 26488 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Substitution 26431 38.10 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Insertion 26383 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Deletion 26383 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Substitution 26473 42.87 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Insertion 26420 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Deletion 26420 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Substitution 26383 33.61 30.00 30.70 -0.70 Before
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Insertion 26330 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Deletion 26330 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Substitution 26394 40.23 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Insertion 26337 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Deletion 26337 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Substitution 26348 37.07 30.00 30.75 -0.75 Before
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Insertion 26270 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Deletion 26270 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Substitution 26426 39.00 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Insertion 26345 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Deletion 26345 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Substitution 26477 47.07 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Insertion 26391 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Deletion 26391 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Substitution 26461 36.55 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Insertion 26371 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Deletion 26371 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Substitution 26398 40.58 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Insertion 26309 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Deletion 26309 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Substitution 27003 51.13 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Insertion 27003 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Deletion 27003 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Substitution 26263 34.24 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Insertion 26167 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Deletion 26167 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Substitution 26211 39.29 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Insertion 26124 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Deletion 26124 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Substitution 26154 47.02 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Insertion 26048 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Deletion 26048 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Substitution 26242 44.18 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Insertion 26124 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Deletion 26124 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Substitution 26099 40.08 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Insertion 25975 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Deletion 25975 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Substitution 26158 44.48 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Insertion 26035 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Deletion 26035 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Substitution 26088 40.17 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Insertion 25966 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Deletion 25966 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Substitution 26072 37.20 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Insertion 25950 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Deletion 25950 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Substitution 25968 41.74 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Insertion 25831 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Deletion 25831 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Substitution 25966 53.52 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Insertion 25827 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Deletion 25827 2.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Substitution 27113 37.48 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Insertion 27113 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Deletion 27113 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Substitution 25952 38.02 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Insertion 25798 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Deletion 25798 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Substitution 25916 41.35 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Insertion 25764 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Deletion 25764 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Substitution 25881 38.78 29.00 30.33 -1.33 Before
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Insertion 25696 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Deletion 25696 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Substitution 25853 41.18 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Insertion 25674 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Deletion 25674 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Substitution 25749 48.57 29.00 30.58 -1.58 Before
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Insertion 25571 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Deletion 25571 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Substitution 25835 43.04 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Insertion 25655 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Deletion 25655 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Substitution 25813 36.36 30.00 30.79 -0.79 Before
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Insertion 25639 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Deletion 25639 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Substitution 25581 45.47 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Insertion 25409 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Deletion 25409 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Substitution 25674 45.90 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Insertion 25475 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Deletion 25475 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Substitution 25717 59.89 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Insertion 25510 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Deletion 25510 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Substitution 26973 44.89 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Insertion 26973 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Deletion 26973 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Substitution 25623 38.12 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Insertion 25405 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Deletion 25405 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Substitution 25487 47.22 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Insertion 25244 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Deletion 25244 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Substitution 25452 45.65 29.00 30.11 -1.11 Before
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Insertion 25220 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Deletion 25220 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Substitution 25391 38.23 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Insertion 25157 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Deletion 25157 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Substitution 25340 47.47 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Insertion 25123 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Deletion 25123 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Substitution 25288 51.97 29.00 30.07 -1.07 Before
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Insertion 25077 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Deletion 25077 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Substitution 25354 55.56 29.00 30.27 -1.27 Before
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Insertion 25138 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Deletion 25138 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Substitution 25155 45.35 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Insertion 24948 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Deletion 24948 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Substitution 25063 40.70 29.00 30.53 -1.53 Before
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Insertion 24841 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Deletion 24841 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Substitution 25030 46.34 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Insertion 24790 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Deletion 24790 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 1 Cycle Base Substitution 26614 59.28 27.00 28.88 -1.88 Before
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Substitution 26979 31.23 31.00 31.26 -0.26 Before
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Insertion 26979 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Deletion 26979 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Substitution 24851 22.76 30.00 30.55 -0.55 Before
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Insertion 24605 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Deletion 24605 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Substitution 24824 39.26 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Insertion 24577 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Deletion 24577 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Substitution 24795 41.61 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Insertion 24541 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Deletion 24541 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Substitution 24709 44.63 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Insertion 24462 1.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Deletion 24462 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Substitution 24742 42.07 29.00 30.47 -1.47 Before
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Insertion 24480 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Deletion 24480 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Substitution 24604 34.11 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Insertion 24337 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Deletion 24337 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Substitution 24542 47.53 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Insertion 24269 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Deletion 24269 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Substitution 24427 49.10 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Insertion 24138 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Deletion 24138 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Substitution 24410 44.57 29.00 30.50 -1.50 Before
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Insertion 24130 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Deletion 24130 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Substitution 24316 44.41 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Insertion 24034 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Deletion 24034 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Substitution 27023 30.64 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Insertion 27023 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Deletion 27023 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Substitution 24138 37.77 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Insertion 23877 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Deletion 23877 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Substitution 24241 35.72 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Insertion 23973 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Deletion 23973 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Substitution 24134 45.79 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Insertion 23857 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Deletion 23857 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Substitution 24143 39.42 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Insertion 23862 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Deletion 23862 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Substitution 23986 45.22 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Insertion 23713 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Deletion 23713 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Substitution 23998 36.59 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Insertion 23694 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Deletion 23694 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Substitution 23935 39.82 29.00 30.62 -1.62 Before
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Insertion 23629 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Deletion 23629 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Substitution 23806 33.66 30.00 30.41 -0.41 Before
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Insertion 23504 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Deletion 23504 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Substitution 23777 49.36 28.00 29.83 -1.83 Before
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Insertion 23480 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Deletion 23480 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Substitution 23834 47.73 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Insertion 23547 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Deletion 23547 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Substitution 26895 32.65 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Insertion 26895 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Deletion 26895 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Substitution 23676 41.25 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Insertion 23386 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Deletion 23386 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Substitution 23528 33.98 30.00 30.05 -0.05 Before
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Insertion 23222 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Deletion 23222 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Substitution 23595 54.14 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Insertion 23300 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Deletion 23300 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Substitution 23440 36.89 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Insertion 23137 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Deletion 23137 1.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Substitution 23319 37.65 29.00 29.79 -0.79 Before
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Insertion 23022 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Deletion 23022 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Substitution 23334 51.28 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Insertion 23022 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Deletion 23022 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Substitution 23256 37.12 29.00 30.26 -1.26 Before
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Insertion 22966 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Deletion 22966 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Substitution 23132 53.61 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Insertion 22827 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Deletion 22827 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Substitution 22906 49.15 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Insertion 22615 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Deletion 22615 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Substitution 22922 50.93 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Insertion 22621 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Deletion 22621 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Substitution 26888 33.72 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Insertion 26888 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Deletion 26888 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Substitution 22954 50.20 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Insertion 22628 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Deletion 22628 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Substitution 22918 53.50 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Insertion 22569 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Deletion 22569 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Substitution 22888 39.93 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Insertion 22555 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Deletion 22555 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Substitution 22675 47.13 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Insertion 22347 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Deletion 22347 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Substitution 22651 37.86 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Insertion 22344 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Deletion 22344 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Substitution 22533 49.96 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Insertion 22239 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Deletion 22239 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Substitution 22426 50.56 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Insertion 22113 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Deletion 22113 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Substitution 22498 52.77 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Insertion 22171 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Deletion 22171 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Substitution 22386 35.75 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Insertion 22081 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Deletion 22081 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Substitution 22375 52.16 28.00 29.97 -1.97 Before
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Insertion 22028 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Deletion 22028 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Substitution 26877 29.22 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Insertion 26877 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Deletion 26877 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Substitution 22290 41.14 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Insertion 21971 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Deletion 21971 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Substitution 22198 42.54 28.00 29.99 -1.99 Before
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Insertion 21879 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Deletion 21879 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Substitution 22010 41.73 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Insertion 21648 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Deletion 21648 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Substitution 22095 41.66 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Insertion 21775 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Deletion 21775 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Substitution 22000 47.36 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Insertion 21641 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Deletion 21641 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Substitution 21803 38.87 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Insertion 21427 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Deletion 21427 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Substitution 21823 48.25 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Insertion 21475 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Deletion 21475 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 147 Cycle Base Substitution 21700 45.09 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L007 148 Cycle Base Substitution 21613 46.97 29.00 30.17 -1.17 Before
REGRESSION.HCC1395_tumor.L007 149 Cycle Base Substitution 21420 50.31 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Substitution 26790 28.05 31.00 31.40 -0.40 Before
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Insertion 26790 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Deletion 26790 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 150 Cycle Base Substitution 21360 42.48 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Substitution 26788 20.33 32.00 32.85 -0.85 Before
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Insertion 26788 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Deletion 26788 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Substitution 26792 31.16 31.00 32.49 -1.49 Before
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Insertion 26792 0.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Deletion 26792 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Substitution 26771 23.05 32.00 32.98 -0.98 Before
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Insertion 26771 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Deletion 26771 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Substitution 26965 20.39 33.00 33.08 -0.08 Before
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Insertion 26965 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Deletion 26965 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 2 Cycle Base Substitution 27040 49.01 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Substitution 26907 20.11 32.00 32.66 -0.66 Before
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Insertion 26907 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Deletion 26907 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Substitution 26842 29.34 31.00 32.62 -1.62 Before
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Insertion 26842 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Deletion 26842 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Substitution 26782 21.11 32.00 32.98 -0.98 Before
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Insertion 26782 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Deletion 26782 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Substitution 26820 20.12 33.00 33.08 -0.08 Before
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Insertion 26820 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Deletion 26820 2.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Substitution 26692 19.08 33.00 33.04 -0.04 Before
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Insertion 26692 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Deletion 26692 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Substitution 26650 23.12 32.00 33.08 -1.08 Before
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Insertion 26650 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Deletion 26650 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Substitution 26742 27.69 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Insertion 26742 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Deletion 26742 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Substitution 26706 33.75 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Insertion 26706 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Deletion 26706 2.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Substitution 26733 30.32 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Insertion 26733 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Deletion 26733 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Substitution 26777 26.25 31.00 31.37 -0.37 Before
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Insertion 26777 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Deletion 26777 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 3 Cycle Base Substitution 26924 57.56 29.00 30.85 -1.85 Before
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Substitution 26692 28.14 31.00 31.53 -0.53 Before
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Insertion 26692 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Deletion 26692 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Substitution 26742 30.71 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Insertion 26741 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Deletion 26741 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Substitution 26712 41.08 30.00 31.81 -1.81 Before
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Insertion 26712 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Deletion 26712 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Substitution 26785 38.53 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Insertion 26784 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Deletion 26784 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Substitution 26766 29.06 31.00 31.67 -0.67 Before
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Insertion 26766 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Deletion 26766 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Substitution 26596 41.10 30.00 31.80 -1.80 Before
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Insertion 26596 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Deletion 26596 1.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Substitution 26684 35.20 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Insertion 26683 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Deletion 26683 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Substitution 26775 32.16 30.00 31.72 -1.72 Before
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Insertion 26774 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Deletion 26774 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Substitution 26682 29.54 31.00 31.89 -0.89 Before
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Insertion 26681 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Deletion 26681 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Substitution 26516 34.65 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Insertion 26515 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Deletion 26515 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 4 Cycle Base Substitution 26966 65.88 28.00 30.92 -2.92 Before
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Substitution 26601 33.27 30.00 31.42 -1.42 Before
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Insertion 26599 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Deletion 26599 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Substitution 26642 33.88 30.00 31.47 -1.47 Before
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Insertion 26640 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Deletion 26640 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Substitution 26585 38.74 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Insertion 26581 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Deletion 26581 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Substitution 26605 34.43 30.00 31.56 -1.56 Before
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Insertion 26601 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Deletion 26601 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Substitution 26465 31.02 31.00 31.37 -0.37 Before
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Insertion 26461 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Deletion 26461 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Substitution 26485 37.99 30.00 31.70 -1.70 Before
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Insertion 26480 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Deletion 26480 1.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Substitution 26614 31.79 30.00 31.65 -1.65 Before
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Insertion 26609 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Deletion 26609 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Substitution 26518 40.13 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Insertion 26512 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Deletion 26512 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Substitution 26512 34.56 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Insertion 26503 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Deletion 26503 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Substitution 26529 35.09 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Insertion 26522 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Deletion 26522 2.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Substitution 26947 37.74 30.00 31.48 -1.48 Before
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Insertion 26947 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Deletion 26947 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Substitution 26549 34.88 30.00 31.55 -1.55 Before
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Insertion 26537 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Deletion 26537 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Substitution 26512 40.13 30.00 31.85 -1.85 Before
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Insertion 26495 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Deletion 26495 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Substitution 26504 30.93 31.00 31.41 -0.41 Before
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Insertion 26479 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Deletion 26479 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Substitution 26442 29.13 31.00 31.52 -0.52 Before
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Insertion 26413 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Deletion 26413 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Substitution 26384 36.12 30.00 31.57 -1.57 Before
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Insertion 26352 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Deletion 26352 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Substitution 26510 31.16 31.00 31.42 -0.42 Before
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Insertion 26475 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Deletion 26475 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Substitution 26471 40.47 30.00 31.32 -1.32 Before
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Insertion 26443 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Deletion 26443 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Substitution 26492 42.98 30.00 31.44 -1.44 Before
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Insertion 26444 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Deletion 26444 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Substitution 26421 33.18 30.00 31.84 -1.84 Before
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Insertion 26375 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Deletion 26375 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Substitution 26425 31.87 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Insertion 26382 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Deletion 26382 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Substitution 26946 34.67 30.00 31.34 -1.34 Before
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Insertion 26946 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Deletion 26946 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Substitution 26399 38.62 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Insertion 26344 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Deletion 26344 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Substitution 26426 30.22 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Insertion 26378 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Deletion 26378 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Substitution 26386 28.27 31.00 31.56 -0.56 Before
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Insertion 26328 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Deletion 26328 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Substitution 26330 40.86 30.00 31.28 -1.28 Before
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Insertion 26270 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Deletion 26270 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Substitution 26419 29.18 31.00 31.22 -0.22 Before
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Insertion 26358 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Deletion 26358 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Substitution 26435 35.58 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Insertion 26360 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Deletion 26360 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Substitution 26217 40.44 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Insertion 26140 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Deletion 26140 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Substitution 26269 39.64 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Insertion 26182 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Deletion 26182 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Substitution 26289 40.93 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Insertion 26187 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Deletion 26187 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Substitution 26148 36.99 30.00 31.19 -1.19 Before
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Insertion 26056 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Deletion 26056 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Substitution 26773 40.66 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Insertion 26773 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Deletion 26773 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Substitution 26241 30.18 31.00 31.39 -0.39 Before
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Insertion 26145 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Deletion 26145 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Substitution 26117 42.57 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Insertion 26015 0.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Deletion 26015 1.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Substitution 26093 35.64 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Insertion 25979 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Deletion 25979 2.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Substitution 26081 42.02 29.00 30.95 -1.95 Before
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Insertion 25967 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Deletion 25967 2.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Substitution 26043 37.14 30.00 31.25 -1.25 Before
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Insertion 25920 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Deletion 25920 2.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Substitution 26107 33.54 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Insertion 25965 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Deletion 25965 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Substitution 25949 37.21 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Insertion 25828 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Deletion 25828 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Substitution 25970 39.06 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Insertion 25841 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Deletion 25841 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Substitution 25877 19.86 31.00 30.84 0.16 Before
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Insertion 25746 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Deletion 25746 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Substitution 25715 30.59 30.00 30.98 -0.98 Before
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Insertion 25577 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Deletion 25577 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Substitution 26965 41.50 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Insertion 26965 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Deletion 26965 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Substitution 25780 48.50 29.00 30.71 -1.71 Before
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Insertion 25623 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Deletion 25623 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Substitution 25732 38.48 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Insertion 25581 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Deletion 25581 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Substitution 25707 36.30 30.00 30.95 -0.95 Before
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Insertion 25533 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Deletion 25533 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Substitution 25589 34.74 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Insertion 25415 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Deletion 25415 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Substitution 25599 40.35 29.00 30.97 -1.97 Before
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Insertion 25427 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Deletion 25427 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Substitution 25655 37.55 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Insertion 25472 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Deletion 25472 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Substitution 25626 40.67 29.00 30.66 -1.66 Before
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Insertion 25448 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Deletion 25448 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Substitution 25563 44.40 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Insertion 25385 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Deletion 25385 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Substitution 25605 32.08 30.00 30.85 -0.85 Before
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Insertion 25416 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Deletion 25416 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Substitution 25396 49.55 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Insertion 25192 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Deletion 25192 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Substitution 26917 34.83 30.00 31.03 -1.03 Before
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Insertion 26917 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Deletion 26917 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Substitution 25375 40.47 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Insertion 25148 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Deletion 25148 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Substitution 25240 32.39 30.00 30.84 -0.84 Before
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Insertion 24996 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Deletion 24996 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Substitution 25366 36.80 29.00 30.42 -1.42 Before
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Insertion 25126 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Deletion 25126 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Substitution 25288 40.10 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Insertion 25063 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Deletion 25063 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Substitution 25187 36.22 30.00 30.76 -0.76 Before
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Insertion 24966 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Deletion 24966 0.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Substitution 25111 39.30 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Insertion 24892 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Deletion 24892 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Substitution 25103 39.12 29.00 30.84 -1.84 Before
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Insertion 24879 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Deletion 24879 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Substitution 25010 49.92 29.00 30.68 -1.68 Before
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Insertion 24786 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Deletion 24786 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Substitution 25019 55.78 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Insertion 24795 0.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Deletion 24795 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Substitution 24892 32.12 30.00 30.80 -0.80 Before
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Insertion 24655 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Deletion 24655 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 12 QualityScore Base Substitution 80008 7808.93 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L007 24 QualityScore Base Substitution 196175 759.14 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L007 40 QualityScore Base Substitution 7301819 5331.19 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L007 45 QualityScore Base Insertion 7578002 133.89 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L007 45 QualityScore Base Deletion 7578002 341.03 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 AA Context Base Substitution 522554 1337.19 26.00 29.50 -3.50 Before
REGRESSION.HCC1395_tumor.L008 AAA Context Base Insertion 177130 21.32 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 AAA Context Base Deletion 177130 70.41 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L008 AAC Context Base Insertion 85144 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAC Context Base Deletion 85144 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAG Context Base Insertion 134076 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAG Context Base Deletion 134076 5.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAT Context Base Insertion 101492 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AAT Context Base Deletion 101492 2.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AC Context Base Substitution 356166 1194.43 25.00 28.67 -3.67 Before
REGRESSION.HCC1395_tumor.L008 ACA Context Base Insertion 131318 4.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACA Context Base Deletion 131318 6.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACC Context Base Insertion 104602 3.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACC Context Base Deletion 104602 2.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACG Context Base Insertion 20908 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACG Context Base Deletion 20908 1.83 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACT Context Base Insertion 104739 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ACT Context Base Deletion 104739 4.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AG Context Base Substitution 559616 558.24 30.00 31.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 AGA Context Base Insertion 151288 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGA Context Base Deletion 151288 6.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGC Context Base Insertion 139532 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGC Context Base Deletion 139532 4.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGG Context Base Insertion 162907 9.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGG Context Base Deletion 162907 4.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGT Context Base Insertion 102401 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AGT Context Base Deletion 102401 5.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 AT Context Base Substitution 369756 483.90 29.00 32.00 -3.00 Before
REGRESSION.HCC1395_tumor.L008 ATA Context Base Insertion 74612 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATA Context Base Deletion 74612 1.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATC Context Base Insertion 79091 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATC Context Base Deletion 79091 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATG Context Base Insertion 114937 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATG Context Base Deletion 114937 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATT Context Base Insertion 108842 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 ATT Context Base Deletion 108842 2.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CA Context Base Substitution 592406 1289.07 27.00 29.88 -2.88 Before
REGRESSION.HCC1395_tumor.L008 CAA Context Base Insertion 112270 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAA Context Base Deletion 112270 4.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAC Context Base Insertion 125187 7.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAC Context Base Deletion 125187 6.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAG Context Base Insertion 211667 4.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAG Context Base Deletion 211667 11.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAT Context Base Insertion 111403 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CAT Context Base Deletion 111403 3.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CC Context Base Substitution 553218 1742.21 25.00 28.89 -3.89 Before
REGRESSION.HCC1395_tumor.L008 CCA Context Base Insertion 176513 3.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCA Context Base Deletion 176513 2.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCC Context Base Insertion 152392 4.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCC Context Base Deletion 152392 9.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCG Context Base Insertion 37704 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCG Context Base Deletion 37704 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCT Context Base Insertion 178170 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CCT Context Base Deletion 178170 6.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CG Context Base Substitution 114657 337.93 26.00 29.80 -3.80 Before
REGRESSION.HCC1395_tumor.L008 CGA Context Base Insertion 44463 4.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGA Context Base Deletion 44463 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGC Context Base Insertion 63703 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGC Context Base Deletion 63703 2.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGG Context Base Insertion 76977 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGG Context Base Deletion 76977 2.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGT Context Base Insertion 49235 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CGT Context Base Deletion 49235 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CT Context Base Substitution 596260 444.74 31.00 32.36 -1.36 Before
REGRESSION.HCC1395_tumor.L008 CTA Context Base Insertion 58487 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTA Context Base Deletion 58487 3.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTC Context Base Insertion 146101 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTC Context Base Deletion 146101 8.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTG Context Base Insertion 213535 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTG Context Base Deletion 213535 5.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTT Context Base Insertion 146055 4.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 CTT Context Base Deletion 146055 5.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GA Context Base Substitution 494542 830.89 28.00 29.62 -1.62 Before
REGRESSION.HCC1395_tumor.L008 GAA Context Base Insertion 140859 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAA Context Base Deletion 140859 3.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAC Context Base Insertion 83590 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAC Context Base Deletion 83590 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAG Context Base Insertion 149551 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAG Context Base Deletion 149551 5.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAT Context Base Insertion 83481 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GAT Context Base Deletion 83481 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GC Context Base Substitution 487771 1124.73 27.00 30.25 -3.25 Before
REGRESSION.HCC1395_tumor.L008 GCA Context Base Insertion 147704 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCA Context Base Deletion 147704 5.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCC Context Base Insertion 147269 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCC Context Base Deletion 147269 5.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCG Context Base Insertion 36691 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCG Context Base Deletion 36691 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCT Context Base Insertion 155638 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GCT Context Base Deletion 155638 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GG Context Base Substitution 576604 732.25 29.00 31.67 -2.67 Before
REGRESSION.HCC1395_tumor.L008 GGA Context Base Insertion 156419 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGA Context Base Deletion 156419 5.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGC Context Base Insertion 145250 2.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGC Context Base Deletion 145250 5.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGG Context Base Insertion 158398 2.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGG Context Base Deletion 158398 11.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGT Context Base Insertion 115029 2.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GGT Context Base Deletion 115029 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GT Context Base Substitution 407923 700.34 28.00 32.00 -4.00 Before
REGRESSION.HCC1395_tumor.L008 GTA Context Base Insertion 65885 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTA Context Base Deletion 65885 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTC Context Base Insertion 91269 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTC Context Base Deletion 91269 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTG Context Base Insertion 139970 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTG Context Base Deletion 139970 9.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTT Context Base Insertion 99660 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 GTT Context Base Deletion 99660 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TA Context Base Substitution 288240 774.31 26.00 29.67 -3.67 Before
REGRESSION.HCC1395_tumor.L008 TAA Context Base Insertion 87817 3.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAA Context Base Deletion 87817 3.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAC Context Base Insertion 59964 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAC Context Base Deletion 59964 3.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAG Context Base Insertion 59815 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAG Context Base Deletion 59815 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAT Context Base Insertion 70647 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TAT Context Base Deletion 70647 1.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TC Context Base Substitution 448901 1045.66 27.00 30.44 -3.44 Before
REGRESSION.HCC1395_tumor.L008 TCA Context Base Insertion 132154 2.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCA Context Base Deletion 132154 6.79 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCC Context Base Insertion 145295 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCC Context Base Deletion 145295 4.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCG Context Base Insertion 18501 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCG Context Base Deletion 18501 0.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCT Context Base Insertion 153590 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TCT Context Base Deletion 153590 5.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TG Context Base Substitution 586280 434.98 31.00 31.68 -0.68 Before
REGRESSION.HCC1395_tumor.L008 TGA Context Base Insertion 138622 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGA Context Base Deletion 138622 2.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGC Context Base Insertion 136120 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGC Context Base Deletion 136120 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGG Context Base Insertion 174018 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGG Context Base Deletion 174018 3.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGT Context Base Insertion 138478 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TGT Context Base Deletion 138478 9.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TT Context Base Substitution 538152 731.19 29.00 32.75 -3.75 Before
REGRESSION.HCC1395_tumor.L008 TTA Context Base Insertion 87076 3.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTA Context Base Deletion 87076 3.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTC Context Base Insertion 129639 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTC Context Base Deletion 129639 6.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTG Context Base Insertion 113746 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTG Context Base Deletion 113746 2.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 TTT Context Base Insertion 179960 15.14 44.00 45.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 TTT Context Base Deletion 179960 56.24 42.00 45.00 -3.00 Before
REGRESSION.HCC1395_tumor.L008 -1 Cycle Base Substitution 26534 106.48 24.00 25.78 -1.78 Before
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Substitution 26879 41.59 30.00 31.58 -1.58 Before
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Insertion 26879 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Deletion 26879 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Substitution 24833 49.18 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Insertion 24615 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Deletion 24615 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Substitution 24876 55.71 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Insertion 24670 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Deletion 24670 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Substitution 24810 32.10 30.00 30.43 -0.43 Before
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Insertion 24593 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Deletion 24593 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Substitution 24671 55.41 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Insertion 24432 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Deletion 24432 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Substitution 24605 46.08 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Insertion 24340 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Deletion 24340 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Substitution 24638 53.95 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Insertion 24368 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Deletion 24368 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Substitution 24422 42.58 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Insertion 24167 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Deletion 24167 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Substitution 24447 35.48 29.00 30.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Insertion 24191 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Deletion 24191 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Substitution 24418 53.09 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Insertion 24165 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Deletion 24165 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Substitution 24484 53.73 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Insertion 24220 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Deletion 24220 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Substitution 26894 41.34 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Insertion 26894 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Deletion 26894 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Substitution 24318 43.11 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Insertion 24025 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Deletion 24025 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Substitution 24268 42.01 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Insertion 23966 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Deletion 23966 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Substitution 24250 53.01 29.00 30.31 -1.31 Before
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Insertion 23956 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Deletion 23956 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Substitution 24141 64.98 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Insertion 23837 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Deletion 23837 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Substitution 23962 39.98 29.00 29.62 -0.62 Before
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Insertion 23648 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Deletion 23648 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Substitution 23991 46.49 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Insertion 23668 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Deletion 23668 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Substitution 23923 39.61 29.00 29.81 -0.81 Before
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Insertion 23591 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Deletion 23591 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Substitution 23825 45.21 28.00 29.82 -1.82 Before
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Insertion 23503 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Deletion 23503 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Substitution 23772 49.01 28.00 29.74 -1.74 Before
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Insertion 23460 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Deletion 23460 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Substitution 23738 56.60 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Insertion 23415 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Deletion 23415 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Substitution 26860 31.18 31.00 31.47 -0.47 Before
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Insertion 26860 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Deletion 26860 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Substitution 23684 57.70 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Insertion 23378 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Deletion 23378 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Substitution 23473 42.37 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Insertion 23166 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Deletion 23166 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Substitution 23510 43.27 29.00 30.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Insertion 23202 0.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Deletion 23202 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Substitution 23447 44.79 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Insertion 23138 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Deletion 23138 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Substitution 23339 45.87 28.00 29.71 -1.71 Before
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Insertion 23042 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Deletion 23042 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Substitution 23370 48.20 28.00 29.58 -1.58 Before
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Insertion 23061 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Deletion 23061 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Substitution 23231 51.75 28.00 29.50 -1.50 Before
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Insertion 22905 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Deletion 22905 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Substitution 23204 59.57 28.00 29.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Insertion 22900 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Deletion 22900 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Substitution 23012 48.30 28.00 29.90 -1.90 Before
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Insertion 22707 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Deletion 22707 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Substitution 22918 45.82 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Insertion 22595 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Deletion 22595 1.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Substitution 26816 41.77 30.00 31.73 -1.73 Before
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Insertion 26816 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Deletion 26816 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Substitution 22986 49.01 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Insertion 22666 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Deletion 22666 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Substitution 22858 39.34 29.00 29.77 -0.77 Before
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Insertion 22538 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Deletion 22538 1.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Substitution 22828 48.75 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Insertion 22509 0.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Deletion 22509 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Substitution 22736 43.05 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Insertion 22422 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Deletion 22422 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Substitution 22655 49.36 28.00 30.00 -2.00 Before
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Insertion 22314 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Deletion 22314 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Substitution 22602 41.93 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Insertion 22259 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Deletion 22259 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Substitution 22425 43.71 28.00 29.43 -1.43 Before
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Insertion 22079 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Deletion 22079 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Substitution 22416 47.30 28.00 29.69 -1.69 Before
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Insertion 22059 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Deletion 22059 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Substitution 22343 39.36 29.00 29.89 -0.89 Before
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Insertion 22004 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Deletion 22004 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Substitution 22251 49.87 28.00 29.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Insertion 21930 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Deletion 21930 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Substitution 26752 44.88 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Insertion 26752 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Deletion 26752 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Substitution 22127 37.40 29.00 29.54 -0.54 Before
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Insertion 21746 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Deletion 21746 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Substitution 22130 36.80 29.00 29.70 -0.70 Before
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Insertion 21743 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Deletion 21743 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Substitution 21981 38.73 28.00 29.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Insertion 21540 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Deletion 21540 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Substitution 21899 39.71 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Insertion 21428 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Deletion 21428 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Substitution 21809 35.48 29.00 29.59 -0.59 Before
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Insertion 21314 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Deletion 21314 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Substitution 21735 44.46 28.00 29.75 -1.75 Before
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Insertion 16588 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Deletion 16588 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Substitution 21556 73.43 28.00 30.25 -2.25 Before
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Insertion 16518 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Deletion 16518 0.57 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -147 Cycle Base Substitution 21450 240.44 23.00 30.01 -7.01 Before
REGRESSION.HCC1395_tumor.L008 -148 Cycle Base Substitution 21357 852.28 15.00 30.26 -15.26 Before
REGRESSION.HCC1395_tumor.L008 -149 Cycle Base Substitution 13232 779.06 14.00 30.53 -16.53 Before
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Substitution 27006 26.76 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Insertion 27006 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Deletion 27006 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -150 Cycle Base Substitution 4705 5.84 30.00 30.59 -0.59 Before
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Substitution 26935 41.24 30.00 31.68 -1.68 Before
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Insertion 26935 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Deletion 26935 1.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Substitution 26778 47.46 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Insertion 26778 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Deletion 26778 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Substitution 26817 37.55 30.00 31.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Insertion 26817 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Deletion 26817 1.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Substitution 26807 45.30 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Insertion 26807 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Deletion 26807 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -2 Cycle Base Substitution 27099 70.23 27.00 28.43 -1.43 Before
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Substitution 26812 33.06 30.00 31.83 -1.83 Before
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Insertion 26812 0.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Deletion 26812 2.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Substitution 26664 28.63 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Insertion 26664 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Deletion 26664 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Substitution 26809 43.57 30.00 31.93 -1.93 Before
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Insertion 26809 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Deletion 26809 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Substitution 26794 47.42 30.00 31.54 -1.54 Before
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Insertion 26794 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Deletion 26794 0.94 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Substitution 26743 34.40 30.00 31.50 -1.50 Before
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Insertion 26743 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Deletion 26743 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Substitution 26715 41.50 31.00 32.01 -1.01 Before
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Insertion 26715 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Deletion 26715 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Substitution 26708 45.82 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Insertion 26708 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Deletion 26708 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Substitution 26718 39.13 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Insertion 26718 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Deletion 26718 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Substitution 26571 32.48 30.00 30.08 -0.08 Before
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Insertion 26571 1.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Deletion 26571 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Substitution 26756 35.58 30.00 30.01 -0.01 Before
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Insertion 26755 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Deletion 26755 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -3 Cycle Base Substitution 27018 65.91 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Substitution 26732 42.74 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Insertion 26731 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Deletion 26731 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Substitution 26676 51.39 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Insertion 26674 0.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Deletion 26674 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Substitution 26614 30.23 30.00 30.13 -0.13 Before
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Insertion 26612 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Deletion 26612 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Substitution 26665 42.41 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Insertion 26664 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Deletion 26664 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Substitution 26652 31.70 30.00 30.42 -0.42 Before
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Insertion 26649 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Deletion 26649 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Substitution 26635 39.41 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Insertion 26634 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Deletion 26634 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Substitution 26752 43.59 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Insertion 26751 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Deletion 26751 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Substitution 26591 31.44 30.00 30.15 -0.15 Before
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Insertion 26590 0.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Deletion 26590 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Substitution 26557 38.01 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Insertion 26556 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Deletion 26556 1.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Substitution 26564 36.98 30.00 30.73 -0.73 Before
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Insertion 26563 0.39 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Deletion 26563 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -4 Cycle Base Substitution 26951 76.52 27.00 29.80 -2.80 Before
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Substitution 26524 33.31 30.00 30.77 -0.77 Before
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Insertion 26523 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Deletion 26523 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Substitution 26624 40.68 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Insertion 26623 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Deletion 26623 1.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Substitution 26514 33.89 30.00 30.62 -0.62 Before
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Insertion 26514 0.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Deletion 26514 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Substitution 26577 41.53 29.00 30.22 -1.22 Before
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Insertion 26577 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Deletion 26577 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Substitution 26631 48.91 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Insertion 26627 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Deletion 26627 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Substitution 26533 35.65 30.00 30.34 -0.34 Before
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Insertion 26525 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Deletion 26525 1.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Substitution 26537 36.24 30.00 30.39 -0.39 Before
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Insertion 26527 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Deletion 26527 1.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Substitution 26434 34.23 30.00 30.57 -0.57 Before
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Insertion 26424 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Deletion 26424 1.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Substitution 26532 40.76 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Insertion 26524 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Deletion 26524 1.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Substitution 26523 43.22 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Insertion 26515 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Deletion 26515 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Substitution 26952 46.48 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Insertion 26952 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Deletion 26952 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Substitution 26554 38.45 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Insertion 26542 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Deletion 26542 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Substitution 26441 32.18 30.00 30.46 -0.46 Before
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Insertion 26425 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Deletion 26425 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Substitution 26535 39.48 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Insertion 26510 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Deletion 26510 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Substitution 26499 48.30 29.00 30.65 -1.65 Before
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Insertion 26474 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Deletion 26474 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Substitution 26443 36.61 30.00 30.59 -0.59 Before
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Insertion 26412 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Deletion 26412 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Substitution 26366 52.15 29.00 30.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Insertion 26336 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Deletion 26336 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Substitution 26454 42.83 29.00 30.35 -1.35 Before
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Insertion 26421 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Deletion 26421 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Substitution 26280 32.76 30.00 30.68 -0.68 Before
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Insertion 26243 1.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Deletion 26243 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Substitution 26365 43.84 29.00 30.90 -1.90 Before
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Insertion 26322 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Deletion 26322 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Substitution 26430 42.16 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Insertion 26391 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Deletion 26391 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Substitution 26964 58.11 29.00 30.96 -1.96 Before
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Insertion 26964 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Deletion 26964 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Substitution 26438 49.50 29.00 30.88 -1.88 Before
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Insertion 26393 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Deletion 26393 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Substitution 26381 37.62 29.00 30.60 -1.60 Before
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Insertion 26330 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Deletion 26330 2.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Substitution 26467 42.16 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Insertion 26413 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Deletion 26413 2.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Substitution 26337 55.99 29.00 30.79 -1.79 Before
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Insertion 26266 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Deletion 26266 2.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Substitution 26254 39.22 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Insertion 26183 0.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Deletion 26183 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Substitution 26220 41.86 29.00 30.51 -1.51 Before
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Insertion 26138 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Deletion 26138 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Substitution 26210 28.63 30.00 30.51 -0.51 Before
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Insertion 26121 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Deletion 26121 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Substitution 26215 32.36 30.00 30.78 -0.78 Before
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Insertion 26126 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Deletion 26126 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Substitution 26276 44.96 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Insertion 26183 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Deletion 26183 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Substitution 26238 38.64 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Insertion 26153 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Deletion 26153 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Substitution 26879 41.31 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Insertion 26879 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Deletion 26879 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Substitution 26234 36.63 30.00 30.64 -0.64 Before
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Insertion 26150 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Deletion 26150 2.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Substitution 25999 35.90 30.00 30.38 -0.38 Before
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Insertion 25904 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Deletion 25904 1.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Substitution 25987 40.83 29.00 30.64 -1.64 Before
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Insertion 25886 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Deletion 25886 2.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Substitution 26154 41.69 29.00 30.67 -1.67 Before
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Insertion 26034 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Deletion 26034 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Substitution 26046 31.83 30.00 30.60 -0.60 Before
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Insertion 25928 0.21 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Deletion 25928 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Substitution 25927 39.85 29.00 30.69 -1.69 Before
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Insertion 25799 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Deletion 25799 1.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Substitution 25923 34.93 30.00 30.44 -0.44 Before
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Insertion 25777 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Deletion 25777 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Substitution 25842 39.44 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Insertion 25703 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Deletion 25703 1.72 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Substitution 25896 44.75 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Insertion 25754 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Deletion 25754 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Substitution 25814 46.23 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Insertion 25658 0.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Deletion 25658 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Substitution 26920 44.93 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Insertion 26920 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Deletion 26920 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Substitution 25769 43.24 30.00 31.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Insertion 25609 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Deletion 25609 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Substitution 25804 39.91 29.00 30.45 -1.45 Before
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Insertion 25635 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Deletion 25635 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Substitution 25714 44.99 29.00 30.46 -1.46 Before
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Insertion 25550 0.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Deletion 25550 1.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Substitution 25713 49.81 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Insertion 25540 0.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Deletion 25540 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Substitution 25593 40.86 29.00 30.44 -1.44 Before
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Insertion 25417 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Deletion 25417 1.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Substitution 25548 46.73 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Insertion 25393 0.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Deletion 25393 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Substitution 25585 39.00 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Insertion 25407 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Deletion 25407 1.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Substitution 25486 50.82 29.00 30.14 -1.14 Before
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Insertion 25319 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Deletion 25319 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Substitution 25506 45.47 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Insertion 25333 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Deletion 25333 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Substitution 25442 49.53 29.00 30.20 -1.20 Before
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Insertion 25262 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Deletion 25262 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Substitution 26978 50.49 30.00 31.09 -1.09 Before
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Insertion 26978 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Deletion 26978 1.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Substitution 25461 39.19 29.00 30.49 -1.49 Before
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Insertion 25279 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Deletion 25279 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Substitution 25459 46.42 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Insertion 25271 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Deletion 25271 0.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Substitution 25310 50.17 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Insertion 25110 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Deletion 25110 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Substitution 25236 55.09 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Insertion 25009 0.09 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Deletion 25009 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Substitution 25111 34.68 30.00 30.47 -0.47 Before
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Insertion 24883 0.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Deletion 24883 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Substitution 25218 38.08 29.00 29.98 -0.98 Before
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Insertion 24975 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Deletion 24975 1.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Substitution 25114 55.88 29.00 30.34 -1.34 Before
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Insertion 24871 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Deletion 24871 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Substitution 25091 47.89 29.00 30.30 -1.30 Before
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Insertion 24849 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Deletion 24849 0.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Substitution 24889 49.90 29.00 30.09 -1.09 Before
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Insertion 24661 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Deletion 24661 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Substitution 24952 45.54 29.00 30.41 -1.41 Before
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Insertion 24735 0.82 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Deletion 24735 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 1 Cycle Base Substitution 26600 54.76 28.00 28.47 -0.47 Before
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Substitution 26845 31.80 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Insertion 26845 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Deletion 26845 1.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Substitution 24723 52.25 29.00 30.13 -1.13 Before
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Insertion 24507 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Deletion 24507 1.96 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Substitution 24737 26.19 30.00 30.49 -0.49 Before
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Insertion 24533 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Deletion 24533 1.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Substitution 24685 29.19 30.00 30.66 -0.66 Before
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Insertion 24464 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Deletion 24464 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Substitution 24607 41.21 29.00 30.37 -1.37 Before
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Insertion 24359 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Deletion 24359 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Substitution 24586 33.79 30.00 30.37 -0.37 Before
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Insertion 24337 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Deletion 24337 1.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Substitution 24523 38.33 29.00 30.54 -1.54 Before
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Insertion 24260 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Deletion 24260 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Substitution 24537 40.93 29.00 30.78 -1.78 Before
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Insertion 24290 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Deletion 24290 1.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Substitution 24365 41.41 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Insertion 24120 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Deletion 24120 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Substitution 24270 51.51 29.00 30.56 -1.56 Before
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Insertion 24029 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Deletion 24029 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Substitution 24287 31.13 30.00 30.81 -0.81 Before
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Insertion 24032 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Deletion 24032 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Substitution 26874 32.81 30.00 30.87 -0.87 Before
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Insertion 26874 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Deletion 26874 1.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Substitution 24302 47.60 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Insertion 24019 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Deletion 24019 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Substitution 24308 40.94 29.00 30.12 -1.12 Before
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Insertion 24001 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Deletion 24001 1.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Substitution 24143 48.26 29.00 30.39 -1.39 Before
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Insertion 23831 0.11 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Deletion 23831 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Substitution 24236 43.68 29.00 30.18 -1.18 Before
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Insertion 23923 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Deletion 23923 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Substitution 24052 32.97 30.00 30.30 -0.30 Before
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Insertion 23740 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Deletion 23740 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Substitution 23924 41.11 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Insertion 23598 0.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Deletion 23598 1.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Substitution 23875 40.08 29.00 30.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Insertion 23540 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Deletion 23540 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Substitution 23740 47.32 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Insertion 23409 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Deletion 23409 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Substitution 23602 35.72 29.00 30.19 -1.19 Before
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Insertion 23306 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Deletion 23306 0.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Substitution 23721 48.50 29.00 30.21 -1.21 Before
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Insertion 23419 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Deletion 23419 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Substitution 26865 35.82 30.00 31.46 -1.46 Before
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Insertion 26865 0.86 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Deletion 26865 1.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Substitution 23594 42.26 29.00 30.23 -1.23 Before
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Insertion 23305 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Deletion 23305 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Substitution 23648 55.48 29.00 30.15 -1.15 Before
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Insertion 23331 0.23 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Deletion 23331 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Substitution 23334 44.90 28.00 29.80 -1.80 Before
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Insertion 23017 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Deletion 23017 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Substitution 23322 49.78 29.00 30.04 -1.04 Before
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Insertion 23014 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Deletion 23014 0.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Substitution 23310 55.41 28.00 29.94 -1.94 Before
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Insertion 23008 0.25 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Deletion 23008 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Substitution 23309 37.20 29.00 29.93 -0.93 Before
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Insertion 23007 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Deletion 23007 0.95 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Substitution 23246 49.57 28.00 29.91 -1.91 Before
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Insertion 22951 0.40 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Deletion 22951 1.07 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Substitution 23125 37.81 29.00 30.28 -1.28 Before
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Insertion 22839 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Deletion 22839 0.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Substitution 23016 49.44 28.00 29.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Insertion 22722 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Deletion 22722 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Substitution 22988 38.86 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Insertion 22688 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Deletion 22688 1.85 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Substitution 26777 36.53 30.00 30.98 -0.98 Before
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Insertion 26777 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Deletion 26777 2.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Substitution 22910 40.36 29.00 30.16 -1.16 Before
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Insertion 22599 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Deletion 22599 2.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Substitution 22945 52.00 29.00 30.05 -1.05 Before
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Insertion 22638 0.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Deletion 22638 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Substitution 22847 50.66 28.00 29.67 -1.67 Before
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Insertion 22525 0.34 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Deletion 22525 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Substitution 22643 54.43 29.00 30.02 -1.02 Before
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Insertion 22340 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Deletion 22340 1.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Substitution 22540 41.92 28.00 29.96 -1.96 Before
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Insertion 22220 0.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Deletion 22220 0.70 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Substitution 22487 45.74 28.00 29.61 -1.61 Before
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Insertion 22138 1.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Deletion 22138 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Substitution 22398 46.96 29.00 30.24 -1.24 Before
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Insertion 22075 1.06 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Deletion 22075 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Substitution 22403 43.49 28.00 29.73 -1.73 Before
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Insertion 22074 0.31 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Deletion 22074 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Substitution 22294 40.87 28.00 29.98 -1.98 Before
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Insertion 21986 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Deletion 21986 0.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Substitution 22251 47.75 28.00 29.92 -1.92 Before
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Insertion 21937 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Deletion 21937 0.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Substitution 26727 22.60 31.00 31.25 -0.25 Before
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Insertion 26727 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Deletion 26727 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Substitution 22135 37.58 29.00 29.66 -0.66 Before
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Insertion 21807 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Deletion 21807 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Substitution 22172 40.15 28.00 29.95 -1.95 Before
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Insertion 21835 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Deletion 21835 0.89 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Substitution 22101 47.77 28.00 29.77 -1.77 Before
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Insertion 21750 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Deletion 21750 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Substitution 21976 46.52 28.00 29.32 -1.32 Before
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Insertion 21625 0.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Deletion 21625 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Substitution 21883 45.68 29.00 30.06 -1.06 Before
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Insertion 21515 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Deletion 21515 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Substitution 21843 41.81 28.00 29.78 -1.78 Before
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Insertion 21456 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Deletion 21456 0.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Substitution 21837 38.33 29.00 29.95 -0.95 Before
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Insertion 21468 0.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Deletion 21468 0.20 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 147 Cycle Base Substitution 21602 53.33 28.00 29.81 -1.81 Before
REGRESSION.HCC1395_tumor.L008 148 Cycle Base Substitution 21477 53.30 28.00 29.76 -1.76 Before
REGRESSION.HCC1395_tumor.L008 149 Cycle Base Substitution 21424 47.65 28.00 29.59 -1.59 Before
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Substitution 26782 34.28 30.00 31.49 -1.49 Before
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Insertion 26782 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Deletion 26782 1.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 150 Cycle Base Substitution 21366 42.19 28.00 29.93 -1.93 Before
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Substitution 26704 24.67 32.00 33.01 -1.01 Before
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Insertion 26704 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Deletion 26704 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Substitution 26689 27.32 31.00 32.73 -1.73 Before
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Insertion 26689 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Deletion 26689 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Substitution 26741 18.35 32.00 32.52 -0.52 Before
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Insertion 26741 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Deletion 26741 2.02 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Substitution 26747 23.04 32.00 32.92 -0.92 Before
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Insertion 26747 1.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Deletion 26747 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 2 Cycle Base Substitution 26963 45.12 29.00 30.32 -1.32 Before
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Substitution 26692 24.57 32.00 32.85 -0.85 Before
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Insertion 26692 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Deletion 26692 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Substitution 26616 25.59 32.00 32.67 -0.67 Before
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Insertion 26616 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Deletion 26616 1.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Substitution 26806 16.61 33.00 33.00 -0.00 Before
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Insertion 26806 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Deletion 26806 1.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Substitution 26621 21.25 32.00 32.73 -0.73 Before
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Insertion 26621 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Deletion 26621 1.67 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Substitution 26664 22.20 33.00 33.24 -0.24 Before
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Insertion 26664 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Deletion 26664 2.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Substitution 26671 24.66 32.00 32.57 -0.57 Before
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Insertion 26671 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Deletion 26671 1.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Substitution 26579 34.05 30.00 31.51 -1.51 Before
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Insertion 26579 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Deletion 26579 1.74 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Substitution 26682 30.75 31.00 31.17 -0.17 Before
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Insertion 26682 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Deletion 26682 1.98 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Substitution 26709 25.16 31.00 31.38 -0.38 Before
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Insertion 26709 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Deletion 26709 1.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Substitution 26655 26.20 31.00 31.37 -0.37 Before
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Insertion 26654 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Deletion 26654 1.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 3 Cycle Base Substitution 26979 53.76 30.00 31.20 -1.20 Before
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Substitution 26659 32.18 30.00 31.56 -1.56 Before
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Insertion 26658 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Deletion 26658 2.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Substitution 26526 27.82 31.00 31.65 -0.65 Before
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Insertion 26524 0.71 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Deletion 26524 2.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Substitution 26616 35.41 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Insertion 26613 0.97 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Deletion 26613 2.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Substitution 26608 28.09 31.00 31.12 -0.12 Before
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Insertion 26607 0.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Deletion 26607 2.03 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Substitution 26565 32.32 30.00 31.10 -1.10 Before
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Insertion 26562 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Deletion 26562 1.66 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Substitution 26619 27.81 31.00 31.52 -0.52 Before
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Insertion 26617 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Deletion 26617 1.91 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Substitution 26537 33.66 30.00 31.37 -1.37 Before
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Insertion 26537 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Deletion 26537 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Substitution 26522 31.38 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Insertion 26522 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Deletion 26522 1.12 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Substitution 26528 32.01 30.00 31.66 -1.66 Before
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Insertion 26526 0.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Deletion 26526 0.90 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Substitution 26543 38.39 30.00 31.41 -1.41 Before
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Insertion 26542 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Deletion 26542 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 4 Cycle Base Substitution 27038 61.90 29.00 31.13 -2.13 Before
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Substitution 26555 32.24 30.00 31.63 -1.63 Before
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Insertion 26554 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Deletion 26554 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Substitution 26571 30.75 31.00 31.54 -0.54 Before
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Insertion 26569 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Deletion 26569 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Substitution 26519 37.54 30.00 31.23 -1.23 Before
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Insertion 26519 0.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Deletion 26519 2.00 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Substitution 26546 22.35 31.00 31.59 -0.59 Before
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Insertion 26546 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Deletion 26546 1.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Substitution 26532 34.15 30.00 31.12 -1.12 Before
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Insertion 26529 0.45 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Deletion 26529 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Substitution 26445 33.38 30.00 31.69 -1.69 Before
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Insertion 26439 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Deletion 26439 1.33 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Substitution 26416 23.24 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Insertion 26406 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Deletion 26406 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Substitution 26416 31.04 31.00 31.51 -0.51 Before
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Insertion 26405 0.92 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Deletion 26405 1.10 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Substitution 26471 33.64 30.00 31.35 -1.35 Before
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Insertion 26465 0.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Deletion 26465 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Substitution 26466 39.67 29.00 30.97 -1.97 Before
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Insertion 26457 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Deletion 26457 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Substitution 26968 38.74 30.00 31.53 -1.53 Before
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Insertion 26968 0.37 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Deletion 26968 0.50 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Substitution 26440 29.13 31.00 31.58 -0.58 Before
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Insertion 26427 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Deletion 26427 1.01 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Substitution 26341 35.90 30.00 31.43 -1.43 Before
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Insertion 26322 0.73 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Deletion 26322 1.48 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Substitution 26393 30.39 31.00 31.72 -0.72 Before
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Insertion 26370 0.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Deletion 26370 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Substitution 26381 27.76 31.00 31.46 -0.46 Before
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Insertion 26361 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Deletion 26361 1.49 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Substitution 26334 38.26 29.00 30.80 -1.80 Before
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Insertion 26312 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Deletion 26312 1.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Substitution 26302 24.21 31.00 31.64 -0.64 Before
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Insertion 26272 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Deletion 26272 1.15 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Substitution 26472 26.84 31.00 31.49 -0.49 Before
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Insertion 26436 0.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Deletion 26436 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Substitution 26305 31.03 31.00 31.06 -0.06 Before
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Insertion 26270 0.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Deletion 26270 1.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Substitution 26367 31.07 31.00 31.40 -0.40 Before
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Insertion 26325 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Deletion 26325 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Substitution 26393 31.41 31.00 31.48 -0.48 Before
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Insertion 26357 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Deletion 26357 1.51 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Substitution 26905 35.16 30.00 31.30 -1.30 Before
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Insertion 26905 0.44 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Deletion 26905 0.54 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Substitution 26238 33.85 30.00 31.05 -1.05 Before
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Insertion 26198 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Deletion 26198 1.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Substitution 26288 34.15 30.00 31.38 -1.38 Before
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Insertion 26237 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Deletion 26237 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Substitution 26192 35.15 30.00 30.94 -0.94 Before
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Insertion 26137 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Deletion 26137 1.08 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Substitution 26175 38.69 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Insertion 26108 0.61 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Deletion 26108 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Substitution 26122 45.04 29.00 30.99 -1.99 Before
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Insertion 26044 0.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Deletion 26044 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Substitution 26172 33.68 30.00 31.33 -1.33 Before
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Insertion 26096 0.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Deletion 26096 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Substitution 26050 30.93 30.00 31.21 -1.21 Before
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Insertion 25964 0.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Deletion 25964 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Substitution 26079 36.40 30.00 31.08 -1.08 Before
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Insertion 25996 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Deletion 25996 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Substitution 26078 43.48 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Insertion 25992 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Deletion 25992 1.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Substitution 26132 31.83 30.00 31.18 -1.18 Before
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Insertion 26049 0.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Deletion 26049 1.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Substitution 26817 25.94 31.00 31.20 -0.20 Before
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Insertion 26817 0.46 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Deletion 26817 0.88 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Substitution 26051 29.66 31.00 31.25 -0.25 Before
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Insertion 25965 0.59 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Deletion 25965 1.69 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Substitution 26120 27.82 30.00 30.67 -0.67 Before
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Insertion 26016 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Deletion 26016 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Substitution 26045 34.67 30.00 31.27 -1.27 Before
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Insertion 25941 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Deletion 25941 1.35 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Substitution 26071 45.12 30.00 31.04 -1.04 Before
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Insertion 25960 0.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Deletion 25960 1.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Substitution 25877 42.11 29.00 30.76 -1.76 Before
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Insertion 25762 0.87 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Deletion 25762 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Substitution 25940 41.89 30.00 31.29 -1.29 Before
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Insertion 25820 1.22 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Deletion 25820 1.16 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Substitution 25881 38.95 29.00 30.81 -1.81 Before
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Insertion 25743 1.26 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Deletion 25743 0.68 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Substitution 25885 46.11 29.00 30.98 -1.98 Before
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Insertion 25751 0.84 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Deletion 25751 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Substitution 25830 34.64 30.00 31.00 -1.00 Before
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Insertion 25691 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Deletion 25691 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Substitution 25754 41.02 30.00 31.06 -1.06 Before
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Insertion 25600 0.76 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Deletion 25600 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Substitution 26785 34.17 30.00 31.07 -1.07 Before
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Insertion 26785 0.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Deletion 26785 1.19 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Substitution 25683 40.51 29.00 30.55 -1.55 Before
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Insertion 25531 0.75 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Deletion 25531 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Substitution 25669 35.09 30.00 30.54 -0.54 Before
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Insertion 25481 0.62 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Deletion 25481 0.99 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Substitution 25657 44.97 29.00 30.61 -1.61 Before
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Insertion 25486 0.80 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Deletion 25486 1.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Substitution 25559 32.59 30.00 30.98 -0.98 Before
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Insertion 25399 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Deletion 25399 1.24 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Substitution 25494 40.99 29.00 30.87 -1.87 Before
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Insertion 25328 0.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Deletion 25328 1.58 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Substitution 25537 39.10 29.00 30.75 -1.75 Before
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Insertion 25379 0.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Deletion 25379 1.30 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Substitution 25423 42.29 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Insertion 25238 0.42 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Deletion 25238 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Substitution 25417 25.72 30.00 30.77 -0.77 Before
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Insertion 25242 0.78 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Deletion 25242 1.65 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Substitution 25291 45.66 29.00 30.40 -1.40 Before
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Insertion 25111 0.81 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Deletion 25111 1.93 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Substitution 25262 34.74 30.00 30.71 -0.71 Before
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Insertion 25089 1.04 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Deletion 25089 1.63 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Substitution 26840 33.47 30.00 31.24 -1.24 Before
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Insertion 26840 0.47 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Deletion 26840 1.60 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Substitution 25305 32.26 30.00 30.96 -0.96 Before
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Insertion 25118 0.29 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Deletion 25118 1.32 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Substitution 25385 43.72 29.00 30.63 -1.63 Before
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Insertion 25199 0.17 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Deletion 25199 1.38 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Substitution 25199 47.75 29.00 30.48 -1.48 Before
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Insertion 25012 0.14 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Deletion 25012 1.18 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Substitution 25193 35.49 30.00 30.78 -0.78 Before
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Insertion 24982 0.13 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Deletion 24982 1.28 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Substitution 25067 33.19 30.00 30.46 -0.46 Before
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Insertion 24845 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Deletion 24845 1.56 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Substitution 25144 27.48 30.00 30.45 -0.45 Before
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Insertion 24903 0.77 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Deletion 24903 1.53 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Substitution 25069 40.38 29.00 30.74 -1.74 Before
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Insertion 24832 0.55 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Deletion 24832 1.52 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Substitution 24930 39.84 29.00 30.72 -1.72 Before
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Insertion 24687 0.36 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Deletion 24687 1.05 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Substitution 24950 42.39 29.00 30.52 -1.52 Before
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Insertion 24721 0.41 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Deletion 24721 1.27 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Substitution 24713 35.96 29.00 30.82 -1.82 Before
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Insertion 24497 0.64 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Deletion 24497 1.43 45.00 45.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 12 QualityScore Base Substitution 81206 7793.84 10.00 12.00 -2.00 Before
REGRESSION.HCC1395_tumor.L008 24 QualityScore Base Substitution 195517 783.61 24.00 24.00 0.00 Before
REGRESSION.HCC1395_tumor.L008 40 QualityScore Base Substitution 7269465 5346.35 31.00 40.00 -9.00 Before
REGRESSION.HCC1395_tumor.L008 45 QualityScore Base Insertion 7546188 138.61 47.00 45.00 2.00 Before
REGRESSION.HCC1395_tumor.L008 45 QualityScore Base Deletion 7546188 374.21 43.00 45.00 -2.00 Before
REGRESSION.HCC1395_tumor.L001 AA Context Base Substitution 838217 1860.20 27.00 25.56 1.44 After
REGRESSION.HCC1395_tumor.L001 AAA Context Base Insertion 297407 79.46 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L001 AAA Context Base Deletion 297407 194.04 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L001 AAC Context Base Insertion 132989 5.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAC Context Base Deletion 132989 9.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAG Context Base Insertion 199491 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAG Context Base Deletion 199491 10.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAT Context Base Insertion 174217 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AAT Context Base Deletion 174217 13.99 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 AC Context Base Substitution 533796 1895.94 25.00 24.74 0.26 After
REGRESSION.HCC1395_tumor.L001 ACA Context Base Insertion 206308 21.28 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 ACA Context Base Deletion 206308 32.55 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 ACC Context Base Insertion 146935 7.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACC Context Base Deletion 146935 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACG Context Base Insertion 30708 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACG Context Base Deletion 30708 2.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACT Context Base Insertion 158447 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ACT Context Base Deletion 158447 10.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AG Context Base Substitution 803328 615.20 31.00 28.73 2.27 After
REGRESSION.HCC1395_tumor.L001 AGA Context Base Insertion 222590 6.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGA Context Base Deletion 222590 10.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGC Context Base Insertion 193550 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGC Context Base Deletion 193550 5.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGG Context Base Insertion 228096 9.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGG Context Base Deletion 228096 6.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGT Context Base Insertion 155664 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AGT Context Base Deletion 155664 7.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 AT Context Base Substitution 604222 618.22 30.00 27.65 2.35 After
REGRESSION.HCC1395_tumor.L001 ATA Context Base Insertion 135001 9.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATA Context Base Deletion 135001 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATC Context Base Insertion 121192 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATC Context Base Deletion 121192 6.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATG Context Base Insertion 175629 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATG Context Base Deletion 175629 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATT Context Base Insertion 183290 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 ATT Context Base Deletion 183290 8.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CA Context Base Substitution 861161 1755.72 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L001 CAA Context Base Insertion 172470 7.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAA Context Base Deletion 172470 11.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAC Context Base Insertion 184712 21.63 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 CAC Context Base Deletion 184712 31.28 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 CAG Context Base Insertion 293376 8.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAG Context Base Deletion 293376 10.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAT Context Base Insertion 171267 7.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CAT Context Base Deletion 171267 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CC Context Base Substitution 766432 2435.14 25.00 24.65 0.35 After
REGRESSION.HCC1395_tumor.L001 CCA Context Base Insertion 246410 6.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCA Context Base Deletion 246410 6.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCC Context Base Insertion 212774 11.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCC Context Base Deletion 212774 15.63 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 CCG Context Base Insertion 53455 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCG Context Base Deletion 53455 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCT Context Base Insertion 243729 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CCT Context Base Deletion 243729 9.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CG Context Base Substitution 160000 558.98 25.00 24.97 0.03 After
REGRESSION.HCC1395_tumor.L001 CGA Context Base Insertion 56330 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGA Context Base Deletion 56330 0.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGC Context Base Insertion 80598 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGC Context Base Deletion 80598 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGG Context Base Insertion 97282 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGG Context Base Deletion 97282 9.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGT Context Base Insertion 63503 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CGT Context Base Deletion 63503 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CT Context Base Substitution 842674 410.63 33.00 29.39 3.61 After
REGRESSION.HCC1395_tumor.L001 CTA Context Base Insertion 96879 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTA Context Base Deletion 96879 6.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTC Context Base Insertion 201933 7.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTC Context Base Deletion 201933 20.79 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 CTG Context Base Insertion 294390 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTG Context Base Deletion 294390 10.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTT Context Base Insertion 211352 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 CTT Context Base Deletion 211352 8.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GA Context Base Substitution 704832 1006.19 28.00 26.98 1.02 After
REGRESSION.HCC1395_tumor.L001 GAA Context Base Insertion 210985 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAA Context Base Deletion 210985 8.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAC Context Base Insertion 118606 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAC Context Base Deletion 118606 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAG Context Base Insertion 207073 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAG Context Base Deletion 207073 10.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAT Context Base Insertion 125233 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GAT Context Base Deletion 125233 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GC Context Base Substitution 665050 1440.18 27.00 26.08 0.92 After
REGRESSION.HCC1395_tumor.L001 GCA Context Base Insertion 205669 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCA Context Base Deletion 205669 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCC Context Base Insertion 199638 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCC Context Base Deletion 199638 8.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCG Context Base Insertion 48642 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCG Context Base Deletion 48642 6.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCT Context Base Insertion 210833 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GCT Context Base Deletion 210833 5.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GG Context Base Substitution 791836 736.10 30.00 27.75 2.25 After
REGRESSION.HCC1395_tumor.L001 GGA Context Base Insertion 215123 14.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGA Context Base Deletion 215123 14.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGC Context Base Insertion 196555 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGC Context Base Deletion 196555 8.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGG Context Base Insertion 218617 7.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGG Context Base Deletion 218617 30.94 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 GGT Context Base Insertion 159064 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GGT Context Base Deletion 159064 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GT Context Base Substitution 595094 1024.37 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L001 GTA Context Base Insertion 102396 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTA Context Base Deletion 102396 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTC Context Base Insertion 128006 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTC Context Base Deletion 128006 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTG Context Base Insertion 201379 14.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTG Context Base Deletion 201379 37.57 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L001 GTT Context Base Insertion 149938 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 GTT Context Base Deletion 149938 12.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TA Context Base Substitution 485975 1148.45 26.00 25.09 0.91 After
REGRESSION.HCC1395_tumor.L001 TAA Context Base Insertion 150097 10.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAA Context Base Deletion 150097 13.89 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 TAC Context Base Insertion 94065 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAC Context Base Deletion 94065 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAG Context Base Insertion 97005 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAG Context Base Deletion 97005 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAT Context Base Insertion 129179 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TAT Context Base Deletion 129179 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TC Context Base Substitution 650031 1667.30 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L001 TCA Context Base Insertion 196038 5.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCA Context Base Deletion 196038 12.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCC Context Base Insertion 202198 30.51 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 TCC Context Base Deletion 202198 8.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCG Context Base Insertion 26018 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCG Context Base Deletion 26018 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCT Context Base Insertion 224000 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TCT Context Base Deletion 224000 13.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TG Context Base Substitution 849286 384.99 33.00 29.43 3.57 After
REGRESSION.HCC1395_tumor.L001 TGA Context Base Insertion 205333 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGA Context Base Deletion 205333 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGC Context Base Insertion 190109 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGC Context Base Deletion 190109 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGG Context Base Insertion 242007 4.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGG Context Base Deletion 242007 12.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGT Context Base Insertion 213095 14.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TGT Context Base Deletion 213095 38.43 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L001 TT Context Base Substitution 845408 944.33 29.00 28.24 0.76 After
REGRESSION.HCC1395_tumor.L001 TTA Context Base Insertion 148029 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTA Context Base Deletion 148029 10.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTC Context Base Insertion 195049 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTC Context Base Deletion 195049 10.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTG Context Base Insertion 171805 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTG Context Base Deletion 171805 8.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 TTT Context Base Insertion 295213 58.34 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L001 TTT Context Base Deletion 295213 160.68 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L001 -1 Cycle Base Substitution 38749 163.62 24.00 23.57 0.43 After
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Substitution 39073 57.68 28.00 27.99 0.01 After
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Insertion 39073 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -10 Cycle Base Deletion 39073 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Substitution 36684 81.26 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Insertion 36393 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -100 Cycle Base Deletion 36393 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Substitution 36589 93.30 26.00 26.63 -0.63 After
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Insertion 36285 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -101 Cycle Base Deletion 36285 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Substitution 36560 93.25 26.00 26.62 -0.62 After
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Insertion 36236 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -102 Cycle Base Deletion 36236 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Substitution 36325 89.91 26.00 26.49 -0.49 After
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Insertion 36000 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -103 Cycle Base Deletion 36000 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Substitution 36258 76.54 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Insertion 35923 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -104 Cycle Base Deletion 35923 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Substitution 36169 76.84 27.00 26.20 0.80 After
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Insertion 35825 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -105 Cycle Base Deletion 35825 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Substitution 36201 81.91 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Insertion 35874 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -106 Cycle Base Deletion 35874 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Substitution 36008 66.78 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Insertion 35688 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -107 Cycle Base Deletion 35688 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Substitution 36021 84.33 26.00 26.59 -0.59 After
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Insertion 35690 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -108 Cycle Base Deletion 35690 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Substitution 35897 86.16 26.00 26.59 -0.59 After
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Insertion 35578 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -109 Cycle Base Deletion 35578 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Substitution 39057 62.51 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Insertion 39057 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -11 Cycle Base Deletion 39057 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Substitution 35886 79.86 26.00 26.38 -0.38 After
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Insertion 35542 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -110 Cycle Base Deletion 35542 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Substitution 35706 81.13 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Insertion 35338 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -111 Cycle Base Deletion 35338 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Substitution 35678 65.29 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Insertion 35299 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -112 Cycle Base Deletion 35299 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Substitution 35586 77.34 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Insertion 35228 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -113 Cycle Base Deletion 35228 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Substitution 35470 87.55 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Insertion 35124 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -114 Cycle Base Deletion 35124 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Substitution 35426 88.34 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Insertion 35075 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -115 Cycle Base Deletion 35075 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Substitution 35250 80.93 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Insertion 34895 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -116 Cycle Base Deletion 34895 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Substitution 35154 83.70 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Insertion 34780 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -117 Cycle Base Deletion 34780 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Substitution 35159 69.50 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Insertion 34753 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -118 Cycle Base Deletion 34753 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Substitution 35050 74.36 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Insertion 34658 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -119 Cycle Base Deletion 34658 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Substitution 39049 37.37 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Insertion 39049 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -12 Cycle Base Deletion 39049 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Substitution 34908 93.58 26.00 26.38 -0.38 After
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Insertion 34553 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -120 Cycle Base Deletion 34553 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Substitution 34881 84.66 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Insertion 34512 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -121 Cycle Base Deletion 34512 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Substitution 34655 76.91 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Insertion 34300 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -122 Cycle Base Deletion 34300 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Substitution 34664 90.86 26.00 25.62 0.38 After
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Insertion 34285 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -123 Cycle Base Deletion 34285 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Substitution 34544 79.48 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Insertion 34133 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -124 Cycle Base Deletion 34133 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Substitution 34482 80.73 26.00 26.25 -0.25 After
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Insertion 34092 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -125 Cycle Base Deletion 34092 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Substitution 34427 79.30 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Insertion 34030 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -126 Cycle Base Deletion 34030 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Substitution 34395 87.25 26.00 25.78 0.22 After
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Insertion 34008 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -127 Cycle Base Deletion 34008 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Substitution 34178 78.02 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Insertion 33784 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -128 Cycle Base Deletion 33784 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Substitution 34070 93.89 26.00 25.66 0.34 After
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Insertion 33691 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -129 Cycle Base Deletion 33691 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Substitution 39050 50.68 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Insertion 39050 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -13 Cycle Base Deletion 39050 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Substitution 34014 69.69 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Insertion 33615 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -130 Cycle Base Deletion 33615 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Substitution 33869 90.15 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Insertion 33468 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -131 Cycle Base Deletion 33468 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Substitution 33820 79.94 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Insertion 33405 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -132 Cycle Base Deletion 33405 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Substitution 33690 73.00 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Insertion 33274 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -133 Cycle Base Deletion 33274 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Substitution 33564 66.53 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Insertion 33151 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -134 Cycle Base Deletion 33151 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Substitution 33507 77.35 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Insertion 33079 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -135 Cycle Base Deletion 33079 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Substitution 33293 80.27 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Insertion 32845 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -136 Cycle Base Deletion 32845 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Substitution 33158 72.09 27.00 26.06 0.94 After
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Insertion 32703 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -137 Cycle Base Deletion 32703 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Substitution 33106 69.06 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Insertion 32604 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -138 Cycle Base Deletion 32604 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Substitution 33050 72.71 27.00 26.07 0.93 After
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Insertion 32550 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -139 Cycle Base Deletion 32550 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Substitution 39063 61.84 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Insertion 39063 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -14 Cycle Base Deletion 39063 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Substitution 32984 71.67 27.00 26.13 0.87 After
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Insertion 32444 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -140 Cycle Base Deletion 32444 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Substitution 32837 57.28 27.00 26.19 0.81 After
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Insertion 32276 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -141 Cycle Base Deletion 32276 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Substitution 32742 58.33 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Insertion 32130 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -142 Cycle Base Deletion 32130 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Substitution 32480 55.96 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Insertion 31840 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -143 Cycle Base Deletion 31840 0.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Substitution 32381 52.91 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Insertion 31692 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -144 Cycle Base Deletion 31692 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Substitution 32248 42.56 28.00 26.52 1.48 After
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Insertion 24918 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -145 Cycle Base Deletion 24918 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Substitution 32051 22.35 28.00 26.20 1.80 After
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Insertion 24801 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -146 Cycle Base Deletion 24801 0.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -147 Cycle Base Substitution 31914 16.12 27.00 23.13 3.87 After
REGRESSION.HCC1395_tumor.L001 -148 Cycle Base Substitution 31627 17.87 24.00 16.09 7.91 After
REGRESSION.HCC1395_tumor.L001 -149 Cycle Base Substitution 19779 22.99 22.00 14.17 7.83 After
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Substitution 38947 46.73 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Insertion 38947 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -15 Cycle Base Deletion 38947 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -150 Cycle Base Substitution 6937 14.34 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Substitution 38990 63.07 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Insertion 38990 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -16 Cycle Base Deletion 38990 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Substitution 39020 60.51 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Insertion 39019 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -17 Cycle Base Deletion 39019 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Substitution 39095 48.95 28.00 27.88 0.12 After
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Insertion 39094 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -18 Cycle Base Deletion 39094 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Substitution 38847 61.80 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Insertion 38846 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -19 Cycle Base Deletion 38846 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -2 Cycle Base Substitution 39163 129.18 25.00 25.67 -0.67 After
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Substitution 39000 46.17 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Insertion 38999 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -20 Cycle Base Deletion 38999 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Substitution 38882 56.43 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Insertion 38882 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -21 Cycle Base Deletion 38882 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Substitution 38922 56.46 28.00 27.85 0.15 After
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Insertion 38921 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -22 Cycle Base Deletion 38921 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Substitution 38935 51.67 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Insertion 38934 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -23 Cycle Base Deletion 38934 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Substitution 38931 51.98 28.00 27.82 0.18 After
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Insertion 38930 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -24 Cycle Base Deletion 38930 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Substitution 38900 58.68 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Insertion 38899 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -25 Cycle Base Deletion 38899 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Substitution 38753 50.85 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Insertion 38753 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -26 Cycle Base Deletion 38753 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Substitution 38894 42.28 29.00 27.20 1.80 After
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Insertion 38893 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -27 Cycle Base Deletion 38893 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Substitution 38939 69.23 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Insertion 38935 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -28 Cycle Base Deletion 38935 4.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Substitution 38858 39.48 29.00 27.32 1.68 After
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Insertion 38853 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -29 Cycle Base Deletion 38853 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -3 Cycle Base Substitution 39269 127.62 25.00 26.65 -1.65 After
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Substitution 38846 66.87 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Insertion 38838 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -30 Cycle Base Deletion 38838 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Substitution 38863 57.81 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Insertion 38856 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -31 Cycle Base Deletion 38856 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Substitution 38779 54.90 28.00 26.83 1.17 After
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Insertion 38773 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -32 Cycle Base Deletion 38773 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Substitution 38789 40.30 29.00 27.37 1.63 After
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Insertion 38785 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -33 Cycle Base Deletion 38785 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Substitution 38752 49.38 28.00 26.90 1.10 After
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Insertion 38745 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -34 Cycle Base Deletion 38745 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Substitution 38691 44.67 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Insertion 38683 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -35 Cycle Base Deletion 38683 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Substitution 38804 55.24 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Insertion 38800 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -36 Cycle Base Deletion 38800 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Substitution 38769 50.91 28.00 27.06 0.94 After
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Insertion 38765 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -37 Cycle Base Deletion 38765 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Substitution 38657 71.82 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Insertion 38650 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -38 Cycle Base Deletion 38650 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Substitution 38641 47.76 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Insertion 38636 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -39 Cycle Base Deletion 38636 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -4 Cycle Base Substitution 39123 69.65 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Substitution 38641 54.86 28.00 27.11 0.89 After
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Insertion 38636 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -40 Cycle Base Deletion 38636 4.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Substitution 38627 47.15 28.00 27.21 0.79 After
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Insertion 38620 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -41 Cycle Base Deletion 38620 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Substitution 38698 59.35 28.00 27.28 0.72 After
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Insertion 38692 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -42 Cycle Base Deletion 38692 5.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Substitution 38700 54.27 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Insertion 38692 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -43 Cycle Base Deletion 38692 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Substitution 38724 60.97 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Insertion 38714 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -44 Cycle Base Deletion 38714 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Substitution 38666 61.82 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Insertion 38653 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -45 Cycle Base Deletion 38653 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Substitution 38672 50.84 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Insertion 38661 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -46 Cycle Base Deletion 38661 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Substitution 38602 67.11 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Insertion 38594 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -47 Cycle Base Deletion 38594 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Substitution 38563 56.69 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Insertion 38550 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -48 Cycle Base Deletion 38550 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Substitution 38591 58.32 28.00 26.79 1.21 After
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Insertion 38574 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -49 Cycle Base Deletion 38574 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Substitution 39141 45.62 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Insertion 39141 0.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -5 Cycle Base Deletion 39141 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Substitution 38659 56.66 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Insertion 38635 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -50 Cycle Base Deletion 38635 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Substitution 38697 68.71 27.00 27.14 -0.14 After
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Insertion 38672 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -51 Cycle Base Deletion 38672 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Substitution 38572 68.13 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Insertion 38548 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -52 Cycle Base Deletion 38548 5.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Substitution 38585 60.98 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Insertion 38564 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -53 Cycle Base Deletion 38564 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Substitution 38558 67.38 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Insertion 38532 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -54 Cycle Base Deletion 38532 4.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Substitution 38687 75.54 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Insertion 38657 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -55 Cycle Base Deletion 38657 4.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Substitution 38411 69.64 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Insertion 38371 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -56 Cycle Base Deletion 38371 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Substitution 38559 59.34 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Insertion 38501 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -57 Cycle Base Deletion 38501 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Substitution 38605 53.38 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Insertion 38550 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -58 Cycle Base Deletion 38550 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Substitution 38487 61.52 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Insertion 38415 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -59 Cycle Base Deletion 38415 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Substitution 38921 61.79 28.00 27.31 0.69 After
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Insertion 38921 0.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -6 Cycle Base Deletion 38921 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Substitution 38471 76.34 27.00 27.03 -0.03 After
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Insertion 38403 2.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -60 Cycle Base Deletion 38403 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Substitution 38320 72.13 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Insertion 38248 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -61 Cycle Base Deletion 38248 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Substitution 38514 59.13 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Insertion 38435 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -62 Cycle Base Deletion 38435 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Substitution 38318 52.04 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Insertion 38247 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -63 Cycle Base Deletion 38247 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Substitution 38254 51.47 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Insertion 38174 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -64 Cycle Base Deletion 38174 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Substitution 38258 74.69 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Insertion 38171 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -65 Cycle Base Deletion 38171 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Substitution 38294 65.62 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Insertion 38194 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -66 Cycle Base Deletion 38194 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Substitution 38242 51.85 28.00 26.89 1.11 After
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Insertion 38138 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -67 Cycle Base Deletion 38138 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Substitution 38200 62.20 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Insertion 38091 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -68 Cycle Base Deletion 38091 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Substitution 38232 68.04 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Insertion 38118 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -69 Cycle Base Deletion 38118 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Substitution 39053 74.40 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Insertion 39053 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -7 Cycle Base Deletion 39053 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Substitution 38125 55.96 28.00 27.23 0.77 After
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Insertion 38017 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -70 Cycle Base Deletion 38017 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Substitution 38110 59.96 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Insertion 37986 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -71 Cycle Base Deletion 37986 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Substitution 38094 63.60 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Insertion 37967 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -72 Cycle Base Deletion 37967 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Substitution 38042 70.31 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Insertion 37909 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -73 Cycle Base Deletion 37909 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Substitution 38018 72.49 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Insertion 37874 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -74 Cycle Base Deletion 37874 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Substitution 38038 76.83 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Insertion 37889 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -75 Cycle Base Deletion 37889 4.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Substitution 37872 80.84 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Insertion 37723 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -76 Cycle Base Deletion 37723 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Substitution 37921 67.44 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Insertion 37771 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -77 Cycle Base Deletion 37771 4.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Substitution 37788 64.47 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Insertion 37620 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -78 Cycle Base Deletion 37620 5.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Substitution 37857 66.53 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Insertion 37667 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -79 Cycle Base Deletion 37667 5.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Substitution 39034 74.60 27.00 27.16 -0.16 After
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Insertion 39034 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -8 Cycle Base Deletion 39034 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Substitution 37729 76.71 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Insertion 37555 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -80 Cycle Base Deletion 37555 5.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Substitution 37719 69.37 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Insertion 37525 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -81 Cycle Base Deletion 37525 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Substitution 37722 77.85 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Insertion 37524 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -82 Cycle Base Deletion 37524 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Substitution 37491 74.18 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Insertion 37296 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -83 Cycle Base Deletion 37296 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Substitution 37595 83.17 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Insertion 37404 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -84 Cycle Base Deletion 37404 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Substitution 37500 61.69 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Insertion 37279 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -85 Cycle Base Deletion 37279 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Substitution 37450 78.66 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Insertion 37246 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -86 Cycle Base Deletion 37246 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Substitution 37374 83.12 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Insertion 37139 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -87 Cycle Base Deletion 37139 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Substitution 37300 73.80 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Insertion 37084 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -88 Cycle Base Deletion 37084 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Substitution 37375 80.72 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Insertion 37155 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -89 Cycle Base Deletion 37155 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Substitution 39231 53.17 28.00 27.28 0.72 After
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Insertion 39231 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -9 Cycle Base Deletion 39231 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Substitution 37289 80.55 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Insertion 37046 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -90 Cycle Base Deletion 37046 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Substitution 37187 71.08 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Insertion 36953 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -91 Cycle Base Deletion 36953 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Substitution 37155 63.59 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Insertion 36887 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -92 Cycle Base Deletion 36887 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Substitution 37001 81.23 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Insertion 36733 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -93 Cycle Base Deletion 36733 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Substitution 37170 73.24 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Insertion 36894 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -94 Cycle Base Deletion 36894 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Substitution 36944 80.69 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Insertion 36637 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -95 Cycle Base Deletion 36637 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Substitution 36974 81.91 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Insertion 36660 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -96 Cycle Base Deletion 36660 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Substitution 36841 72.89 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Insertion 36554 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -97 Cycle Base Deletion 36554 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Substitution 36740 84.85 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Insertion 36461 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -98 Cycle Base Deletion 36461 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Substitution 36696 86.82 26.00 26.69 -0.69 After
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Insertion 36417 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 -99 Cycle Base Deletion 36417 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 1 Cycle Base Substitution 38790 83.46 26.00 26.00 0.00 After
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Substitution 39104 48.54 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Insertion 39104 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 10 Cycle Base Deletion 39104 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Substitution 36770 68.68 27.00 27.09 -0.09 After
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Insertion 36470 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 100 Cycle Base Deletion 36470 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Substitution 36623 44.17 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Insertion 36296 0.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 101 Cycle Base Deletion 36296 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Substitution 36451 81.19 26.00 26.88 -0.88 After
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Insertion 36127 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 102 Cycle Base Deletion 36127 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Substitution 36353 50.93 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Insertion 36019 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 103 Cycle Base Deletion 36019 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Substitution 36375 61.29 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Insertion 36056 0.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 104 Cycle Base Deletion 36056 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Substitution 36217 59.02 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Insertion 35882 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 105 Cycle Base Deletion 35882 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Substitution 36074 69.80 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Insertion 35745 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 106 Cycle Base Deletion 35745 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Substitution 36189 66.17 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Insertion 35874 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 107 Cycle Base Deletion 35874 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Substitution 36025 86.90 26.00 26.68 -0.68 After
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Insertion 35689 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 108 Cycle Base Deletion 35689 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Substitution 35874 68.08 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Insertion 35545 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 109 Cycle Base Deletion 35545 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Substitution 39034 43.11 29.00 27.51 1.49 After
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Insertion 39034 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 11 Cycle Base Deletion 39034 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Substitution 35797 57.90 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Insertion 35445 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 110 Cycle Base Deletion 35445 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Substitution 35722 69.04 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Insertion 35362 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 111 Cycle Base Deletion 35362 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Substitution 35744 75.74 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Insertion 35392 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 112 Cycle Base Deletion 35392 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Substitution 35710 78.66 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Insertion 35345 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 113 Cycle Base Deletion 35345 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Substitution 35396 70.96 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Insertion 35067 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 114 Cycle Base Deletion 35067 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Substitution 35492 72.20 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Insertion 35149 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 115 Cycle Base Deletion 35149 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Substitution 35308 59.98 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Insertion 34945 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 116 Cycle Base Deletion 34945 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Substitution 35188 78.72 26.00 26.77 -0.77 After
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Insertion 34823 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 117 Cycle Base Deletion 34823 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Substitution 35134 68.81 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Insertion 34758 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 118 Cycle Base Deletion 34758 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Substitution 35064 70.43 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Insertion 34690 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 119 Cycle Base Deletion 34690 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Substitution 39124 39.21 29.00 27.60 1.40 After
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Insertion 39124 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 12 Cycle Base Deletion 39124 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Substitution 35031 82.47 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Insertion 34670 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 120 Cycle Base Deletion 34670 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Substitution 34886 67.90 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Insertion 34546 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 121 Cycle Base Deletion 34546 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Substitution 34799 66.65 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Insertion 34447 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 122 Cycle Base Deletion 34447 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Substitution 34805 65.46 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Insertion 34421 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 123 Cycle Base Deletion 34421 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Substitution 34695 58.56 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Insertion 34300 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 124 Cycle Base Deletion 34300 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Substitution 34561 68.52 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Insertion 34177 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 125 Cycle Base Deletion 34177 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Substitution 34357 71.50 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Insertion 33972 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 126 Cycle Base Deletion 33972 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Substitution 34352 56.20 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Insertion 33975 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 127 Cycle Base Deletion 33975 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Substitution 34263 82.39 26.00 26.63 -0.63 After
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Insertion 33871 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 128 Cycle Base Deletion 33871 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Substitution 34245 63.21 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Insertion 33880 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 129 Cycle Base Deletion 33880 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Substitution 39102 40.01 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Insertion 39102 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 13 Cycle Base Deletion 39102 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Substitution 34002 70.27 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Insertion 33616 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 130 Cycle Base Deletion 33616 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Substitution 33925 64.68 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Insertion 33533 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 131 Cycle Base Deletion 33533 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Substitution 33814 65.25 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Insertion 33410 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 132 Cycle Base Deletion 33410 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Substitution 33800 78.23 26.00 26.67 -0.67 After
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Insertion 33409 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 133 Cycle Base Deletion 33409 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Substitution 33724 75.20 26.00 26.50 -0.50 After
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Insertion 33329 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 134 Cycle Base Deletion 33329 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Substitution 33543 73.97 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Insertion 33139 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 135 Cycle Base Deletion 33139 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Substitution 33419 48.21 28.00 26.69 1.31 After
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Insertion 33003 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 136 Cycle Base Deletion 33003 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Substitution 33442 65.71 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Insertion 33029 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 137 Cycle Base Deletion 33029 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Substitution 33253 71.33 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Insertion 32798 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 138 Cycle Base Deletion 32798 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Substitution 33140 73.29 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Insertion 32687 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 139 Cycle Base Deletion 32687 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Substitution 39086 44.09 29.00 28.11 0.89 After
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Insertion 39086 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 14 Cycle Base Deletion 39086 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Substitution 33011 64.28 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Insertion 32550 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 140 Cycle Base Deletion 32550 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Substitution 33034 52.45 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Insertion 32570 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 141 Cycle Base Deletion 32570 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Substitution 32734 78.43 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Insertion 32268 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 142 Cycle Base Deletion 32268 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Substitution 32718 77.88 26.00 25.70 0.30 After
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Insertion 32265 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 143 Cycle Base Deletion 32265 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Substitution 32545 66.90 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Insertion 32099 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 144 Cycle Base Deletion 32099 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Substitution 32432 76.11 26.00 26.66 -0.66 After
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Insertion 31981 0.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 145 Cycle Base Deletion 31981 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Substitution 32374 67.09 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Insertion 31972 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 146 Cycle Base Deletion 31972 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 147 Cycle Base Substitution 32229 63.44 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L001 148 Cycle Base Substitution 32179 79.21 26.00 26.67 -0.67 After
REGRESSION.HCC1395_tumor.L001 149 Cycle Base Substitution 32045 81.99 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Substitution 39075 34.31 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Insertion 39075 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 15 Cycle Base Deletion 39075 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 150 Cycle Base Substitution 31860 78.16 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Substitution 38959 38.85 29.00 28.63 0.37 After
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Insertion 38959 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 16 Cycle Base Deletion 38959 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Substitution 38797 33.94 29.00 28.67 0.33 After
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Insertion 38796 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 17 Cycle Base Deletion 38796 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Substitution 38964 30.04 30.00 28.53 1.47 After
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Insertion 38963 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 18 Cycle Base Deletion 38963 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Substitution 39020 27.13 30.00 28.68 1.32 After
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Insertion 39019 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 19 Cycle Base Deletion 39019 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 2 Cycle Base Substitution 39209 76.87 27.00 27.19 -0.19 After
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Substitution 38888 25.18 30.00 28.67 1.33 After
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Insertion 38887 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 20 Cycle Base Deletion 38887 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Substitution 38936 38.08 29.00 28.63 0.37 After
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Insertion 38936 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 21 Cycle Base Deletion 38936 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Substitution 38905 21.20 31.00 29.13 1.87 After
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Insertion 38905 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 22 Cycle Base Deletion 38905 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Substitution 38949 27.85 30.00 28.52 1.48 After
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Insertion 38949 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 23 Cycle Base Deletion 38949 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Substitution 38918 25.56 30.00 28.58 1.42 After
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Insertion 38918 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 24 Cycle Base Deletion 38918 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Substitution 38890 28.74 30.00 28.83 1.17 After
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Insertion 38890 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 25 Cycle Base Deletion 38890 5.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Substitution 38992 45.37 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Insertion 38992 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 26 Cycle Base Deletion 38992 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Substitution 38928 29.95 29.00 27.91 1.09 After
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Insertion 38927 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 27 Cycle Base Deletion 38927 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Substitution 38917 43.34 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Insertion 38917 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 28 Cycle Base Deletion 38917 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Substitution 38961 38.48 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Insertion 38960 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 29 Cycle Base Deletion 38960 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 3 Cycle Base Substitution 39189 102.28 26.00 27.21 -1.21 After
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Substitution 38899 37.65 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Insertion 38898 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 30 Cycle Base Deletion 38898 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Substitution 38835 38.40 29.00 28.03 0.97 After
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Insertion 38835 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 31 Cycle Base Deletion 38835 5.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Substitution 38868 50.94 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Insertion 38866 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 32 Cycle Base Deletion 38866 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Substitution 38679 48.89 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Insertion 38677 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 33 Cycle Base Deletion 38677 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Substitution 38833 56.09 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Insertion 38831 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 34 Cycle Base Deletion 38831 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Substitution 38799 47.48 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Insertion 38795 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 35 Cycle Base Deletion 38795 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Substitution 38899 49.63 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Insertion 38893 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 36 Cycle Base Deletion 38893 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Substitution 38747 40.82 29.00 28.10 0.90 After
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Insertion 38739 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 37 Cycle Base Deletion 38739 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Substitution 38878 45.23 29.00 28.06 0.94 After
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Insertion 38866 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 38 Cycle Base Deletion 38866 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Substitution 38814 33.66 29.00 28.17 0.83 After
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Insertion 38805 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 39 Cycle Base Deletion 38805 4.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 4 Cycle Base Substitution 39138 77.83 27.00 27.17 -0.17 After
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Substitution 38909 40.83 29.00 28.14 0.86 After
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Insertion 38903 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 40 Cycle Base Deletion 38903 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Substitution 38815 56.65 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Insertion 38809 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 41 Cycle Base Deletion 38809 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Substitution 38712 54.49 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Insertion 38708 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 42 Cycle Base Deletion 38708 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Substitution 38699 40.38 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Insertion 38692 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 43 Cycle Base Deletion 38692 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Substitution 38859 42.17 29.00 28.35 0.65 After
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Insertion 38849 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 44 Cycle Base Deletion 38849 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Substitution 38585 40.07 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Insertion 38575 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 45 Cycle Base Deletion 38575 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Substitution 38675 39.34 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Insertion 38663 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 46 Cycle Base Deletion 38663 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Substitution 38632 49.39 29.00 28.10 0.90 After
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Insertion 38623 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 47 Cycle Base Deletion 38623 4.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Substitution 38706 44.45 29.00 28.03 0.97 After
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Insertion 38692 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 48 Cycle Base Deletion 38692 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Substitution 38732 38.25 29.00 28.16 0.84 After
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Insertion 38715 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 49 Cycle Base Deletion 38715 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Substitution 39086 52.16 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Insertion 39086 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 5 Cycle Base Deletion 39086 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Substitution 38596 48.43 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Insertion 38570 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 50 Cycle Base Deletion 38570 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Substitution 38601 53.96 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Insertion 38577 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 51 Cycle Base Deletion 38577 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Substitution 38634 46.21 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Insertion 38612 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 52 Cycle Base Deletion 38612 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Substitution 38636 46.54 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Insertion 38613 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 53 Cycle Base Deletion 38613 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Substitution 38527 46.46 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Insertion 38502 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 54 Cycle Base Deletion 38502 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Substitution 38613 41.89 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Insertion 38584 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 55 Cycle Base Deletion 38584 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Substitution 38519 50.41 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Insertion 38480 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 56 Cycle Base Deletion 38480 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Substitution 38593 76.84 27.00 27.52 -0.52 After
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Insertion 38542 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 57 Cycle Base Deletion 38542 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Substitution 38533 43.13 29.00 27.62 1.38 After
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Insertion 38479 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 58 Cycle Base Deletion 38479 5.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Substitution 38540 42.71 29.00 28.08 0.92 After
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Insertion 38469 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 59 Cycle Base Deletion 38469 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Substitution 39103 59.83 28.00 27.61 0.39 After
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Insertion 39103 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 6 Cycle Base Deletion 39103 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Substitution 38480 54.72 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Insertion 38414 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 60 Cycle Base Deletion 38414 5.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Substitution 38521 52.34 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Insertion 38454 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 61 Cycle Base Deletion 38454 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Substitution 38532 49.48 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Insertion 38459 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 62 Cycle Base Deletion 38459 4.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Substitution 38436 65.72 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Insertion 38359 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 63 Cycle Base Deletion 38359 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Substitution 38472 43.35 29.00 27.52 1.48 After
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Insertion 38382 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 64 Cycle Base Deletion 38382 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Substitution 38303 49.66 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Insertion 38219 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 65 Cycle Base Deletion 38219 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Substitution 38220 60.44 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Insertion 38122 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 66 Cycle Base Deletion 38122 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Substitution 38396 52.29 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Insertion 38290 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 67 Cycle Base Deletion 38290 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Substitution 38350 60.28 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Insertion 38237 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 68 Cycle Base Deletion 38237 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Substitution 38240 47.06 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Insertion 38117 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 69 Cycle Base Deletion 38117 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Substitution 39152 46.03 29.00 28.10 0.90 After
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Insertion 39152 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 7 Cycle Base Deletion 39152 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Substitution 38313 53.03 28.00 27.86 0.14 After
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Insertion 38199 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 70 Cycle Base Deletion 38199 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Substitution 38096 49.01 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Insertion 37979 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 71 Cycle Base Deletion 37979 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Substitution 38058 56.07 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Insertion 37936 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 72 Cycle Base Deletion 37936 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Substitution 38155 71.89 27.00 27.16 -0.16 After
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Insertion 38017 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 73 Cycle Base Deletion 38017 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Substitution 38051 55.60 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Insertion 37911 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 74 Cycle Base Deletion 37911 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Substitution 38077 60.77 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Insertion 37926 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 75 Cycle Base Deletion 37926 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Substitution 38099 49.52 28.00 27.41 0.59 After
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Insertion 37938 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 76 Cycle Base Deletion 37938 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Substitution 38009 63.92 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Insertion 37852 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 77 Cycle Base Deletion 37852 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Substitution 37794 49.91 28.00 27.38 0.62 After
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Insertion 37619 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 78 Cycle Base Deletion 37619 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Substitution 37743 68.38 27.00 27.12 -0.12 After
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Insertion 37552 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 79 Cycle Base Deletion 37552 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Substitution 39148 43.60 29.00 27.80 1.20 After
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Insertion 39148 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 8 Cycle Base Deletion 39148 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Substitution 37821 58.21 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Insertion 37633 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 80 Cycle Base Deletion 37633 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Substitution 37800 67.59 27.00 27.35 -0.35 After
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Insertion 37602 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 81 Cycle Base Deletion 37602 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Substitution 37729 57.24 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Insertion 37524 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 82 Cycle Base Deletion 37524 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Substitution 37739 77.45 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Insertion 37541 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 83 Cycle Base Deletion 37541 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Substitution 37570 70.91 27.00 27.60 -0.60 After
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Insertion 37348 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 84 Cycle Base Deletion 37348 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Substitution 37617 57.52 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Insertion 37388 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 85 Cycle Base Deletion 37388 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Substitution 37383 64.02 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Insertion 37168 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 86 Cycle Base Deletion 37168 3.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Substitution 37440 57.19 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Insertion 37219 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 87 Cycle Base Deletion 37219 4.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Substitution 37378 64.01 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Insertion 37156 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 88 Cycle Base Deletion 37156 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Substitution 37449 59.25 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Insertion 37229 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 89 Cycle Base Deletion 37229 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Substitution 39166 37.41 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Insertion 39166 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 9 Cycle Base Deletion 39166 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Substitution 37387 67.49 27.00 27.06 -0.06 After
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Insertion 37148 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 90 Cycle Base Deletion 37148 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Substitution 37317 60.69 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Insertion 37091 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 91 Cycle Base Deletion 37091 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Substitution 37306 77.44 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Insertion 37043 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 92 Cycle Base Deletion 37043 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Substitution 37089 63.95 28.00 27.36 0.64 After
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Insertion 36809 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 93 Cycle Base Deletion 36809 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Substitution 37152 67.13 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Insertion 36873 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 94 Cycle Base Deletion 36873 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Substitution 37060 68.09 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Insertion 36760 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 95 Cycle Base Deletion 36760 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Substitution 37010 72.05 27.00 27.16 -0.16 After
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Insertion 36709 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 96 Cycle Base Deletion 36709 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Substitution 36950 76.24 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Insertion 36661 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 97 Cycle Base Deletion 36661 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Substitution 36692 73.00 27.00 27.32 -0.32 After
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Insertion 36407 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 98 Cycle Base Deletion 36407 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Substitution 36705 67.67 27.00 27.09 -0.09 After
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Insertion 36433 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 99 Cycle Base Deletion 36433 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L001 10 QualityScore Base Substitution 26734 2854.95 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L001 11 QualityScore Base Substitution 15245 1107.94 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L001 12 QualityScore Base Substitution 11996 719.42 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L001 13 QualityScore Base Substitution 21104 748.26 14.00 13.00 1.00 After
REGRESSION.HCC1395_tumor.L001 14 QualityScore Base Substitution 13192 218.95 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L001 15 QualityScore Base Substitution 17272 13.56 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L001 16 QualityScore Base Substitution 8211 0.78 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L001 17 QualityScore Base Substitution 14371 1.31 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L001 21 QualityScore Base Substitution 103 0.00 21.00 21.00 0.00 After
REGRESSION.HCC1395_tumor.L001 22 QualityScore Base Substitution 30847 238.81 21.00 22.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 23 QualityScore Base Substitution 48896 344.64 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 24 QualityScore Base Substitution 161659 616.09 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L001 25 QualityScore Base Substitution 99901 139.82 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L001 28 QualityScore Base Substitution 7743 3.01 28.00 28.00 0.00 After
REGRESSION.HCC1395_tumor.L001 29 QualityScore Base Substitution 69319 124.14 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 30 QualityScore Base Substitution 2513041 1539.07 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L001 31 QualityScore Base Substitution 2884013 1273.09 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L001 32 QualityScore Base Substitution 4680185 1139.18 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L001 33 QualityScore Base Substitution 398194 68.81 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L001 45 QualityScore Base Insertion 11074895 478.23 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 45 QualityScore Base Deletion 11074895 960.45 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L001 8 QualityScore Base Substitution 1117 208.43 7.00 8.00 -1.00 After
REGRESSION.HCC1395_tumor.L001 9 QualityScore Base Substitution 51752 7388.79 8.00 9.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 AA Context Base Substitution 841167 1912.70 26.00 25.40 0.60 After
REGRESSION.HCC1395_tumor.L002 AAA Context Base Insertion 299139 69.65 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L002 AAA Context Base Deletion 299139 221.07 36.00 45.00 -9.00 After
REGRESSION.HCC1395_tumor.L002 AAC Context Base Insertion 133089 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAC Context Base Deletion 133089 7.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAG Context Base Insertion 199802 7.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAG Context Base Deletion 199802 8.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAT Context Base Insertion 174907 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AAT Context Base Deletion 174907 13.83 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 AC Context Base Substitution 533754 1895.29 25.00 24.67 0.33 After
REGRESSION.HCC1395_tumor.L002 ACA Context Base Insertion 205606 20.74 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 ACA Context Base Deletion 205606 39.50 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L002 ACC Context Base Insertion 147709 6.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACC Context Base Deletion 147709 6.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACG Context Base Insertion 30890 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACG Context Base Deletion 30890 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACT Context Base Insertion 158554 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ACT Context Base Deletion 158554 11.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AG Context Base Substitution 807425 633.10 31.00 28.65 2.35 After
REGRESSION.HCC1395_tumor.L002 AGA Context Base Insertion 225151 5.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGA Context Base Deletion 225151 9.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGC Context Base Insertion 193670 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGC Context Base Deletion 193670 9.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGG Context Base Insertion 229747 14.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGG Context Base Deletion 229747 7.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGT Context Base Insertion 155012 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AGT Context Base Deletion 155012 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 AT Context Base Substitution 604858 630.68 30.00 27.54 2.46 After
REGRESSION.HCC1395_tumor.L002 ATA Context Base Insertion 134636 7.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATA Context Base Deletion 134636 5.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATC Context Base Insertion 122468 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATC Context Base Deletion 122468 9.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATG Context Base Insertion 175366 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATG Context Base Deletion 175366 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATT Context Base Insertion 182578 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 ATT Context Base Deletion 182578 7.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CA Context Base Substitution 862947 1908.13 27.00 25.71 1.29 After
REGRESSION.HCC1395_tumor.L002 CAA Context Base Insertion 173441 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CAA Context Base Deletion 173441 14.06 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 CAC Context Base Insertion 184991 24.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 CAC Context Base Deletion 184991 40.64 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L002 CAG Context Base Insertion 294804 7.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CAG Context Base Deletion 294804 8.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CAT Context Base Insertion 171091 8.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CAT Context Base Deletion 171091 5.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CC Context Base Substitution 768879 2400.92 25.00 24.64 0.36 After
REGRESSION.HCC1395_tumor.L002 CCA Context Base Insertion 247731 6.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCA Context Base Deletion 247731 7.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCC Context Base Insertion 212877 13.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCC Context Base Deletion 212877 16.21 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 CCG Context Base Insertion 53844 7.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCG Context Base Deletion 53844 6.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCT Context Base Insertion 244372 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CCT Context Base Deletion 244372 9.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CG Context Base Substitution 161385 561.08 25.00 24.76 0.24 After
REGRESSION.HCC1395_tumor.L002 CGA Context Base Insertion 56760 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGA Context Base Deletion 56760 0.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGC Context Base Insertion 80897 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGC Context Base Deletion 80897 8.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGG Context Base Insertion 97608 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGG Context Base Deletion 97608 8.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGT Context Base Insertion 63103 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CGT Context Base Deletion 63103 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CT Context Base Substitution 845131 406.95 33.00 29.58 3.42 After
REGRESSION.HCC1395_tumor.L002 CTA Context Base Insertion 96720 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTA Context Base Deletion 96720 7.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTC Context Base Insertion 204589 5.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTC Context Base Deletion 204589 15.58 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 CTG Context Base Insertion 294048 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTG Context Base Deletion 294048 13.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTT Context Base Insertion 210921 6.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 CTT Context Base Deletion 210921 9.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GA Context Base Substitution 708361 1061.09 28.00 26.48 1.52 After
REGRESSION.HCC1395_tumor.L002 GAA Context Base Insertion 210830 5.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAA Context Base Deletion 210830 6.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAC Context Base Insertion 118842 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAC Context Base Deletion 118842 7.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAG Context Base Insertion 209914 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAG Context Base Deletion 209914 7.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAT Context Base Insertion 126303 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GAT Context Base Deletion 126303 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GC Context Base Substitution 666973 1509.45 26.00 25.87 0.13 After
REGRESSION.HCC1395_tumor.L002 GCA Context Base Insertion 206465 5.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCA Context Base Deletion 206465 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCC Context Base Insertion 200895 4.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCC Context Base Deletion 200895 12.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCG Context Base Insertion 48917 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCG Context Base Deletion 48917 6.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCT Context Base Insertion 211141 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GCT Context Base Deletion 211141 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GG Context Base Substitution 794636 729.11 30.00 27.62 2.38 After
REGRESSION.HCC1395_tumor.L002 GGA Context Base Insertion 215837 22.44 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 GGA Context Base Deletion 215837 14.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGC Context Base Insertion 197672 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGC Context Base Deletion 197672 6.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGG Context Base Insertion 218989 9.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGG Context Base Deletion 218989 28.25 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 GGT Context Base Insertion 159512 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GGT Context Base Deletion 159512 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GT Context Base Substitution 592869 1023.95 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L002 GTA Context Base Insertion 101790 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTA Context Base Deletion 101790 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTC Context Base Insertion 127082 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTC Context Base Deletion 127082 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTG Context Base Insertion 201305 17.38 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 GTG Context Base Deletion 201305 32.74 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 GTT Context Base Insertion 149543 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 GTT Context Base Deletion 149543 11.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TA Context Base Substitution 484385 1248.30 26.00 24.87 1.13 After
REGRESSION.HCC1395_tumor.L002 TAA Context Base Insertion 150510 11.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAA Context Base Deletion 150510 17.55 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 TAC Context Base Insertion 93419 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAC Context Base Deletion 93419 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAG Context Base Insertion 96676 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAG Context Base Deletion 96676 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAT Context Base Insertion 128162 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TAT Context Base Deletion 128162 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TC Context Base Substitution 652015 1669.40 26.00 25.40 0.60 After
REGRESSION.HCC1395_tumor.L002 TCA Context Base Insertion 196370 6.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCA Context Base Deletion 196370 11.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCC Context Base Insertion 202387 28.89 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 TCC Context Base Deletion 202387 8.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCG Context Base Insertion 26520 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCG Context Base Deletion 26520 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCT Context Base Insertion 225353 7.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TCT Context Base Deletion 225353 13.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TG Context Base Substitution 848703 368.26 33.00 29.34 3.66 After
REGRESSION.HCC1395_tumor.L002 TGA Context Base Insertion 205309 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGA Context Base Deletion 205309 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGC Context Base Insertion 190439 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGC Context Base Deletion 190439 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGG Context Base Insertion 242534 6.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGG Context Base Deletion 242534 6.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TGT Context Base Insertion 211329 16.48 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 TGT Context Base Deletion 211329 35.58 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L002 TT Context Base Substitution 844199 931.24 30.00 28.21 1.79 After
REGRESSION.HCC1395_tumor.L002 TTA Context Base Insertion 147680 10.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTA Context Base Deletion 147680 8.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTC Context Base Insertion 193970 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTC Context Base Deletion 193970 9.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTG Context Base Insertion 171995 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTG Context Base Deletion 171995 5.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 TTT Context Base Insertion 295428 64.62 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L002 TTT Context Base Deletion 295428 156.85 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L002 -1 Cycle Base Substitution 38798 179.22 23.00 23.54 -0.54 After
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Substitution 39005 53.60 28.00 27.34 0.66 After
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Insertion 39005 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -10 Cycle Base Deletion 39005 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Substitution 36582 82.39 26.00 26.47 -0.47 After
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Insertion 36279 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -100 Cycle Base Deletion 36279 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Substitution 36524 69.29 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Insertion 36187 4.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -101 Cycle Base Deletion 36187 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Substitution 36411 83.95 26.00 26.30 -0.30 After
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Insertion 36102 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -102 Cycle Base Deletion 36102 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Substitution 36368 80.29 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Insertion 36034 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -103 Cycle Base Deletion 36034 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Substitution 36467 74.70 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Insertion 36118 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -104 Cycle Base Deletion 36118 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Substitution 36317 58.68 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Insertion 36004 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -105 Cycle Base Deletion 36004 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Substitution 36138 78.27 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Insertion 35830 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -106 Cycle Base Deletion 35830 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Substitution 36076 73.89 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Insertion 35769 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -107 Cycle Base Deletion 35769 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Substitution 35970 87.27 26.00 25.66 0.34 After
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Insertion 35678 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -108 Cycle Base Deletion 35678 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Substitution 35856 64.70 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Insertion 35550 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -109 Cycle Base Deletion 35550 4.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Substitution 38969 45.32 29.00 27.54 1.46 After
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Insertion 38968 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -11 Cycle Base Deletion 38968 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Substitution 35800 90.04 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Insertion 35472 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -110 Cycle Base Deletion 35472 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Substitution 35834 76.59 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Insertion 35517 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -111 Cycle Base Deletion 35517 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Substitution 35650 90.77 26.00 25.51 0.49 After
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Insertion 35326 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -112 Cycle Base Deletion 35326 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Substitution 35642 82.61 26.00 26.30 -0.30 After
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Insertion 35332 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -113 Cycle Base Deletion 35332 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Substitution 35490 81.00 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Insertion 35170 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -114 Cycle Base Deletion 35170 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Substitution 35415 74.35 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Insertion 35087 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -115 Cycle Base Deletion 35087 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Substitution 35458 70.99 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Insertion 35102 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -116 Cycle Base Deletion 35102 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Substitution 35131 81.58 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Insertion 34755 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -117 Cycle Base Deletion 34755 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Substitution 35170 79.60 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Insertion 34797 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -118 Cycle Base Deletion 34797 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Substitution 35011 101.83 26.00 26.14 -0.14 After
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Insertion 34624 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -119 Cycle Base Deletion 34624 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Substitution 39072 59.26 28.00 27.74 0.26 After
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Insertion 39071 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -12 Cycle Base Deletion 39071 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Substitution 34948 90.74 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Insertion 34590 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -120 Cycle Base Deletion 34590 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Substitution 34889 86.61 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Insertion 34539 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -121 Cycle Base Deletion 34539 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Substitution 34903 69.81 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Insertion 34528 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -122 Cycle Base Deletion 34528 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Substitution 34801 72.61 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Insertion 34433 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -123 Cycle Base Deletion 34433 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Substitution 34641 78.11 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Insertion 34300 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -124 Cycle Base Deletion 34300 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Substitution 34496 73.20 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Insertion 34125 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -125 Cycle Base Deletion 34125 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Substitution 34477 97.23 25.00 25.61 -0.61 After
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Insertion 34109 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -126 Cycle Base Deletion 34109 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Substitution 34263 95.00 26.00 25.57 0.43 After
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Insertion 33901 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -127 Cycle Base Deletion 33901 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Substitution 34276 73.59 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Insertion 33884 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -128 Cycle Base Deletion 33884 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Substitution 34161 75.40 27.00 26.11 0.89 After
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Insertion 33772 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -129 Cycle Base Deletion 33772 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Substitution 39087 60.05 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Insertion 39087 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -13 Cycle Base Deletion 39087 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Substitution 34095 69.76 27.00 26.14 0.86 After
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Insertion 33730 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -130 Cycle Base Deletion 33730 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Substitution 33993 81.45 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Insertion 33605 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -131 Cycle Base Deletion 33605 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Substitution 33972 82.86 26.00 25.90 0.10 After
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Insertion 33562 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -132 Cycle Base Deletion 33562 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Substitution 33774 68.49 27.00 26.08 0.92 After
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Insertion 33363 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -133 Cycle Base Deletion 33363 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Substitution 33687 80.15 26.00 26.08 -0.08 After
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Insertion 33252 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -134 Cycle Base Deletion 33252 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Substitution 33553 94.94 25.00 25.51 -0.51 After
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Insertion 33126 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -135 Cycle Base Deletion 33126 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Substitution 33408 73.36 27.00 26.09 0.91 After
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Insertion 32964 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -136 Cycle Base Deletion 32964 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Substitution 33444 72.73 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Insertion 32983 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -137 Cycle Base Deletion 32983 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Substitution 33240 90.84 26.00 26.06 -0.06 After
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Insertion 32775 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -138 Cycle Base Deletion 32775 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Substitution 33141 72.09 26.00 25.87 0.13 After
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Insertion 32646 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -139 Cycle Base Deletion 32646 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Substitution 39032 57.14 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Insertion 39031 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -14 Cycle Base Deletion 39031 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Substitution 33025 75.20 26.00 25.71 0.29 After
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Insertion 32502 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -140 Cycle Base Deletion 32502 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Substitution 33040 75.18 26.00 26.10 -0.10 After
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Insertion 32467 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -141 Cycle Base Deletion 32467 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Substitution 32868 68.18 27.00 26.16 0.84 After
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Insertion 32184 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -142 Cycle Base Deletion 32184 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Substitution 32715 50.23 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Insertion 31991 0.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -143 Cycle Base Deletion 31991 0.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Substitution 32584 47.16 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Insertion 31838 0.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -144 Cycle Base Deletion 31838 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Substitution 32491 51.21 27.00 26.23 0.77 After
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Insertion 25016 0.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -145 Cycle Base Deletion 25016 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Substitution 32193 23.08 28.00 26.14 1.86 After
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Insertion 24892 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -146 Cycle Base Deletion 24892 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -147 Cycle Base Substitution 32069 17.27 26.00 22.35 3.65 After
REGRESSION.HCC1395_tumor.L002 -148 Cycle Base Substitution 31768 22.20 23.00 15.18 7.82 After
REGRESSION.HCC1395_tumor.L002 -149 Cycle Base Substitution 19730 24.44 22.00 14.17 7.83 After
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Substitution 39004 61.02 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Insertion 39004 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -15 Cycle Base Deletion 39004 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -150 Cycle Base Substitution 6952 12.53 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Substitution 39094 54.94 28.00 27.86 0.14 After
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Insertion 39094 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -16 Cycle Base Deletion 39094 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Substitution 39034 62.47 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Insertion 39034 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -17 Cycle Base Deletion 39034 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Substitution 38933 68.12 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Insertion 38932 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -18 Cycle Base Deletion 38932 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Substitution 39027 66.29 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Insertion 39026 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -19 Cycle Base Deletion 39026 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -2 Cycle Base Substitution 39160 140.50 25.00 25.46 -0.46 After
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Substitution 38971 54.31 28.00 27.56 0.44 After
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Insertion 38969 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -20 Cycle Base Deletion 38969 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Substitution 38919 55.24 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Insertion 38917 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -21 Cycle Base Deletion 38917 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Substitution 38843 58.40 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Insertion 38842 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -22 Cycle Base Deletion 38842 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Substitution 38982 48.04 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Insertion 38981 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -23 Cycle Base Deletion 38981 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Substitution 38976 53.49 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Insertion 38975 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -24 Cycle Base Deletion 38975 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Substitution 38902 57.51 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Insertion 38901 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -25 Cycle Base Deletion 38901 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Substitution 38906 49.89 28.00 26.66 1.34 After
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Insertion 38905 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -26 Cycle Base Deletion 38905 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Substitution 38930 53.63 28.00 26.57 1.43 After
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Insertion 38928 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -27 Cycle Base Deletion 38928 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Substitution 38878 64.38 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Insertion 38875 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -28 Cycle Base Deletion 38875 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Substitution 39005 63.45 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Insertion 39001 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -29 Cycle Base Deletion 39001 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -3 Cycle Base Substitution 39266 136.90 25.00 26.39 -1.39 After
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Substitution 38900 59.71 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Insertion 38895 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -30 Cycle Base Deletion 38895 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Substitution 38872 68.44 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Insertion 38868 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -31 Cycle Base Deletion 38868 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Substitution 38951 50.74 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Insertion 38946 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -32 Cycle Base Deletion 38946 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Substitution 38864 60.87 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Insertion 38858 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -33 Cycle Base Deletion 38858 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Substitution 38847 59.63 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Insertion 38840 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -34 Cycle Base Deletion 38840 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Substitution 38856 63.61 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Insertion 38848 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -35 Cycle Base Deletion 38848 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Substitution 38791 54.24 28.00 26.55 1.45 After
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Insertion 38787 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -36 Cycle Base Deletion 38787 5.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Substitution 38852 60.23 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Insertion 38844 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -37 Cycle Base Deletion 38844 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Substitution 38769 62.84 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Insertion 38763 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -38 Cycle Base Deletion 38763 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Substitution 38800 63.69 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Insertion 38795 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -39 Cycle Base Deletion 38795 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -4 Cycle Base Substitution 39203 80.39 27.00 26.07 0.93 After
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Substitution 38749 59.78 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Insertion 38745 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -40 Cycle Base Deletion 38745 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Substitution 38746 60.81 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Insertion 38745 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -41 Cycle Base Deletion 38745 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Substitution 38690 54.36 28.00 26.58 1.42 After
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Insertion 38689 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -42 Cycle Base Deletion 38689 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Substitution 38807 66.41 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Insertion 38802 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -43 Cycle Base Deletion 38802 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Substitution 38581 56.63 28.00 26.75 1.25 After
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Insertion 38575 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -44 Cycle Base Deletion 38575 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Substitution 38760 51.16 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Insertion 38751 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -45 Cycle Base Deletion 38751 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Substitution 38707 64.72 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Insertion 38696 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -46 Cycle Base Deletion 38696 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Substitution 38690 50.78 28.00 27.23 0.77 After
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Insertion 38683 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -47 Cycle Base Deletion 38683 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Substitution 38608 46.78 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Insertion 38598 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -48 Cycle Base Deletion 38598 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Substitution 38693 68.30 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Insertion 38678 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -49 Cycle Base Deletion 38678 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Substitution 39151 65.69 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Insertion 39151 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -5 Cycle Base Deletion 39151 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Substitution 38519 65.16 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Insertion 38490 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -50 Cycle Base Deletion 38490 5.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Substitution 38569 54.57 28.00 26.71 1.29 After
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Insertion 38533 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -51 Cycle Base Deletion 38533 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Substitution 38589 64.28 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Insertion 38551 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -52 Cycle Base Deletion 38551 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Substitution 38535 57.03 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Insertion 38498 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -53 Cycle Base Deletion 38498 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Substitution 38594 63.28 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Insertion 38563 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -54 Cycle Base Deletion 38563 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Substitution 38704 63.07 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Insertion 38670 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -55 Cycle Base Deletion 38670 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Substitution 38550 67.10 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Insertion 38514 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -56 Cycle Base Deletion 38514 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Substitution 38508 64.55 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Insertion 38456 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -57 Cycle Base Deletion 38456 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Substitution 38624 56.64 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Insertion 38563 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -58 Cycle Base Deletion 38563 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Substitution 38566 59.65 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Insertion 38498 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -59 Cycle Base Deletion 38498 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Substitution 39105 68.19 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Insertion 39105 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -6 Cycle Base Deletion 39105 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Substitution 38388 65.41 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Insertion 38317 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -60 Cycle Base Deletion 38317 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Substitution 38553 71.30 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Insertion 38478 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -61 Cycle Base Deletion 38478 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Substitution 38380 55.39 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Insertion 38308 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -62 Cycle Base Deletion 38308 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Substitution 38366 58.25 28.00 26.83 1.17 After
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Insertion 38300 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -63 Cycle Base Deletion 38300 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Substitution 38390 53.75 28.00 26.97 1.03 After
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Insertion 38311 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -64 Cycle Base Deletion 38311 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Substitution 38270 68.58 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Insertion 38180 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -65 Cycle Base Deletion 38180 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Substitution 38256 64.37 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Insertion 38169 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -66 Cycle Base Deletion 38169 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Substitution 38261 51.27 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Insertion 38156 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -67 Cycle Base Deletion 38156 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Substitution 38219 71.77 27.00 27.11 -0.11 After
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Insertion 38111 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -68 Cycle Base Deletion 38111 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Substitution 38250 54.47 28.00 26.67 1.33 After
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Insertion 38148 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -69 Cycle Base Deletion 38148 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Substitution 39087 65.08 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Insertion 39087 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -7 Cycle Base Deletion 39087 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Substitution 38231 63.16 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Insertion 38115 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -70 Cycle Base Deletion 38115 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Substitution 38192 64.85 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Insertion 38065 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -71 Cycle Base Deletion 38065 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Substitution 38187 73.72 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Insertion 38053 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -72 Cycle Base Deletion 38053 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Substitution 38176 63.78 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Insertion 38050 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -73 Cycle Base Deletion 38050 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Substitution 37978 64.62 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Insertion 37849 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -74 Cycle Base Deletion 37849 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Substitution 38026 62.45 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Insertion 37881 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -75 Cycle Base Deletion 37881 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Substitution 37913 74.90 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Insertion 37778 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -76 Cycle Base Deletion 37778 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Substitution 37965 64.33 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Insertion 37813 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -77 Cycle Base Deletion 37813 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Substitution 38012 75.20 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Insertion 37843 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -78 Cycle Base Deletion 37843 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Substitution 37951 74.54 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Insertion 37777 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -79 Cycle Base Deletion 37777 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Substitution 39012 60.37 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Insertion 39012 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -8 Cycle Base Deletion 39012 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Substitution 37901 80.20 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Insertion 37707 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -80 Cycle Base Deletion 37707 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Substitution 37807 64.79 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Insertion 37602 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -81 Cycle Base Deletion 37602 4.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Substitution 37880 74.65 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Insertion 37667 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -82 Cycle Base Deletion 37667 5.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Substitution 37724 74.71 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Insertion 37511 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -83 Cycle Base Deletion 37511 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Substitution 37643 69.34 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Insertion 37428 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -84 Cycle Base Deletion 37428 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Substitution 37582 59.70 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Insertion 37358 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -85 Cycle Base Deletion 37358 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Substitution 37549 79.72 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Insertion 37323 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -86 Cycle Base Deletion 37323 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Substitution 37581 55.45 28.00 26.63 1.37 After
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Insertion 37334 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -87 Cycle Base Deletion 37334 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Substitution 37557 69.39 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Insertion 37310 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -88 Cycle Base Deletion 37310 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Substitution 37421 71.52 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Insertion 37167 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -89 Cycle Base Deletion 37167 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Substitution 39094 42.54 29.00 27.75 1.25 After
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Insertion 39094 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -9 Cycle Base Deletion 39094 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Substitution 37178 88.61 26.00 25.69 0.31 After
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Insertion 36925 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -90 Cycle Base Deletion 36925 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Substitution 37377 63.42 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Insertion 37126 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -91 Cycle Base Deletion 37126 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Substitution 37326 88.56 26.00 25.97 0.03 After
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Insertion 37084 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -92 Cycle Base Deletion 37084 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Substitution 37127 76.77 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Insertion 36877 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -93 Cycle Base Deletion 36877 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Substitution 37083 91.36 26.00 25.75 0.25 After
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Insertion 36820 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -94 Cycle Base Deletion 36820 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Substitution 36936 72.03 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Insertion 36674 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -95 Cycle Base Deletion 36674 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Substitution 36942 62.66 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Insertion 36666 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -96 Cycle Base Deletion 36666 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Substitution 36815 68.53 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Insertion 36543 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -97 Cycle Base Deletion 36543 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Substitution 36765 80.73 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Insertion 36467 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -98 Cycle Base Deletion 36467 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Substitution 36662 82.36 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Insertion 36359 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 -99 Cycle Base Deletion 36359 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 1 Cycle Base Substitution 38815 77.46 27.00 25.84 1.16 After
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Substitution 39177 55.68 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Insertion 39177 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 10 Cycle Base Deletion 39177 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Substitution 36661 74.79 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Insertion 36356 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 100 Cycle Base Deletion 36356 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Substitution 36540 80.21 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Insertion 36220 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 101 Cycle Base Deletion 36220 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Substitution 36636 82.12 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Insertion 36334 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 102 Cycle Base Deletion 36334 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Substitution 36451 59.98 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Insertion 36127 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 103 Cycle Base Deletion 36127 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Substitution 36368 69.27 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Insertion 36031 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 104 Cycle Base Deletion 36031 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Substitution 36327 53.98 28.00 26.47 1.53 After
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Insertion 36009 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 105 Cycle Base Deletion 36009 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Substitution 36224 71.38 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Insertion 35903 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 106 Cycle Base Deletion 35903 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Substitution 36194 67.32 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Insertion 35900 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 107 Cycle Base Deletion 35900 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Substitution 35993 90.18 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Insertion 35704 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 108 Cycle Base Deletion 35704 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Substitution 35988 76.02 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Insertion 35678 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 109 Cycle Base Deletion 35678 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Substitution 39099 40.46 29.00 27.48 1.52 After
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Insertion 39099 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 11 Cycle Base Deletion 39099 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Substitution 35907 72.12 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Insertion 35590 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 110 Cycle Base Deletion 35590 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Substitution 35882 75.86 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Insertion 35570 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 111 Cycle Base Deletion 35570 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Substitution 35690 77.38 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Insertion 35388 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 112 Cycle Base Deletion 35388 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Substitution 35567 67.86 27.00 27.00 -0.00 After
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Insertion 35277 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 113 Cycle Base Deletion 35277 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Substitution 35668 80.43 26.00 26.65 -0.65 After
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Insertion 35355 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 114 Cycle Base Deletion 35355 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Substitution 35416 75.90 27.00 26.35 0.65 After
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Insertion 35095 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 115 Cycle Base Deletion 35095 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Substitution 35305 75.50 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Insertion 34949 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 116 Cycle Base Deletion 34949 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Substitution 35341 81.33 26.00 25.76 0.24 After
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Insertion 34973 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 117 Cycle Base Deletion 34973 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Substitution 35261 71.81 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Insertion 34885 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 118 Cycle Base Deletion 34885 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Substitution 35148 65.53 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Insertion 34781 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 119 Cycle Base Deletion 34781 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Substitution 39041 42.48 29.00 27.51 1.49 After
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Insertion 39041 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 12 Cycle Base Deletion 39041 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Substitution 35049 71.55 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Insertion 34694 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 120 Cycle Base Deletion 34694 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Substitution 35010 88.61 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Insertion 34673 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 121 Cycle Base Deletion 34673 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Substitution 34810 69.22 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Insertion 34452 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 122 Cycle Base Deletion 34452 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Substitution 34925 68.30 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Insertion 34584 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 123 Cycle Base Deletion 34584 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Substitution 34805 82.16 26.00 25.88 0.12 After
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Insertion 34450 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 124 Cycle Base Deletion 34450 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Substitution 34590 83.12 26.00 26.23 -0.23 After
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Insertion 34228 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 125 Cycle Base Deletion 34228 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Substitution 34543 76.37 27.00 26.28 0.72 After
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Insertion 34198 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 126 Cycle Base Deletion 34198 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Substitution 34481 61.12 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Insertion 34112 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 127 Cycle Base Deletion 34112 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Substitution 34264 73.61 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Insertion 33884 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 128 Cycle Base Deletion 33884 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Substitution 34299 64.31 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Insertion 33924 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 129 Cycle Base Deletion 33924 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Substitution 39116 43.51 29.00 27.87 1.13 After
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Insertion 39116 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 13 Cycle Base Deletion 39116 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Substitution 34266 70.66 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Insertion 33923 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 130 Cycle Base Deletion 33923 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Substitution 34126 84.89 26.00 25.68 0.32 After
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Insertion 33758 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 131 Cycle Base Deletion 33758 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Substitution 33992 80.64 26.00 25.79 0.21 After
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Insertion 33620 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 132 Cycle Base Deletion 33620 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Substitution 33953 78.79 26.00 25.82 0.18 After
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Insertion 33554 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 133 Cycle Base Deletion 33554 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Substitution 33992 67.99 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Insertion 33574 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 134 Cycle Base Deletion 33574 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Substitution 33728 80.26 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Insertion 33314 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 135 Cycle Base Deletion 33314 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Substitution 33697 62.48 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Insertion 33289 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 136 Cycle Base Deletion 33289 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Substitution 33575 80.88 26.00 26.23 -0.23 After
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Insertion 33147 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 137 Cycle Base Deletion 33147 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Substitution 33460 82.52 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Insertion 33056 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 138 Cycle Base Deletion 33056 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Substitution 33457 103.04 25.00 25.45 -0.45 After
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Insertion 33022 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 139 Cycle Base Deletion 33022 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Substitution 39062 39.08 29.00 27.38 1.62 After
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Insertion 39062 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 14 Cycle Base Deletion 39062 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Substitution 33244 70.05 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Insertion 32826 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 140 Cycle Base Deletion 32826 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Substitution 33120 74.43 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Insertion 32703 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 141 Cycle Base Deletion 32703 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Substitution 33037 84.51 26.00 25.72 0.28 After
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Insertion 32537 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 142 Cycle Base Deletion 32537 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Substitution 32872 75.85 26.00 26.29 -0.29 After
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Insertion 32363 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 143 Cycle Base Deletion 32363 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Substitution 32824 82.14 26.00 26.25 -0.25 After
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Insertion 32300 0.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 144 Cycle Base Deletion 32300 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Substitution 32636 72.54 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Insertion 32122 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 145 Cycle Base Deletion 32122 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Substitution 32492 71.53 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Insertion 32039 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 146 Cycle Base Deletion 32039 0.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 147 Cycle Base Substitution 32478 77.27 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L002 148 Cycle Base Substitution 32379 107.22 25.00 26.36 -1.36 After
REGRESSION.HCC1395_tumor.L002 149 Cycle Base Substitution 32231 86.40 26.00 26.24 -0.24 After
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Substitution 39074 37.98 29.00 27.84 1.16 After
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Insertion 39074 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 15 Cycle Base Deletion 39074 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 150 Cycle Base Substitution 32055 73.85 26.00 26.43 -0.43 After
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Substitution 38984 32.03 30.00 28.60 1.40 After
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Insertion 38984 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 16 Cycle Base Deletion 38984 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Substitution 39013 34.73 29.00 28.31 0.69 After
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Insertion 39013 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 17 Cycle Base Deletion 39013 4.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Substitution 39228 23.93 30.00 28.57 1.43 After
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Insertion 39227 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 18 Cycle Base Deletion 39227 5.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Substitution 38856 33.18 30.00 28.65 1.35 After
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Insertion 38855 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 19 Cycle Base Deletion 38855 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 2 Cycle Base Substitution 39289 90.17 26.00 26.97 -0.97 After
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Substitution 38946 31.18 30.00 28.39 1.61 After
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Insertion 38945 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 20 Cycle Base Deletion 38945 4.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Substitution 39013 37.24 29.00 28.47 0.53 After
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Insertion 39012 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 21 Cycle Base Deletion 39012 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Substitution 38968 33.13 30.00 28.77 1.23 After
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Insertion 38968 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 22 Cycle Base Deletion 38968 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Substitution 39036 24.01 30.00 28.47 1.53 After
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Insertion 39036 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 23 Cycle Base Deletion 39036 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Substitution 38904 28.05 30.00 28.60 1.40 After
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Insertion 38904 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 24 Cycle Base Deletion 38904 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Substitution 38908 32.84 30.00 28.61 1.39 After
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Insertion 38908 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 25 Cycle Base Deletion 38908 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Substitution 39023 41.19 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Insertion 39023 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 26 Cycle Base Deletion 39023 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Substitution 39005 38.63 29.00 27.60 1.40 After
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Insertion 39005 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 27 Cycle Base Deletion 39005 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Substitution 38899 43.39 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Insertion 38899 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 28 Cycle Base Deletion 38899 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Substitution 38874 40.14 29.00 28.07 0.93 After
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Insertion 38873 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 29 Cycle Base Deletion 38873 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 3 Cycle Base Substitution 39495 107.25 26.00 26.84 -0.84 After
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Substitution 38890 36.52 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Insertion 38888 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 30 Cycle Base Deletion 38888 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Substitution 38959 35.64 29.00 27.81 1.19 After
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Insertion 38957 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 31 Cycle Base Deletion 38957 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Substitution 38951 61.88 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Insertion 38948 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 32 Cycle Base Deletion 38948 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Substitution 38991 40.14 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Insertion 38987 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 33 Cycle Base Deletion 38987 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Substitution 38980 46.85 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Insertion 38977 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 34 Cycle Base Deletion 38977 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Substitution 38947 49.65 28.00 27.58 0.42 After
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Insertion 38945 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 35 Cycle Base Deletion 38945 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Substitution 38775 59.12 28.00 27.85 0.15 After
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Insertion 38772 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 36 Cycle Base Deletion 38772 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Substitution 38932 45.79 29.00 28.45 0.55 After
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Insertion 38930 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 37 Cycle Base Deletion 38930 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Substitution 38813 34.15 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Insertion 38811 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 38 Cycle Base Deletion 38811 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Substitution 38868 44.61 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Insertion 38866 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 39 Cycle Base Deletion 38866 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 4 Cycle Base Substitution 39265 61.07 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Substitution 38967 44.31 29.00 27.84 1.16 After
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Insertion 38964 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 40 Cycle Base Deletion 38964 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Substitution 38815 57.90 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Insertion 38812 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 41 Cycle Base Deletion 38812 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Substitution 38901 33.05 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Insertion 38897 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 42 Cycle Base Deletion 38897 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Substitution 38665 51.12 28.00 27.58 0.42 After
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Insertion 38657 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 43 Cycle Base Deletion 38657 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Substitution 38833 43.33 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Insertion 38823 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 44 Cycle Base Deletion 38823 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Substitution 38832 51.14 28.00 27.59 0.41 After
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Insertion 38819 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 45 Cycle Base Deletion 38819 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Substitution 38916 38.06 29.00 27.52 1.48 After
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Insertion 38903 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 46 Cycle Base Deletion 38903 5.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Substitution 38814 56.04 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Insertion 38803 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 47 Cycle Base Deletion 38803 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Substitution 38694 40.08 29.00 27.61 1.39 After
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Insertion 38681 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 48 Cycle Base Deletion 38681 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Substitution 38643 39.53 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Insertion 38623 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 49 Cycle Base Deletion 38623 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Substitution 39350 42.39 29.00 27.63 1.37 After
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Insertion 39350 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 5 Cycle Base Deletion 39350 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Substitution 38705 45.80 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Insertion 38682 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 50 Cycle Base Deletion 38682 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Substitution 38732 56.22 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Insertion 38701 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 51 Cycle Base Deletion 38701 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Substitution 38675 52.49 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Insertion 38645 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 52 Cycle Base Deletion 38645 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Substitution 38763 55.39 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Insertion 38728 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 53 Cycle Base Deletion 38728 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Substitution 38814 61.08 28.00 27.88 0.12 After
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Insertion 38783 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 54 Cycle Base Deletion 38783 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Substitution 38652 44.48 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Insertion 38617 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 55 Cycle Base Deletion 38617 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Substitution 38556 51.83 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Insertion 38520 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 56 Cycle Base Deletion 38520 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Substitution 38491 61.25 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Insertion 38443 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 57 Cycle Base Deletion 38443 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Substitution 38602 42.44 29.00 27.43 1.57 After
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Insertion 38537 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 58 Cycle Base Deletion 38537 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Substitution 38551 42.49 29.00 27.49 1.51 After
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Insertion 38485 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 59 Cycle Base Deletion 38485 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Substitution 39220 44.95 29.00 28.11 0.89 After
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Insertion 39220 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 6 Cycle Base Deletion 39220 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Substitution 38575 42.17 29.00 27.80 1.20 After
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Insertion 38502 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 60 Cycle Base Deletion 38502 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Substitution 38471 47.14 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Insertion 38393 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 61 Cycle Base Deletion 38393 5.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Substitution 38399 42.32 29.00 27.37 1.63 After
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Insertion 38320 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 62 Cycle Base Deletion 38320 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Substitution 38467 60.87 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Insertion 38395 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 63 Cycle Base Deletion 38395 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Substitution 38460 57.17 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Insertion 38382 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 64 Cycle Base Deletion 38382 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Substitution 38434 47.93 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Insertion 38341 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 65 Cycle Base Deletion 38341 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Substitution 38465 42.27 29.00 27.43 1.57 After
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Insertion 38374 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 66 Cycle Base Deletion 38374 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Substitution 38426 52.96 28.00 27.33 0.67 After
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Insertion 38326 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 67 Cycle Base Deletion 38326 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Substitution 38344 60.14 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Insertion 38236 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 68 Cycle Base Deletion 38236 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Substitution 38281 46.91 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Insertion 38172 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 69 Cycle Base Deletion 38172 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Substitution 39179 48.16 28.00 27.28 0.72 After
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Insertion 39179 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 7 Cycle Base Deletion 39179 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Substitution 38379 49.53 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Insertion 38274 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 70 Cycle Base Deletion 38274 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Substitution 38300 59.44 28.00 27.35 0.65 After
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Insertion 38181 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 71 Cycle Base Deletion 38181 5.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Substitution 38263 57.97 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Insertion 38135 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 72 Cycle Base Deletion 38135 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Substitution 38276 67.63 27.00 27.12 -0.12 After
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Insertion 38148 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 73 Cycle Base Deletion 38148 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Substitution 38145 69.05 27.00 27.08 -0.08 After
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Insertion 38011 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 74 Cycle Base Deletion 38011 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Substitution 38193 51.28 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Insertion 38041 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 75 Cycle Base Deletion 38041 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Substitution 38125 55.18 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Insertion 37989 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 76 Cycle Base Deletion 37989 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Substitution 37981 71.64 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Insertion 37829 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 77 Cycle Base Deletion 37829 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Substitution 37966 61.14 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Insertion 37796 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 78 Cycle Base Deletion 37796 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Substitution 37956 62.68 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Insertion 37782 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 79 Cycle Base Deletion 37782 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Substitution 39201 35.00 29.00 28.06 0.94 After
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Insertion 39201 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 8 Cycle Base Deletion 39201 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Substitution 37844 63.53 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Insertion 37651 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 80 Cycle Base Deletion 37651 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Substitution 37842 63.51 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Insertion 37629 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 81 Cycle Base Deletion 37629 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Substitution 37734 66.76 27.00 27.10 -0.10 After
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Insertion 37533 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 82 Cycle Base Deletion 37533 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Substitution 37713 51.41 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Insertion 37506 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 83 Cycle Base Deletion 37506 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Substitution 37730 57.83 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Insertion 37530 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 84 Cycle Base Deletion 37530 4.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Substitution 37618 66.93 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Insertion 37400 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 85 Cycle Base Deletion 37400 5.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Substitution 37575 66.84 27.00 27.04 -0.04 After
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Insertion 37351 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 86 Cycle Base Deletion 37351 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Substitution 37665 64.11 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Insertion 37429 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 87 Cycle Base Deletion 37429 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Substitution 37466 52.64 28.00 26.96 1.04 After
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Insertion 37221 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 88 Cycle Base Deletion 37221 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Substitution 37392 62.47 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Insertion 37142 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 89 Cycle Base Deletion 37142 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Substitution 39090 30.22 30.00 28.07 1.93 After
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Insertion 39090 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 9 Cycle Base Deletion 39090 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Substitution 37365 63.32 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Insertion 37113 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 90 Cycle Base Deletion 37113 5.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Substitution 37201 68.14 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Insertion 36965 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 91 Cycle Base Deletion 36965 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Substitution 37190 63.45 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Insertion 36959 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 92 Cycle Base Deletion 36959 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Substitution 37243 72.54 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Insertion 36995 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 93 Cycle Base Deletion 36995 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Substitution 37134 78.48 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Insertion 36886 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 94 Cycle Base Deletion 36886 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Substitution 37026 59.06 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Insertion 36781 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 95 Cycle Base Deletion 36781 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Substitution 36990 67.44 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Insertion 36713 2.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 96 Cycle Base Deletion 36713 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Substitution 36912 58.18 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Insertion 36647 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 97 Cycle Base Deletion 36647 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Substitution 36805 59.92 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Insertion 36516 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 98 Cycle Base Deletion 36516 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Substitution 36682 64.18 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Insertion 36382 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 99 Cycle Base Deletion 36382 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L002 10 QualityScore Base Substitution 15306 1511.30 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L002 11 QualityScore Base Substitution 15573 1124.36 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L002 12 QualityScore Base Substitution 20817 1230.85 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L002 13 QualityScore Base Substitution 7139 77.60 17.00 13.00 4.00 After
REGRESSION.HCC1395_tumor.L002 14 QualityScore Base Substitution 24967 351.16 18.00 14.00 4.00 After
REGRESSION.HCC1395_tumor.L002 15 QualityScore Base Substitution 17794 13.85 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L002 16 QualityScore Base Substitution 14570 3.91 22.00 16.00 6.00 After
REGRESSION.HCC1395_tumor.L002 22 QualityScore Base Substitution 8133 2.18 24.00 22.00 2.00 After
REGRESSION.HCC1395_tumor.L002 23 QualityScore Base Substitution 101482 666.03 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 24 QualityScore Base Substitution 109311 391.31 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L002 25 QualityScore Base Substitution 128536 206.44 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L002 28 QualityScore Base Substitution 7918 0.09 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L002 29 QualityScore Base Substitution 68730 117.35 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L002 30 QualityScore Base Substitution 2534675 1558.92 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L002 31 QualityScore Base Substitution 2886781 1285.60 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L002 32 QualityScore Base Substitution 4702203 1104.60 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L002 33 QualityScore Base Substitution 363816 73.89 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L002 45 QualityScore Base Insertion 11095310 525.37 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L002 45 QualityScore Base Deletion 11095310 990.65 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L002 7 QualityScore Base Substitution 561 124.05 7.00 7.00 0.00 After
REGRESSION.HCC1395_tumor.L002 8 QualityScore Base Substitution 11595 1960.35 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L002 9 QualityScore Base Substitution 55403 7343.49 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AA Context Base Substitution 832466 1887.02 26.00 24.93 1.07 After
REGRESSION.HCC1395_tumor.L003 AAA Context Base Insertion 295262 62.17 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L003 AAA Context Base Deletion 295262 186.72 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L003 AAC Context Base Insertion 131758 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAC Context Base Deletion 131758 9.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAG Context Base Insertion 198579 7.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAG Context Base Deletion 198579 7.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAT Context Base Insertion 172697 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AAT Context Base Deletion 172697 14.89 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 AC Context Base Substitution 531295 1815.79 25.00 24.73 0.27 After
REGRESSION.HCC1395_tumor.L003 ACA Context Base Insertion 204844 16.98 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 ACA Context Base Deletion 204844 36.76 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L003 ACC Context Base Insertion 146522 10.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACC Context Base Deletion 146522 5.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACG Context Base Insertion 30812 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACG Context Base Deletion 30812 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACT Context Base Insertion 157740 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ACT Context Base Deletion 157740 11.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AG Context Base Substitution 800896 623.03 31.00 28.67 2.33 After
REGRESSION.HCC1395_tumor.L003 AGA Context Base Insertion 222133 5.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGA Context Base Deletion 222133 11.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGC Context Base Insertion 192877 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGC Context Base Deletion 192877 5.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGG Context Base Insertion 228059 12.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGG Context Base Deletion 228059 9.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGT Context Base Insertion 154289 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AGT Context Base Deletion 154289 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 AT Context Base Substitution 601180 626.27 30.00 27.54 2.46 After
REGRESSION.HCC1395_tumor.L003 ATA Context Base Insertion 134641 8.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATA Context Base Deletion 134641 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATC Context Base Insertion 120773 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATC Context Base Deletion 120773 8.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATG Context Base Insertion 174278 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATG Context Base Deletion 174278 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATT Context Base Insertion 181859 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 ATT Context Base Deletion 181859 9.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CA Context Base Substitution 855769 1832.72 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L003 CAA Context Base Insertion 171094 8.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAA Context Base Deletion 171094 12.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAC Context Base Insertion 184045 21.60 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 CAC Context Base Deletion 184045 35.79 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L003 CAG Context Base Insertion 292196 9.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAG Context Base Deletion 292196 11.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAT Context Base Insertion 170487 7.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CAT Context Base Deletion 170487 7.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CC Context Base Substitution 765238 2441.09 25.00 24.57 0.43 After
REGRESSION.HCC1395_tumor.L003 CCA Context Base Insertion 244978 7.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCA Context Base Deletion 244978 8.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCC Context Base Insertion 212410 14.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCC Context Base Deletion 212410 18.73 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 CCG Context Base Insertion 54106 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCG Context Base Deletion 54106 6.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCT Context Base Insertion 243293 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CCT Context Base Deletion 243293 11.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CG Context Base Substitution 161851 515.61 25.00 24.72 0.28 After
REGRESSION.HCC1395_tumor.L003 CGA Context Base Insertion 56555 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGA Context Base Deletion 56555 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGC Context Base Insertion 80571 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGC Context Base Deletion 80571 5.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGG Context Base Insertion 98804 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGG Context Base Deletion 98804 11.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGT Context Base Insertion 62627 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CGT Context Base Deletion 62627 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CT Context Base Substitution 840373 367.87 33.00 29.56 3.44 After
REGRESSION.HCC1395_tumor.L003 CTA Context Base Insertion 97015 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTA Context Base Deletion 97015 7.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTC Context Base Insertion 202175 8.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTC Context Base Deletion 202175 17.84 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 CTG Context Base Insertion 292221 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTG Context Base Deletion 292221 14.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTT Context Base Insertion 210542 10.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 CTT Context Base Deletion 210542 9.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GA Context Base Substitution 701190 998.52 28.00 26.53 1.47 After
REGRESSION.HCC1395_tumor.L003 GAA Context Base Insertion 209083 6.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAA Context Base Deletion 209083 9.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAC Context Base Insertion 118064 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAC Context Base Deletion 118064 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAG Context Base Insertion 206883 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAG Context Base Deletion 206883 12.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAT Context Base Insertion 125292 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GAT Context Base Deletion 125292 5.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GC Context Base Substitution 664144 1474.41 27.00 25.90 1.10 After
REGRESSION.HCC1395_tumor.L003 GCA Context Base Insertion 204348 5.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCA Context Base Deletion 204348 7.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCC Context Base Insertion 199574 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCC Context Base Deletion 199574 9.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCG Context Base Insertion 49272 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCG Context Base Deletion 49272 7.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCT Context Base Insertion 210004 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GCT Context Base Deletion 210004 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GG Context Base Substitution 792507 772.70 30.00 27.63 2.37 After
REGRESSION.HCC1395_tumor.L003 GGA Context Base Insertion 214311 22.99 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 GGA Context Base Deletion 214311 14.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGC Context Base Insertion 197489 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGC Context Base Deletion 197489 9.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGG Context Base Insertion 219327 14.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGG Context Base Deletion 219327 33.87 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 GGT Context Base Insertion 158732 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GGT Context Base Deletion 158732 5.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GT Context Base Substitution 589594 1073.05 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L003 GTA Context Base Insertion 102007 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTA Context Base Deletion 102007 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTC Context Base Insertion 126585 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTC Context Base Deletion 126585 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTG Context Base Insertion 199413 12.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTG Context Base Deletion 199413 34.02 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L003 GTT Context Base Insertion 149030 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 GTT Context Base Deletion 149030 14.77 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 TA Context Base Substitution 485042 1178.89 26.00 25.02 0.98 After
REGRESSION.HCC1395_tumor.L003 TAA Context Base Insertion 149908 9.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAA Context Base Deletion 149908 14.46 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 TAC Context Base Insertion 94087 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAC Context Base Deletion 94087 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAG Context Base Insertion 97163 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAG Context Base Deletion 97163 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAT Context Base Insertion 128294 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TAT Context Base Deletion 128294 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TC Context Base Substitution 647389 1619.43 26.00 26.09 -0.09 After
REGRESSION.HCC1395_tumor.L003 TCA Context Base Insertion 194966 6.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCA Context Base Deletion 194966 13.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCC Context Base Insertion 201604 32.38 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 TCC Context Base Deletion 201604 11.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCG Context Base Insertion 26440 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCG Context Base Deletion 26440 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCT Context Base Insertion 223586 5.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TCT Context Base Deletion 223586 13.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TG Context Base Substitution 842442 365.69 33.00 29.35 3.65 After
REGRESSION.HCC1395_tumor.L003 TGA Context Base Insertion 202770 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGA Context Base Deletion 202770 6.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGC Context Base Insertion 189022 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGC Context Base Deletion 189022 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGG Context Base Insertion 240584 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGG Context Base Deletion 240584 8.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGT Context Base Insertion 210064 13.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TGT Context Base Deletion 210064 36.97 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L003 TT Context Base Substitution 842266 924.15 30.00 28.18 1.82 After
REGRESSION.HCC1395_tumor.L003 TTA Context Base Insertion 147755 5.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTA Context Base Deletion 147755 7.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTC Context Base Insertion 193943 6.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTC Context Base Deletion 193943 12.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTG Context Base Insertion 170543 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTG Context Base Deletion 170543 9.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 TTT Context Base Insertion 295151 63.00 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L003 TTT Context Base Deletion 295151 166.30 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L003 -1 Cycle Base Substitution 38500 137.75 24.00 24.14 -0.14 After
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Substitution 38750 50.24 28.00 27.58 0.42 After
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Insertion 38750 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -10 Cycle Base Deletion 38750 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Substitution 36396 90.84 26.00 26.03 -0.03 After
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Insertion 36096 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -100 Cycle Base Deletion 36096 5.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Substitution 36375 96.97 26.00 25.62 0.38 After
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Insertion 36067 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -101 Cycle Base Deletion 36067 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Substitution 36211 78.77 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Insertion 35910 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -102 Cycle Base Deletion 35910 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Substitution 36192 68.28 27.00 26.35 0.65 After
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Insertion 35884 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -103 Cycle Base Deletion 35884 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Substitution 36063 73.00 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Insertion 35760 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -104 Cycle Base Deletion 35760 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Substitution 35932 91.70 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Insertion 35608 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -105 Cycle Base Deletion 35608 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Substitution 35889 93.67 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Insertion 35566 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -106 Cycle Base Deletion 35566 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Substitution 35858 79.65 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Insertion 35539 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -107 Cycle Base Deletion 35539 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Substitution 35788 79.69 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Insertion 35456 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -108 Cycle Base Deletion 35456 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Substitution 35762 86.40 26.00 25.72 0.28 After
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Insertion 35431 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -109 Cycle Base Deletion 35431 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Substitution 38857 40.73 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Insertion 38857 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -11 Cycle Base Deletion 38857 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Substitution 35649 95.04 26.00 25.64 0.36 After
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Insertion 35320 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -110 Cycle Base Deletion 35320 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Substitution 35484 89.10 26.00 25.73 0.27 After
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Insertion 35158 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -111 Cycle Base Deletion 35158 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Substitution 35435 76.40 27.00 26.21 0.79 After
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Insertion 35109 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -112 Cycle Base Deletion 35109 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Substitution 35394 82.05 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Insertion 35062 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -113 Cycle Base Deletion 35062 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Substitution 35295 88.36 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Insertion 34966 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -114 Cycle Base Deletion 34966 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Substitution 35085 87.12 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Insertion 34729 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -115 Cycle Base Deletion 34729 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Substitution 35133 84.68 26.00 25.57 0.43 After
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Insertion 34787 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -116 Cycle Base Deletion 34787 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Substitution 34865 96.47 26.00 26.14 -0.14 After
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Insertion 34515 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -117 Cycle Base Deletion 34515 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Substitution 34798 77.21 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Insertion 34437 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -118 Cycle Base Deletion 34437 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Substitution 34746 87.10 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Insertion 34394 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -119 Cycle Base Deletion 34394 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Substitution 38939 61.86 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Insertion 38939 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -12 Cycle Base Deletion 38939 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Substitution 34756 79.88 26.00 26.30 -0.30 After
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Insertion 34412 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -120 Cycle Base Deletion 34412 4.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Substitution 34717 79.63 26.00 26.13 -0.13 After
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Insertion 34352 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -121 Cycle Base Deletion 34352 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Substitution 34613 98.03 26.00 26.24 -0.24 After
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Insertion 34250 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -122 Cycle Base Deletion 34250 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Substitution 34371 67.31 27.00 25.99 1.01 After
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Insertion 33999 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -123 Cycle Base Deletion 33999 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Substitution 34238 81.20 26.00 26.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Insertion 33857 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -124 Cycle Base Deletion 33857 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Substitution 34383 79.06 26.00 26.04 -0.04 After
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Insertion 33989 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -125 Cycle Base Deletion 33989 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Substitution 34273 71.53 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Insertion 33868 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -126 Cycle Base Deletion 33868 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Substitution 34172 54.31 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Insertion 33773 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -127 Cycle Base Deletion 33773 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Substitution 34027 89.36 26.00 25.55 0.45 After
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Insertion 33632 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -128 Cycle Base Deletion 33632 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Substitution 33934 87.70 26.00 26.02 -0.02 After
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Insertion 33536 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -129 Cycle Base Deletion 33536 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Substitution 38904 44.66 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Insertion 38904 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -13 Cycle Base Deletion 38904 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Substitution 33900 74.27 27.00 26.17 0.83 After
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Insertion 33506 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -130 Cycle Base Deletion 33506 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Substitution 33673 74.23 26.00 25.92 0.08 After
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Insertion 33291 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -131 Cycle Base Deletion 33291 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Substitution 33753 71.26 27.00 26.18 0.82 After
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Insertion 33331 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -132 Cycle Base Deletion 33331 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Substitution 33587 94.71 26.00 26.05 -0.05 After
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Insertion 33149 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -133 Cycle Base Deletion 33149 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Substitution 33420 69.57 27.00 26.22 0.78 After
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Insertion 32981 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -134 Cycle Base Deletion 32981 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Substitution 33336 87.16 26.00 25.64 0.36 After
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Insertion 32904 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -135 Cycle Base Deletion 32904 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Substitution 33308 73.87 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Insertion 32844 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -136 Cycle Base Deletion 32844 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Substitution 33172 93.51 25.00 25.61 -0.61 After
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Insertion 32709 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -137 Cycle Base Deletion 32709 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Substitution 33052 70.70 27.00 26.16 0.84 After
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Insertion 32564 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -138 Cycle Base Deletion 32564 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Substitution 32859 61.64 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Insertion 32346 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -139 Cycle Base Deletion 32346 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Substitution 38867 47.69 28.00 27.74 0.26 After
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Insertion 38867 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -14 Cycle Base Deletion 38867 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Substitution 32784 67.77 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Insertion 32280 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -140 Cycle Base Deletion 32280 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Substitution 32649 68.20 27.00 26.17 0.83 After
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Insertion 32100 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -141 Cycle Base Deletion 32100 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Substitution 32561 54.85 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Insertion 31964 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -142 Cycle Base Deletion 31964 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Substitution 32550 60.70 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Insertion 31895 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -143 Cycle Base Deletion 31895 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Substitution 32266 51.03 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Insertion 31543 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -144 Cycle Base Deletion 31543 0.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Substitution 32084 45.63 28.00 26.25 1.75 After
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Insertion 24853 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -145 Cycle Base Deletion 24853 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Substitution 31946 28.13 28.00 26.07 1.93 After
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Insertion 24777 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -146 Cycle Base Deletion 24777 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -147 Cycle Base Substitution 31766 16.77 26.00 22.36 3.64 After
REGRESSION.HCC1395_tumor.L003 -148 Cycle Base Substitution 31548 29.90 23.00 15.12 7.88 After
REGRESSION.HCC1395_tumor.L003 -149 Cycle Base Substitution 19703 26.57 21.00 14.16 6.84 After
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Substitution 38949 59.96 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Insertion 38949 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -15 Cycle Base Deletion 38949 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -150 Cycle Base Substitution 6932 18.78 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Substitution 38845 56.01 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Insertion 38845 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -16 Cycle Base Deletion 38845 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Substitution 38985 57.48 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Insertion 38985 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -17 Cycle Base Deletion 38985 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Substitution 38852 65.63 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Insertion 38852 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -18 Cycle Base Deletion 38852 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Substitution 38806 64.44 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Insertion 38806 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -19 Cycle Base Deletion 38806 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -2 Cycle Base Substitution 39092 130.54 25.00 25.60 -0.60 After
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Substitution 38881 62.92 28.00 27.59 0.41 After
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Insertion 38880 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -20 Cycle Base Deletion 38880 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Substitution 38789 43.91 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Insertion 38789 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -21 Cycle Base Deletion 38789 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Substitution 38801 56.56 28.00 27.74 0.26 After
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Insertion 38801 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -22 Cycle Base Deletion 38801 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Substitution 38896 43.55 29.00 27.63 1.37 After
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Insertion 38896 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -23 Cycle Base Deletion 38896 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Substitution 38908 49.73 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Insertion 38908 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -24 Cycle Base Deletion 38908 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Substitution 38832 46.64 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Insertion 38832 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -25 Cycle Base Deletion 38832 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Substitution 38705 60.84 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Insertion 38705 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -26 Cycle Base Deletion 38705 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Substitution 38701 49.61 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Insertion 38698 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -27 Cycle Base Deletion 38698 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Substitution 38703 81.75 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Insertion 38701 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -28 Cycle Base Deletion 38701 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Substitution 38674 63.18 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Insertion 38670 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -29 Cycle Base Deletion 38670 5.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -3 Cycle Base Substitution 39055 134.46 25.00 26.48 -1.48 After
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Substitution 38679 58.61 28.00 26.61 1.39 After
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Insertion 38672 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -30 Cycle Base Deletion 38672 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Substitution 38741 64.92 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Insertion 38735 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -31 Cycle Base Deletion 38735 5.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Substitution 38791 52.69 28.00 26.54 1.46 After
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Insertion 38783 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -32 Cycle Base Deletion 38783 5.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Substitution 38666 50.16 28.00 26.93 1.07 After
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Insertion 38659 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -33 Cycle Base Deletion 38659 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Substitution 38585 45.14 28.00 26.73 1.27 After
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Insertion 38583 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -34 Cycle Base Deletion 38583 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Substitution 38683 53.05 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Insertion 38680 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -35 Cycle Base Deletion 38680 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Substitution 38677 57.31 28.00 26.63 1.37 After
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Insertion 38674 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -36 Cycle Base Deletion 38674 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Substitution 38503 66.50 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Insertion 38501 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -37 Cycle Base Deletion 38501 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Substitution 38682 62.32 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Insertion 38680 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -38 Cycle Base Deletion 38680 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Substitution 38602 53.91 28.00 26.61 1.39 After
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Insertion 38598 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -39 Cycle Base Deletion 38598 4.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -4 Cycle Base Substitution 38918 84.13 27.00 26.18 0.82 After
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Substitution 38669 68.36 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Insertion 38666 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -40 Cycle Base Deletion 38666 5.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Substitution 38475 60.51 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Insertion 38472 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -41 Cycle Base Deletion 38472 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Substitution 38391 36.59 29.00 27.57 1.43 After
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Insertion 38386 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -42 Cycle Base Deletion 38386 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Substitution 38606 58.84 28.00 26.73 1.27 After
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Insertion 38601 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -43 Cycle Base Deletion 38601 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Substitution 38554 49.24 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Insertion 38550 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -44 Cycle Base Deletion 38550 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Substitution 38676 54.83 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Insertion 38670 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -45 Cycle Base Deletion 38670 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Substitution 38463 41.05 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Insertion 38458 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -46 Cycle Base Deletion 38458 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Substitution 38529 69.50 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Insertion 38523 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -47 Cycle Base Deletion 38523 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Substitution 38538 49.77 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Insertion 38529 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -48 Cycle Base Deletion 38529 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Substitution 38477 57.61 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Insertion 38463 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -49 Cycle Base Deletion 38463 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Substitution 39040 61.84 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Insertion 39040 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -5 Cycle Base Deletion 39040 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Substitution 38516 62.76 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Insertion 38504 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -50 Cycle Base Deletion 38504 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Substitution 38394 57.37 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Insertion 38372 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -51 Cycle Base Deletion 38372 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Substitution 38407 53.01 28.00 26.77 1.23 After
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Insertion 38384 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -52 Cycle Base Deletion 38384 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Substitution 38280 44.16 28.00 26.93 1.07 After
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Insertion 38254 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -53 Cycle Base Deletion 38254 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Substitution 38356 68.54 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Insertion 38322 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -54 Cycle Base Deletion 38322 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Substitution 38416 66.00 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Insertion 38380 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -55 Cycle Base Deletion 38380 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Substitution 38288 62.20 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Insertion 38248 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -56 Cycle Base Deletion 38248 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Substitution 38356 52.22 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Insertion 38305 2.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -57 Cycle Base Deletion 38305 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Substitution 38333 55.10 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Insertion 38278 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -58 Cycle Base Deletion 38278 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Substitution 38520 66.10 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Insertion 38459 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -59 Cycle Base Deletion 38459 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Substitution 38899 76.00 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Insertion 38899 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -6 Cycle Base Deletion 38899 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Substitution 38365 81.11 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Insertion 38303 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -60 Cycle Base Deletion 38303 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Substitution 38100 53.30 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Insertion 38037 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -61 Cycle Base Deletion 38037 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Substitution 38176 59.00 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Insertion 38110 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -62 Cycle Base Deletion 38110 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Substitution 38292 65.90 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Insertion 38219 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -63 Cycle Base Deletion 38219 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Substitution 38323 69.92 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Insertion 38243 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -64 Cycle Base Deletion 38243 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Substitution 38286 66.34 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Insertion 38191 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -65 Cycle Base Deletion 38191 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Substitution 38412 72.03 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Insertion 38314 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -66 Cycle Base Deletion 38314 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Substitution 38137 60.56 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Insertion 38046 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -67 Cycle Base Deletion 38046 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Substitution 38187 66.52 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Insertion 38085 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -68 Cycle Base Deletion 38085 4.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Substitution 38151 66.99 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Insertion 38045 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -69 Cycle Base Deletion 38045 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Substitution 38842 83.33 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Insertion 38842 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -7 Cycle Base Deletion 38842 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Substitution 38210 71.52 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Insertion 38100 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -70 Cycle Base Deletion 38100 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Substitution 38171 80.63 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Insertion 38038 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -71 Cycle Base Deletion 38038 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Substitution 38007 69.60 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Insertion 37866 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -72 Cycle Base Deletion 37866 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Substitution 37984 60.73 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Insertion 37832 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -73 Cycle Base Deletion 37832 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Substitution 38036 62.85 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Insertion 37872 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -74 Cycle Base Deletion 37872 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Substitution 37961 63.63 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Insertion 37794 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -75 Cycle Base Deletion 37794 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Substitution 37925 73.87 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Insertion 37747 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -76 Cycle Base Deletion 37747 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Substitution 37865 73.15 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Insertion 37688 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -77 Cycle Base Deletion 37688 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Substitution 37710 87.78 26.00 26.78 -0.78 After
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Insertion 37535 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -78 Cycle Base Deletion 37535 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Substitution 37726 75.87 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Insertion 37544 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -79 Cycle Base Deletion 37544 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Substitution 38967 66.61 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Insertion 38967 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -8 Cycle Base Deletion 38967 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Substitution 37623 67.25 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Insertion 37445 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -80 Cycle Base Deletion 37445 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Substitution 37701 72.20 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Insertion 37518 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -81 Cycle Base Deletion 37518 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Substitution 37568 74.03 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Insertion 37367 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -82 Cycle Base Deletion 37367 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Substitution 37492 68.69 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Insertion 37275 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -83 Cycle Base Deletion 37275 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Substitution 37489 72.65 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Insertion 37270 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -84 Cycle Base Deletion 37270 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Substitution 37460 86.25 26.00 26.70 -0.70 After
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Insertion 37256 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -85 Cycle Base Deletion 37256 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Substitution 37168 89.29 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Insertion 36956 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -86 Cycle Base Deletion 36956 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Substitution 37387 76.01 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Insertion 37162 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -87 Cycle Base Deletion 37162 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Substitution 37345 75.56 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Insertion 37107 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -88 Cycle Base Deletion 37107 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Substitution 37192 90.61 26.00 26.45 -0.45 After
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Insertion 36946 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -89 Cycle Base Deletion 36946 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Substitution 38918 53.49 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Insertion 38918 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -9 Cycle Base Deletion 38918 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Substitution 37175 62.79 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Insertion 36927 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -90 Cycle Base Deletion 36927 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Substitution 37027 84.23 26.00 26.66 -0.66 After
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Insertion 36772 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -91 Cycle Base Deletion 36772 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Substitution 36911 77.40 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Insertion 36640 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -92 Cycle Base Deletion 36640 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Substitution 36976 92.51 26.00 25.88 0.12 After
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Insertion 36716 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -93 Cycle Base Deletion 36716 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Substitution 36792 70.98 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Insertion 36526 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -94 Cycle Base Deletion 36526 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Substitution 36780 78.10 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Insertion 36510 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -95 Cycle Base Deletion 36510 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Substitution 36720 96.86 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Insertion 36439 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -96 Cycle Base Deletion 36439 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Substitution 36568 84.26 26.00 26.54 -0.54 After
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Insertion 36256 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -97 Cycle Base Deletion 36256 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Substitution 36696 75.83 27.00 26.32 0.68 After
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Insertion 36387 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -98 Cycle Base Deletion 36387 4.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Substitution 36447 80.22 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Insertion 36146 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 -99 Cycle Base Deletion 36146 4.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 1 Cycle Base Substitution 38523 90.67 26.00 25.93 0.07 After
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Substitution 38881 46.93 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Insertion 38881 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 10 Cycle Base Deletion 38881 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Substitution 36412 68.77 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Insertion 36114 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 100 Cycle Base Deletion 36114 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Substitution 36471 57.76 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Insertion 36177 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 101 Cycle Base Deletion 36177 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Substitution 36407 62.62 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Insertion 36103 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 102 Cycle Base Deletion 36103 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Substitution 36258 52.52 28.00 26.70 1.30 After
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Insertion 35949 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 103 Cycle Base Deletion 35949 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Substitution 36336 60.07 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Insertion 36030 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 104 Cycle Base Deletion 36030 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Substitution 36202 72.49 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Insertion 35891 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 105 Cycle Base Deletion 35891 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Substitution 35955 63.72 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Insertion 35631 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 106 Cycle Base Deletion 35631 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Substitution 36004 76.55 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Insertion 35685 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 107 Cycle Base Deletion 35685 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Substitution 35790 71.64 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Insertion 35445 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 108 Cycle Base Deletion 35445 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Substitution 35889 58.34 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Insertion 35555 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 109 Cycle Base Deletion 35555 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Substitution 38808 40.66 29.00 27.61 1.39 After
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Insertion 38808 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 11 Cycle Base Deletion 38808 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Substitution 35644 91.00 26.00 25.88 0.12 After
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Insertion 35308 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 110 Cycle Base Deletion 35308 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Substitution 35525 66.46 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Insertion 35188 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 111 Cycle Base Deletion 35188 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Substitution 35424 62.35 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Insertion 35107 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 112 Cycle Base Deletion 35107 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Substitution 35519 62.71 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Insertion 35202 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 113 Cycle Base Deletion 35202 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Substitution 35330 61.22 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Insertion 35007 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 114 Cycle Base Deletion 35007 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Substitution 35317 79.74 26.00 26.55 -0.55 After
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Insertion 34971 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 115 Cycle Base Deletion 34971 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Substitution 35159 70.53 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Insertion 34819 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 116 Cycle Base Deletion 34819 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Substitution 35236 76.90 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Insertion 34876 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 117 Cycle Base Deletion 34876 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Substitution 34997 57.74 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Insertion 34639 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 118 Cycle Base Deletion 34639 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Substitution 34955 63.69 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Insertion 34580 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 119 Cycle Base Deletion 34580 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Substitution 38783 42.83 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Insertion 38783 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 12 Cycle Base Deletion 38783 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Substitution 34836 60.97 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Insertion 34478 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 120 Cycle Base Deletion 34478 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Substitution 34733 66.44 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Insertion 34369 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 121 Cycle Base Deletion 34369 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Substitution 34773 65.01 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Insertion 34413 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 122 Cycle Base Deletion 34413 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Substitution 34575 73.86 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Insertion 34217 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 123 Cycle Base Deletion 34217 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Substitution 34457 64.75 27.00 25.89 1.11 After
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Insertion 34068 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 124 Cycle Base Deletion 34068 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Substitution 34336 56.37 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Insertion 33955 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 125 Cycle Base Deletion 33955 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Substitution 34392 67.30 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Insertion 34000 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 126 Cycle Base Deletion 34000 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Substitution 34299 61.15 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Insertion 33913 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 127 Cycle Base Deletion 33913 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Substitution 34122 67.58 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Insertion 33746 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 128 Cycle Base Deletion 33746 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Substitution 34071 79.36 26.00 26.06 -0.06 After
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Insertion 33705 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 129 Cycle Base Deletion 33705 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Substitution 38859 33.48 30.00 28.08 1.92 After
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Insertion 38859 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 13 Cycle Base Deletion 38859 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Substitution 33955 66.71 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Insertion 33577 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 130 Cycle Base Deletion 33577 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Substitution 33846 72.40 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Insertion 33471 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 131 Cycle Base Deletion 33471 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Substitution 33883 59.68 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Insertion 33505 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 132 Cycle Base Deletion 33505 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Substitution 33637 77.26 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Insertion 33228 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 133 Cycle Base Deletion 33228 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Substitution 33588 79.51 26.00 25.86 0.14 After
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Insertion 33164 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 134 Cycle Base Deletion 33164 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Substitution 33334 69.50 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Insertion 32904 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 135 Cycle Base Deletion 32904 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Substitution 33377 71.79 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Insertion 32941 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 136 Cycle Base Deletion 32941 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Substitution 33315 62.23 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Insertion 32873 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 137 Cycle Base Deletion 32873 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Substitution 33229 78.32 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Insertion 32803 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 138 Cycle Base Deletion 32803 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Substitution 33076 69.23 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Insertion 32654 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 139 Cycle Base Deletion 32654 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Substitution 38755 38.05 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Insertion 38755 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 14 Cycle Base Deletion 38755 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Substitution 32980 70.64 27.00 26.07 0.93 After
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Insertion 32576 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 140 Cycle Base Deletion 32576 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Substitution 32900 68.36 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Insertion 32491 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 141 Cycle Base Deletion 32491 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Substitution 32778 76.89 26.00 26.72 -0.72 After
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Insertion 32318 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 142 Cycle Base Deletion 32318 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Substitution 32719 78.80 26.00 26.38 -0.38 After
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Insertion 32276 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 143 Cycle Base Deletion 32276 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Substitution 32617 63.52 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Insertion 32145 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 144 Cycle Base Deletion 32145 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Substitution 32419 55.73 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Insertion 31957 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 145 Cycle Base Deletion 31957 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Substitution 32294 86.27 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Insertion 31858 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 146 Cycle Base Deletion 31858 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 147 Cycle Base Substitution 32217 77.24 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L003 148 Cycle Base Substitution 32134 83.83 26.00 26.64 -0.64 After
REGRESSION.HCC1395_tumor.L003 149 Cycle Base Substitution 31960 90.02 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Substitution 38958 36.03 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Insertion 38958 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 15 Cycle Base Deletion 38958 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 150 Cycle Base Substitution 31974 73.99 26.00 26.58 -0.58 After
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Substitution 38877 31.47 30.00 28.65 1.35 After
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Insertion 38877 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 16 Cycle Base Deletion 38877 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Substitution 38886 28.91 30.00 28.58 1.42 After
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Insertion 38886 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 17 Cycle Base Deletion 38886 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Substitution 38879 22.03 30.00 28.65 1.35 After
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Insertion 38879 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 18 Cycle Base Deletion 38879 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Substitution 38776 28.99 30.00 28.34 1.66 After
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Insertion 38776 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 19 Cycle Base Deletion 38776 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 2 Cycle Base Substitution 39014 85.21 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Substitution 38769 18.80 30.00 28.63 1.37 After
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Insertion 38769 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 20 Cycle Base Deletion 38769 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Substitution 38749 34.77 29.00 28.83 0.17 After
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Insertion 38749 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 21 Cycle Base Deletion 38749 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Substitution 38723 28.89 30.00 28.33 1.67 After
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Insertion 38722 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 22 Cycle Base Deletion 38722 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Substitution 38816 24.84 30.00 28.53 1.47 After
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Insertion 38815 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 23 Cycle Base Deletion 38815 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Substitution 38688 29.76 30.00 28.51 1.49 After
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Insertion 38687 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 24 Cycle Base Deletion 38687 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Substitution 38680 31.75 30.00 28.50 1.50 After
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Insertion 38679 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 25 Cycle Base Deletion 38679 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Substitution 38661 43.66 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Insertion 38661 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 26 Cycle Base Deletion 38661 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Substitution 38470 41.41 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Insertion 38468 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 27 Cycle Base Deletion 38468 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Substitution 38559 45.88 28.00 27.74 0.26 After
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Insertion 38558 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 28 Cycle Base Deletion 38558 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Substitution 38720 33.06 30.00 28.37 1.63 After
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Insertion 38715 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 29 Cycle Base Deletion 38715 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 3 Cycle Base Substitution 39005 105.83 26.00 27.37 -1.37 After
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Substitution 38709 48.00 28.00 27.74 0.26 After
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Insertion 38700 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 30 Cycle Base Deletion 38700 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Substitution 38701 44.53 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Insertion 38692 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 31 Cycle Base Deletion 38692 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Substitution 38701 60.53 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Insertion 38691 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 32 Cycle Base Deletion 38691 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Substitution 38630 36.52 29.00 28.01 0.99 After
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Insertion 38624 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 33 Cycle Base Deletion 38624 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Substitution 38616 40.43 29.00 27.80 1.20 After
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Insertion 38612 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 34 Cycle Base Deletion 38612 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Substitution 38656 38.14 29.00 27.63 1.37 After
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Insertion 38652 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 35 Cycle Base Deletion 38652 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Substitution 38499 53.53 28.00 28.13 -0.13 After
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Insertion 38496 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 36 Cycle Base Deletion 38496 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Substitution 38523 40.38 29.00 27.91 1.09 After
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Insertion 38519 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 37 Cycle Base Deletion 38519 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Substitution 38536 50.01 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Insertion 38534 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 38 Cycle Base Deletion 38534 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Substitution 38590 38.07 29.00 27.56 1.44 After
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Insertion 38588 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 39 Cycle Base Deletion 38588 5.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 4 Cycle Base Substitution 38873 79.06 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Substitution 38490 41.91 29.00 27.90 1.10 After
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Insertion 38488 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 40 Cycle Base Deletion 38488 5.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Substitution 38531 48.38 29.00 28.06 0.94 After
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Insertion 38530 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 41 Cycle Base Deletion 38530 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Substitution 38466 35.81 29.00 28.18 0.82 After
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Insertion 38465 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 42 Cycle Base Deletion 38465 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Substitution 38593 44.39 29.00 28.15 0.85 After
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Insertion 38591 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 43 Cycle Base Deletion 38591 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Substitution 38592 42.89 29.00 28.04 0.96 After
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Insertion 38589 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 44 Cycle Base Deletion 38589 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Substitution 38514 33.96 29.00 28.03 0.97 After
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Insertion 38506 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 45 Cycle Base Deletion 38506 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Substitution 38530 31.64 30.00 28.34 1.66 After
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Insertion 38521 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 46 Cycle Base Deletion 38521 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Substitution 38542 44.14 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Insertion 38532 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 47 Cycle Base Deletion 38532 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Substitution 38512 50.64 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Insertion 38500 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 48 Cycle Base Deletion 38500 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Substitution 38532 37.22 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Insertion 38520 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 49 Cycle Base Deletion 38520 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Substitution 38980 54.09 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Insertion 38980 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 5 Cycle Base Deletion 38980 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Substitution 38451 43.33 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Insertion 38437 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 50 Cycle Base Deletion 38437 5.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Substitution 38376 53.49 28.00 27.61 0.39 After
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Insertion 38358 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 51 Cycle Base Deletion 38358 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Substitution 38613 48.42 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Insertion 38593 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 52 Cycle Base Deletion 38593 5.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Substitution 38413 45.09 28.00 27.77 0.23 After
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Insertion 38386 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 53 Cycle Base Deletion 38386 5.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Substitution 38391 39.34 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Insertion 38357 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 54 Cycle Base Deletion 38357 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Substitution 38442 40.39 29.00 27.75 1.25 After
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Insertion 38408 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 55 Cycle Base Deletion 38408 5.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Substitution 38405 56.14 28.00 27.56 0.44 After
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Insertion 38365 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 56 Cycle Base Deletion 38365 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Substitution 38410 54.97 28.00 27.42 0.58 After
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Insertion 38350 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 57 Cycle Base Deletion 38350 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Substitution 38294 45.10 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Insertion 38226 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 58 Cycle Base Deletion 38226 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Substitution 38274 43.77 29.00 27.60 1.40 After
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Insertion 38203 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 59 Cycle Base Deletion 38203 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Substitution 38842 51.64 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Insertion 38842 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 6 Cycle Base Deletion 38842 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Substitution 38298 44.08 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Insertion 38231 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 60 Cycle Base Deletion 38231 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Substitution 38224 48.97 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Insertion 38159 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 61 Cycle Base Deletion 38159 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Substitution 38251 53.49 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Insertion 38186 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 62 Cycle Base Deletion 38186 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Substitution 38296 43.25 29.00 27.69 1.31 After
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Insertion 38232 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 63 Cycle Base Deletion 38232 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Substitution 38224 48.02 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Insertion 38140 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 64 Cycle Base Deletion 38140 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Substitution 38295 45.45 28.00 27.61 0.39 After
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Insertion 38206 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 65 Cycle Base Deletion 38206 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Substitution 38211 43.18 29.00 27.63 1.37 After
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Insertion 38115 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 66 Cycle Base Deletion 38115 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Substitution 38248 41.72 29.00 27.97 1.03 After
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Insertion 38151 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 67 Cycle Base Deletion 38151 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Substitution 38037 52.48 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Insertion 37937 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 68 Cycle Base Deletion 37937 4.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Substitution 38009 59.14 28.00 27.42 0.58 After
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Insertion 37906 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 69 Cycle Base Deletion 37906 6.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Substitution 38862 49.04 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Insertion 38862 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 7 Cycle Base Deletion 38862 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Substitution 38091 64.48 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Insertion 37982 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 70 Cycle Base Deletion 37982 5.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Substitution 38103 39.39 29.00 27.37 1.63 After
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Insertion 37978 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 71 Cycle Base Deletion 37978 5.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Substitution 38039 54.20 28.00 27.34 0.66 After
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Insertion 37906 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 72 Cycle Base Deletion 37906 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Substitution 37943 60.62 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Insertion 37796 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 73 Cycle Base Deletion 37796 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Substitution 37949 48.00 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Insertion 37787 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 74 Cycle Base Deletion 37787 6.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Substitution 37947 63.27 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Insertion 37782 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 75 Cycle Base Deletion 37782 4.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Substitution 37890 57.68 28.00 27.23 0.77 After
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Insertion 37716 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 76 Cycle Base Deletion 37716 4.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Substitution 37779 64.80 28.00 27.32 0.68 After
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Insertion 37602 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 77 Cycle Base Deletion 37602 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Substitution 37753 57.50 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Insertion 37580 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 78 Cycle Base Deletion 37580 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Substitution 37658 57.31 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Insertion 37477 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 79 Cycle Base Deletion 37477 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Substitution 38943 44.43 29.00 27.44 1.56 After
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Insertion 38943 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 8 Cycle Base Deletion 38943 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Substitution 37642 57.12 28.00 27.11 0.89 After
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Insertion 37462 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 80 Cycle Base Deletion 37462 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Substitution 37631 51.11 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Insertion 37451 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 81 Cycle Base Deletion 37451 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Substitution 37549 64.07 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Insertion 37368 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 82 Cycle Base Deletion 37368 4.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Substitution 37502 60.46 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Insertion 37291 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 83 Cycle Base Deletion 37291 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Substitution 37526 55.62 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Insertion 37319 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 84 Cycle Base Deletion 37319 3.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Substitution 37448 63.65 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Insertion 37233 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 85 Cycle Base Deletion 37233 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Substitution 37402 67.65 27.00 27.33 -0.33 After
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Insertion 37190 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 86 Cycle Base Deletion 37190 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Substitution 37211 56.00 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Insertion 36993 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 87 Cycle Base Deletion 36993 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Substitution 37297 55.70 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Insertion 37065 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 88 Cycle Base Deletion 37065 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Substitution 37261 57.87 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Insertion 37023 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 89 Cycle Base Deletion 37023 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Substitution 38963 43.40 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Insertion 38963 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 9 Cycle Base Deletion 38963 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Substitution 37192 56.00 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Insertion 36953 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 90 Cycle Base Deletion 36953 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Substitution 37017 55.88 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Insertion 36763 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 91 Cycle Base Deletion 36763 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Substitution 36952 63.01 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Insertion 36689 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 92 Cycle Base Deletion 36689 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Substitution 36971 63.63 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Insertion 36704 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 93 Cycle Base Deletion 36704 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Substitution 36901 74.12 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Insertion 36620 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 94 Cycle Base Deletion 36620 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Substitution 36876 59.49 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Insertion 36594 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 95 Cycle Base Deletion 36594 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Substitution 36777 62.66 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Insertion 36497 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 96 Cycle Base Deletion 36497 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Substitution 36737 66.87 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Insertion 36438 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 97 Cycle Base Deletion 36438 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Substitution 36641 70.06 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Insertion 36344 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 98 Cycle Base Deletion 36344 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Substitution 36455 67.82 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Insertion 36168 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 99 Cycle Base Deletion 36168 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L003 10 QualityScore Base Substitution 14157 1500.70 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L003 11 QualityScore Base Substitution 13821 1047.67 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L003 12 QualityScore Base Substitution 22102 1265.39 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L003 13 QualityScore Base Substitution 6737 76.29 17.00 13.00 4.00 After
REGRESSION.HCC1395_tumor.L003 14 QualityScore Base Substitution 24928 328.60 18.00 14.00 4.00 After
REGRESSION.HCC1395_tumor.L003 15 QualityScore Base Substitution 17652 9.10 22.00 15.00 7.00 After
REGRESSION.HCC1395_tumor.L003 16 QualityScore Base Substitution 14425 1.93 22.00 16.00 6.00 After
REGRESSION.HCC1395_tumor.L003 22 QualityScore Base Substitution 8081 2.08 24.00 22.00 2.00 After
REGRESSION.HCC1395_tumor.L003 23 QualityScore Base Substitution 109977 675.79 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 24 QualityScore Base Substitution 97851 386.35 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L003 25 QualityScore Base Substitution 125268 237.12 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L003 28 QualityScore Base Substitution 7811 2.44 28.00 28.00 0.00 After
REGRESSION.HCC1395_tumor.L003 29 QualityScore Base Substitution 58249 97.26 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 30 QualityScore Base Substitution 2518375 1510.85 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L003 31 QualityScore Base Substitution 2868724 1264.32 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L003 32 QualityScore Base Substitution 4689274 1097.00 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L003 33 QualityScore Base Substitution 365759 47.64 36.00 33.00 3.00 After
REGRESSION.HCC1395_tumor.L003 45 QualityScore Base Insertion 11030675 503.11 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 45 QualityScore Base Deletion 11030675 1006.05 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L003 8 QualityScore Base Substitution 4587 837.73 7.00 8.00 -1.00 After
REGRESSION.HCC1395_tumor.L003 9 QualityScore Base Substitution 62897 8356.47 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AA Context Base Substitution 837821 1816.90 27.00 25.50 1.50 After
REGRESSION.HCC1395_tumor.L004 AAA Context Base Insertion 298431 58.58 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 AAA Context Base Deletion 298431 212.15 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L004 AAC Context Base Insertion 133014 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAC Context Base Deletion 133014 7.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAG Context Base Insertion 198307 7.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAG Context Base Deletion 198307 8.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAT Context Base Insertion 174600 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AAT Context Base Deletion 174600 12.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AC Context Base Substitution 531691 1873.51 25.00 24.77 0.23 After
REGRESSION.HCC1395_tumor.L004 ACA Context Base Insertion 204673 18.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 ACA Context Base Deletion 204673 40.25 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 ACC Context Base Insertion 146375 7.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACC Context Base Deletion 146375 6.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACG Context Base Insertion 30549 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACG Context Base Deletion 30549 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACT Context Base Insertion 158812 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ACT Context Base Deletion 158812 15.24 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 AG Context Base Substitution 799310 608.75 31.00 28.76 2.24 After
REGRESSION.HCC1395_tumor.L004 AGA Context Base Insertion 221945 5.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGA Context Base Deletion 221945 11.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGC Context Base Insertion 191489 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGC Context Base Deletion 191489 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGG Context Base Insertion 226531 14.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGG Context Base Deletion 226531 7.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGT Context Base Insertion 155317 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AGT Context Base Deletion 155317 5.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 AT Context Base Substitution 603069 643.17 30.00 27.66 2.34 After
REGRESSION.HCC1395_tumor.L004 ATA Context Base Insertion 135137 8.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATA Context Base Deletion 135137 5.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATC Context Base Insertion 121264 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATC Context Base Deletion 121264 5.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATG Context Base Insertion 174368 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATG Context Base Deletion 174368 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATT Context Base Insertion 182606 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 ATT Context Base Deletion 182606 7.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CA Context Base Substitution 855121 1788.78 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L004 CAA Context Base Insertion 172391 6.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAA Context Base Deletion 172391 11.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAC Context Base Insertion 183343 21.67 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 CAC Context Base Deletion 183343 39.32 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 CAG Context Base Insertion 291255 9.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAG Context Base Deletion 291255 11.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAT Context Base Insertion 170030 7.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CAT Context Base Deletion 170030 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CC Context Base Substitution 761769 2407.38 25.00 24.70 0.30 After
REGRESSION.HCC1395_tumor.L004 CCA Context Base Insertion 244012 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCA Context Base Deletion 244012 8.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCC Context Base Insertion 211034 16.46 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 CCC Context Base Deletion 211034 18.25 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 CCG Context Base Insertion 53687 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCG Context Base Deletion 53687 7.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCT Context Base Insertion 242734 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CCT Context Base Deletion 242734 12.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CG Context Base Substitution 160349 506.12 25.00 25.54 -0.54 After
REGRESSION.HCC1395_tumor.L004 CGA Context Base Insertion 55802 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGA Context Base Deletion 55802 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGC Context Base Insertion 79892 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGC Context Base Deletion 79892 6.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGG Context Base Insertion 97250 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGG Context Base Deletion 97250 8.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGT Context Base Insertion 62654 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CGT Context Base Deletion 62654 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CT Context Base Substitution 839241 407.65 33.00 29.41 3.59 After
REGRESSION.HCC1395_tumor.L004 CTA Context Base Insertion 96842 0.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTA Context Base Deletion 96842 8.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTC Context Base Insertion 201503 6.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTC Context Base Deletion 201503 19.70 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 CTG Context Base Insertion 293472 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTG Context Base Deletion 293472 13.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTT Context Base Insertion 209756 6.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 CTT Context Base Deletion 209756 9.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GA Context Base Substitution 702149 999.47 28.00 27.00 1.00 After
REGRESSION.HCC1395_tumor.L004 GAA Context Base Insertion 209007 6.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAA Context Base Deletion 209007 9.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAC Context Base Insertion 118331 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAC Context Base Deletion 118331 7.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAG Context Base Insertion 207467 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAG Context Base Deletion 207467 11.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAT Context Base Insertion 125021 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GAT Context Base Deletion 125021 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GC Context Base Substitution 660030 1459.12 27.00 26.03 0.97 After
REGRESSION.HCC1395_tumor.L004 GCA Context Base Insertion 204120 8.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCA Context Base Deletion 204120 5.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCC Context Base Insertion 198437 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCC Context Base Deletion 198437 10.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCG Context Base Insertion 48902 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCG Context Base Deletion 48902 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCT Context Base Insertion 208387 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GCT Context Base Deletion 208387 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GG Context Base Substitution 787461 747.10 30.00 27.77 2.23 After
REGRESSION.HCC1395_tumor.L004 GGA Context Base Insertion 214283 15.81 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 GGA Context Base Deletion 214283 13.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGC Context Base Insertion 195647 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGC Context Base Deletion 195647 4.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGG Context Base Insertion 217639 12.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGG Context Base Deletion 217639 30.08 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 GGT Context Base Insertion 157474 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GGT Context Base Deletion 157474 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GT Context Base Substitution 589913 1053.44 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L004 GTA Context Base Insertion 101628 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTA Context Base Deletion 101628 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTC Context Base Insertion 126852 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTC Context Base Deletion 126852 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTG Context Base Insertion 199530 15.51 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 GTG Context Base Deletion 199530 35.94 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 GTT Context Base Insertion 149655 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 GTT Context Base Deletion 149655 13.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TA Context Base Substitution 485223 1133.67 26.00 25.57 0.43 After
REGRESSION.HCC1395_tumor.L004 TAA Context Base Insertion 150771 10.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAA Context Base Deletion 150771 15.62 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 TAC Context Base Insertion 93665 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAC Context Base Deletion 93665 5.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAG Context Base Insertion 96050 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAG Context Base Deletion 96050 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAT Context Base Insertion 129173 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TAT Context Base Deletion 129173 4.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TC Context Base Substitution 647233 1633.83 26.00 25.61 0.39 After
REGRESSION.HCC1395_tumor.L004 TCA Context Base Insertion 195700 5.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCA Context Base Deletion 195700 15.23 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 TCC Context Base Insertion 200887 36.22 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 TCC Context Base Deletion 200887 9.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCG Context Base Insertion 26061 0.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCG Context Base Deletion 26061 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCT Context Base Insertion 223567 6.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TCT Context Base Deletion 223567 15.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TG Context Base Substitution 844041 350.23 33.00 29.46 3.54 After
REGRESSION.HCC1395_tumor.L004 TGA Context Base Insertion 204712 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGA Context Base Deletion 204712 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGC Context Base Insertion 188868 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGC Context Base Deletion 188868 6.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGG Context Base Insertion 240137 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGG Context Base Deletion 240137 7.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TGT Context Base Insertion 210672 17.07 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 TGT Context Base Deletion 210672 38.86 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 TT Context Base Substitution 843476 918.40 30.00 28.29 1.71 After
REGRESSION.HCC1395_tumor.L004 TTA Context Base Insertion 147978 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTA Context Base Deletion 147978 9.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTC Context Base Insertion 193655 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTC Context Base Deletion 193655 12.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTG Context Base Insertion 170749 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTG Context Base Deletion 170749 7.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 TTT Context Base Insertion 295780 58.28 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L004 TTT Context Base Deletion 295780 170.31 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L004 -1 Cycle Base Substitution 38516 154.44 24.00 23.45 0.55 After
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Substitution 38815 43.82 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Insertion 38815 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -10 Cycle Base Deletion 38815 2.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Substitution 36419 77.24 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Insertion 36138 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -100 Cycle Base Deletion 36138 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Substitution 36333 75.47 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Insertion 36030 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -101 Cycle Base Deletion 36030 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Substitution 36445 83.04 26.00 26.90 -0.90 After
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Insertion 36121 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -102 Cycle Base Deletion 36121 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Substitution 36388 67.25 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Insertion 36037 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -103 Cycle Base Deletion 36037 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Substitution 36163 93.86 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Insertion 35823 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -104 Cycle Base Deletion 35823 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Substitution 36144 86.07 26.00 26.59 -0.59 After
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Insertion 35827 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -105 Cycle Base Deletion 35827 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Substitution 36047 80.27 26.00 26.57 -0.57 After
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Insertion 35717 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -106 Cycle Base Deletion 35717 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Substitution 35788 77.94 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Insertion 35478 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -107 Cycle Base Deletion 35478 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Substitution 35794 72.11 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Insertion 35481 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -108 Cycle Base Deletion 35481 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Substitution 35712 84.37 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Insertion 35385 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -109 Cycle Base Deletion 35385 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Substitution 38754 47.59 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Insertion 38753 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -11 Cycle Base Deletion 38753 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Substitution 35588 79.85 26.00 26.42 -0.42 After
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Insertion 35238 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -110 Cycle Base Deletion 35238 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Substitution 35589 81.54 26.00 26.65 -0.65 After
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Insertion 35243 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -111 Cycle Base Deletion 35243 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Substitution 35496 87.58 26.00 26.29 -0.29 After
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Insertion 35163 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -112 Cycle Base Deletion 35163 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Substitution 35292 75.22 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Insertion 34940 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -113 Cycle Base Deletion 34940 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Substitution 35357 76.58 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Insertion 35025 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -114 Cycle Base Deletion 35025 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Substitution 35169 84.52 26.00 26.47 -0.47 After
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Insertion 34818 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -115 Cycle Base Deletion 34818 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Substitution 35177 76.16 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Insertion 34842 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -116 Cycle Base Deletion 34842 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Substitution 34930 93.43 26.00 26.42 -0.42 After
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Insertion 34591 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -117 Cycle Base Deletion 34591 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Substitution 34987 82.62 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Insertion 34664 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -118 Cycle Base Deletion 34664 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Substitution 35016 97.20 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Insertion 34689 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -119 Cycle Base Deletion 34689 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Substitution 38848 47.71 28.00 27.75 0.25 After
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Insertion 38847 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -12 Cycle Base Deletion 38847 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Substitution 34808 88.57 26.00 26.42 -0.42 After
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Insertion 34463 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -120 Cycle Base Deletion 34463 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Substitution 34647 67.39 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Insertion 34295 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -121 Cycle Base Deletion 34295 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Substitution 34710 93.29 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Insertion 34334 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -122 Cycle Base Deletion 34334 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Substitution 34576 87.16 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Insertion 34162 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -123 Cycle Base Deletion 34162 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Substitution 34517 79.89 26.00 26.42 -0.42 After
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Insertion 34095 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -124 Cycle Base Deletion 34095 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Substitution 34302 78.51 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Insertion 33877 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -125 Cycle Base Deletion 33877 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Substitution 34256 81.70 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Insertion 33825 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -126 Cycle Base Deletion 33825 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Substitution 34195 78.16 26.00 26.45 -0.45 After
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Insertion 33770 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -127 Cycle Base Deletion 33770 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Substitution 34026 79.16 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Insertion 33615 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -128 Cycle Base Deletion 33615 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Substitution 33949 90.89 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Insertion 33514 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -129 Cycle Base Deletion 33514 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Substitution 38815 54.55 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Insertion 38814 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -13 Cycle Base Deletion 38814 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Substitution 33830 78.56 26.00 26.04 -0.04 After
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Insertion 33436 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -130 Cycle Base Deletion 33436 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Substitution 33691 68.22 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Insertion 33288 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -131 Cycle Base Deletion 33288 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Substitution 33666 67.76 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Insertion 33250 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -132 Cycle Base Deletion 33250 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Substitution 33525 85.24 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Insertion 33108 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -133 Cycle Base Deletion 33108 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Substitution 33496 71.45 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Insertion 33065 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -134 Cycle Base Deletion 33065 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Substitution 33301 80.50 26.00 26.49 -0.49 After
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Insertion 32871 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -135 Cycle Base Deletion 32871 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Substitution 33219 73.52 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Insertion 32796 0.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -136 Cycle Base Deletion 32796 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Substitution 33150 78.75 26.00 26.50 -0.50 After
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Insertion 32711 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -137 Cycle Base Deletion 32711 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Substitution 32978 70.45 27.00 26.28 0.72 After
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Insertion 32556 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -138 Cycle Base Deletion 32556 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Substitution 32914 85.36 26.00 26.01 -0.01 After
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Insertion 32452 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -139 Cycle Base Deletion 32452 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Substitution 38738 55.77 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Insertion 38737 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -14 Cycle Base Deletion 38737 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Substitution 32748 71.08 27.00 26.23 0.77 After
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Insertion 32258 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -140 Cycle Base Deletion 32258 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Substitution 32655 79.58 26.00 26.41 -0.41 After
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Insertion 32121 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -141 Cycle Base Deletion 32121 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Substitution 32657 67.99 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Insertion 32057 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -142 Cycle Base Deletion 32057 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Substitution 32407 79.26 26.00 26.30 -0.30 After
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Insertion 31761 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -143 Cycle Base Deletion 31761 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Substitution 32334 71.91 26.00 26.21 -0.21 After
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Insertion 31645 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -144 Cycle Base Deletion 31645 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Substitution 32294 58.05 27.00 26.23 0.77 After
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Insertion 24881 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -145 Cycle Base Deletion 24881 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Substitution 32107 22.92 28.00 26.11 1.89 After
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Insertion 24830 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -146 Cycle Base Deletion 24830 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -147 Cycle Base Substitution 31880 19.76 26.00 22.36 3.64 After
REGRESSION.HCC1395_tumor.L004 -148 Cycle Base Substitution 31606 26.02 24.00 16.13 7.87 After
REGRESSION.HCC1395_tumor.L004 -149 Cycle Base Substitution 19760 27.84 21.00 14.18 6.82 After
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Substitution 38840 37.05 29.00 27.90 1.10 After
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Insertion 38840 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -15 Cycle Base Deletion 38840 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -150 Cycle Base Substitution 6863 23.87 25.00 25.87 -0.87 After
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Substitution 38870 55.77 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Insertion 38870 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -16 Cycle Base Deletion 38870 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Substitution 38781 49.25 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Insertion 38781 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -17 Cycle Base Deletion 38781 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Substitution 38623 53.45 28.00 27.92 0.08 After
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Insertion 38623 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -18 Cycle Base Deletion 38623 5.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Substitution 38708 63.62 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Insertion 38708 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -19 Cycle Base Deletion 38708 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -2 Cycle Base Substitution 38937 122.57 25.00 25.74 -0.74 After
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Substitution 38717 65.46 28.00 27.99 0.01 After
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Insertion 38717 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -20 Cycle Base Deletion 38717 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Substitution 38701 45.95 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Insertion 38701 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -21 Cycle Base Deletion 38701 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Substitution 38746 42.22 29.00 27.92 1.08 After
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Insertion 38746 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -22 Cycle Base Deletion 38746 4.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Substitution 38799 59.42 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Insertion 38799 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -23 Cycle Base Deletion 38799 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Substitution 38683 51.19 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Insertion 38683 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -24 Cycle Base Deletion 38683 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Substitution 38633 50.05 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Insertion 38633 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -25 Cycle Base Deletion 38633 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Substitution 38628 50.37 28.00 26.85 1.15 After
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Insertion 38628 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -26 Cycle Base Deletion 38628 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Substitution 38708 53.73 28.00 26.85 1.15 After
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Insertion 38708 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -27 Cycle Base Deletion 38708 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Substitution 38619 57.30 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Insertion 38617 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -28 Cycle Base Deletion 38617 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Substitution 38705 61.26 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Insertion 38700 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -29 Cycle Base Deletion 38700 4.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -3 Cycle Base Substitution 39009 133.37 25.00 26.19 -1.19 After
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Substitution 38740 58.07 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Insertion 38734 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -30 Cycle Base Deletion 38734 5.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Substitution 38613 65.59 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Insertion 38608 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -31 Cycle Base Deletion 38608 5.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Substitution 38722 46.53 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Insertion 38718 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -32 Cycle Base Deletion 38718 5.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Substitution 38574 47.89 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Insertion 38571 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -33 Cycle Base Deletion 38571 4.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Substitution 38569 41.53 29.00 27.06 1.94 After
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Insertion 38567 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -34 Cycle Base Deletion 38567 4.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Substitution 38638 60.62 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Insertion 38634 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -35 Cycle Base Deletion 38634 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Substitution 38649 57.18 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Insertion 38643 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -36 Cycle Base Deletion 38643 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Substitution 38506 61.26 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Insertion 38500 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -37 Cycle Base Deletion 38500 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Substitution 38533 58.84 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Insertion 38527 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -38 Cycle Base Deletion 38527 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Substitution 38555 67.44 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Insertion 38550 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -39 Cycle Base Deletion 38550 4.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -4 Cycle Base Substitution 38909 89.57 26.00 26.15 -0.15 After
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Substitution 38507 58.30 28.00 26.98 1.02 After
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Insertion 38501 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -40 Cycle Base Deletion 38501 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Substitution 38439 67.55 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Insertion 38434 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -41 Cycle Base Deletion 38434 4.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Substitution 38369 68.18 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Insertion 38366 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -42 Cycle Base Deletion 38366 4.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Substitution 38403 43.97 29.00 27.37 1.63 After
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Insertion 38396 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -43 Cycle Base Deletion 38396 4.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Substitution 38419 50.61 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Insertion 38413 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -44 Cycle Base Deletion 38413 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Substitution 38445 45.25 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Insertion 38440 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -45 Cycle Base Deletion 38440 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Substitution 38412 46.50 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Insertion 38409 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -46 Cycle Base Deletion 38409 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Substitution 38390 61.70 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Insertion 38381 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -47 Cycle Base Deletion 38381 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Substitution 38428 58.72 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Insertion 38418 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -48 Cycle Base Deletion 38418 4.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Substitution 38468 54.83 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Insertion 38457 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -49 Cycle Base Deletion 38457 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Substitution 38996 56.81 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Insertion 38996 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -5 Cycle Base Deletion 38996 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Substitution 38412 52.56 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Insertion 38396 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -50 Cycle Base Deletion 38396 4.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Substitution 38300 60.98 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Insertion 38289 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -51 Cycle Base Deletion 38289 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Substitution 38257 53.63 28.00 26.89 1.11 After
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Insertion 38244 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -52 Cycle Base Deletion 38244 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Substitution 38412 47.40 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Insertion 38394 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -53 Cycle Base Deletion 38394 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Substitution 38321 66.40 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Insertion 38296 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -54 Cycle Base Deletion 38296 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Substitution 38238 68.85 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Insertion 38202 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -55 Cycle Base Deletion 38202 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Substitution 38373 64.43 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Insertion 38320 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -56 Cycle Base Deletion 38320 4.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Substitution 38277 58.44 28.00 27.06 0.94 After
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Insertion 38215 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -57 Cycle Base Deletion 38215 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Substitution 38357 60.09 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Insertion 38291 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -58 Cycle Base Deletion 38291 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Substitution 38328 69.40 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Insertion 38264 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -59 Cycle Base Deletion 38264 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Substitution 38839 70.18 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Insertion 38839 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -6 Cycle Base Deletion 38839 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Substitution 38273 50.88 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Insertion 38209 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -60 Cycle Base Deletion 38209 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Substitution 38209 58.46 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Insertion 38142 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -61 Cycle Base Deletion 38142 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Substitution 38311 80.23 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Insertion 38245 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -62 Cycle Base Deletion 38245 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Substitution 38228 69.10 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Insertion 38156 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -63 Cycle Base Deletion 38156 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Substitution 38259 50.12 28.00 27.34 0.66 After
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Insertion 38186 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -64 Cycle Base Deletion 38186 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Substitution 38312 62.38 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Insertion 38238 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -65 Cycle Base Deletion 38238 5.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Substitution 38243 63.93 28.00 27.21 0.79 After
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Insertion 38168 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -66 Cycle Base Deletion 38168 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Substitution 38221 63.81 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Insertion 38114 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -67 Cycle Base Deletion 38114 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Substitution 38172 73.37 27.00 27.03 -0.03 After
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Insertion 38054 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -68 Cycle Base Deletion 38054 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Substitution 38123 69.07 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Insertion 38005 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -69 Cycle Base Deletion 38005 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Substitution 38669 71.26 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Insertion 38669 0.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -7 Cycle Base Deletion 38669 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Substitution 38100 77.09 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Insertion 37980 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -70 Cycle Base Deletion 37980 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Substitution 38080 76.28 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Insertion 37966 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -71 Cycle Base Deletion 37966 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Substitution 37995 67.41 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Insertion 37865 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -72 Cycle Base Deletion 37865 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Substitution 38004 66.36 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Insertion 37853 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -73 Cycle Base Deletion 37853 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Substitution 37871 65.10 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Insertion 37699 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -74 Cycle Base Deletion 37699 4.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Substitution 38035 62.25 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Insertion 37858 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -75 Cycle Base Deletion 37858 5.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Substitution 37988 54.61 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Insertion 37825 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -76 Cycle Base Deletion 37825 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Substitution 37698 64.98 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Insertion 37542 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -77 Cycle Base Deletion 37542 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Substitution 37663 61.64 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Insertion 37497 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -78 Cycle Base Deletion 37497 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Substitution 37748 76.33 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Insertion 37570 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -79 Cycle Base Deletion 37570 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Substitution 38790 67.79 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Insertion 38790 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -8 Cycle Base Deletion 38790 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Substitution 37602 67.97 27.00 27.06 -0.06 After
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Insertion 37429 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -80 Cycle Base Deletion 37429 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Substitution 37678 68.55 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Insertion 37486 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -81 Cycle Base Deletion 37486 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Substitution 37453 74.74 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Insertion 37250 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -82 Cycle Base Deletion 37250 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Substitution 37516 63.62 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Insertion 37324 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -83 Cycle Base Deletion 37324 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Substitution 37470 78.22 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Insertion 37257 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -84 Cycle Base Deletion 37257 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Substitution 37498 79.87 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Insertion 37270 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -85 Cycle Base Deletion 37270 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Substitution 37440 74.54 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Insertion 37206 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -86 Cycle Base Deletion 37206 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Substitution 37308 57.71 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Insertion 37061 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -87 Cycle Base Deletion 37061 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Substitution 37304 78.84 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Insertion 37054 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -88 Cycle Base Deletion 37054 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Substitution 37256 77.39 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Insertion 37005 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -89 Cycle Base Deletion 37005 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Substitution 38902 55.52 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Insertion 38902 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -9 Cycle Base Deletion 38902 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Substitution 37151 69.40 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Insertion 36893 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -90 Cycle Base Deletion 36893 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Substitution 37077 67.09 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Insertion 36836 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -91 Cycle Base Deletion 36836 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Substitution 36919 84.68 26.00 26.88 -0.88 After
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Insertion 36688 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -92 Cycle Base Deletion 36688 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Substitution 36972 72.75 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Insertion 36731 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -93 Cycle Base Deletion 36731 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Substitution 36928 87.12 26.00 26.03 -0.03 After
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Insertion 36688 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -94 Cycle Base Deletion 36688 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Substitution 36875 84.08 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Insertion 36597 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -95 Cycle Base Deletion 36597 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Substitution 36798 82.29 26.00 26.59 -0.59 After
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Insertion 36509 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -96 Cycle Base Deletion 36509 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Substitution 36645 88.29 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Insertion 36362 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -97 Cycle Base Deletion 36362 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Substitution 36528 86.50 26.00 26.57 -0.57 After
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Insertion 36232 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -98 Cycle Base Deletion 36232 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Substitution 36588 76.38 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Insertion 36309 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 -99 Cycle Base Deletion 36309 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 1 Cycle Base Substitution 38510 69.78 27.00 26.15 0.85 After
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Substitution 38897 47.12 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Insertion 38897 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 10 Cycle Base Deletion 38897 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Substitution 36565 65.27 27.00 27.03 -0.03 After
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Insertion 36283 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 100 Cycle Base Deletion 36283 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Substitution 36429 67.43 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Insertion 36123 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 101 Cycle Base Deletion 36123 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Substitution 36230 54.62 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Insertion 35904 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 102 Cycle Base Deletion 35904 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Substitution 36233 51.16 28.00 27.23 0.77 After
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Insertion 35900 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 103 Cycle Base Deletion 35900 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Substitution 36267 64.24 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Insertion 35938 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 104 Cycle Base Deletion 35938 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Substitution 36055 64.12 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Insertion 35742 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 105 Cycle Base Deletion 35742 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Substitution 35989 78.03 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Insertion 35684 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 106 Cycle Base Deletion 35684 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Substitution 35941 74.15 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Insertion 35619 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 107 Cycle Base Deletion 35619 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Substitution 35761 91.32 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Insertion 35437 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 108 Cycle Base Deletion 35437 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Substitution 35805 65.84 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Insertion 35480 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 109 Cycle Base Deletion 35480 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Substitution 38936 36.54 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Insertion 38936 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 11 Cycle Base Deletion 38936 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Substitution 35678 71.30 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Insertion 35326 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 110 Cycle Base Deletion 35326 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Substitution 35536 65.27 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Insertion 35198 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 111 Cycle Base Deletion 35198 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Substitution 35432 55.89 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Insertion 35099 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 112 Cycle Base Deletion 35099 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Substitution 35432 54.99 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Insertion 35071 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 113 Cycle Base Deletion 35071 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Substitution 35391 58.95 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Insertion 35047 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 114 Cycle Base Deletion 35047 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Substitution 35251 71.28 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Insertion 34913 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 115 Cycle Base Deletion 34913 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Substitution 35195 73.35 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Insertion 34866 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 116 Cycle Base Deletion 34866 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Substitution 35067 75.05 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Insertion 34732 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 117 Cycle Base Deletion 34732 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Substitution 34994 60.17 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Insertion 34672 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 118 Cycle Base Deletion 34672 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Substitution 34906 89.06 26.00 26.73 -0.73 After
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Insertion 34585 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 119 Cycle Base Deletion 34585 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Substitution 38761 37.39 29.00 28.22 0.78 After
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Insertion 38761 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 12 Cycle Base Deletion 38761 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Substitution 34889 60.28 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Insertion 34543 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 120 Cycle Base Deletion 34543 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Substitution 34658 62.73 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Insertion 34305 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 121 Cycle Base Deletion 34305 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Substitution 34539 79.24 26.00 26.09 -0.09 After
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Insertion 34159 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 122 Cycle Base Deletion 34159 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Substitution 34539 84.35 26.00 26.79 -0.79 After
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Insertion 34143 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 123 Cycle Base Deletion 34143 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Substitution 34587 69.82 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Insertion 34170 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 124 Cycle Base Deletion 34170 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Substitution 34464 75.23 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Insertion 34050 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 125 Cycle Base Deletion 34050 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Substitution 34367 77.28 26.00 26.08 -0.08 After
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Insertion 33958 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 126 Cycle Base Deletion 33958 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Substitution 34289 69.10 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Insertion 33890 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 127 Cycle Base Deletion 33890 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Substitution 34165 58.53 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Insertion 33758 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 128 Cycle Base Deletion 33758 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Substitution 34014 70.14 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Insertion 33617 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 129 Cycle Base Deletion 33617 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Substitution 38781 55.06 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Insertion 38781 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 13 Cycle Base Deletion 38781 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Substitution 33965 68.36 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Insertion 33562 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 130 Cycle Base Deletion 33562 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Substitution 33710 67.14 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Insertion 33305 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 131 Cycle Base Deletion 33305 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Substitution 33621 54.89 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Insertion 33211 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 132 Cycle Base Deletion 33211 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Substitution 33560 65.54 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Insertion 33154 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 133 Cycle Base Deletion 33154 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Substitution 33555 67.52 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Insertion 33130 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 134 Cycle Base Deletion 33130 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Substitution 33395 76.61 26.00 26.61 -0.61 After
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Insertion 32979 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 135 Cycle Base Deletion 32979 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Substitution 33372 60.12 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Insertion 32950 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 136 Cycle Base Deletion 32950 2.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Substitution 33343 59.01 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Insertion 32928 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 137 Cycle Base Deletion 32928 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Substitution 33128 66.42 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Insertion 32726 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 138 Cycle Base Deletion 32726 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Substitution 33094 76.90 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Insertion 32684 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 139 Cycle Base Deletion 32684 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Substitution 38832 51.81 28.00 27.94 0.06 After
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Insertion 38832 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 14 Cycle Base Deletion 38832 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Substitution 32996 74.20 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Insertion 32586 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 140 Cycle Base Deletion 32586 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Substitution 32859 72.06 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Insertion 32437 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 141 Cycle Base Deletion 32437 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Substitution 32729 64.97 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Insertion 32258 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 142 Cycle Base Deletion 32258 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Substitution 32635 64.45 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Insertion 32194 0.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 143 Cycle Base Deletion 32194 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Substitution 32588 59.75 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Insertion 32146 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 144 Cycle Base Deletion 32146 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Substitution 32454 56.76 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Insertion 32019 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 145 Cycle Base Deletion 32019 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Substitution 32274 73.89 26.00 26.54 -0.54 After
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Insertion 31876 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 146 Cycle Base Deletion 31876 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 147 Cycle Base Substitution 32300 69.61 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L004 148 Cycle Base Substitution 32048 100.59 25.00 26.44 -1.44 After
REGRESSION.HCC1395_tumor.L004 149 Cycle Base Substitution 32045 78.68 26.00 26.47 -0.47 After
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Substitution 38826 42.37 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Insertion 38826 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 15 Cycle Base Deletion 38826 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 150 Cycle Base Substitution 31930 85.13 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Substitution 38924 37.00 29.00 28.89 0.11 After
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Insertion 38924 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 16 Cycle Base Deletion 38924 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Substitution 38782 25.73 30.00 28.65 1.35 After
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Insertion 38782 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 17 Cycle Base Deletion 38782 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Substitution 38861 21.11 30.00 28.84 1.16 After
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Insertion 38861 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 18 Cycle Base Deletion 38861 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Substitution 38823 29.84 30.00 28.67 1.33 After
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Insertion 38823 2.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 19 Cycle Base Deletion 38823 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 2 Cycle Base Substitution 39081 86.72 27.00 27.29 -0.29 After
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Substitution 38816 30.54 30.00 28.78 1.22 After
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Insertion 38816 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 20 Cycle Base Deletion 38816 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Substitution 38793 37.40 29.00 28.64 0.36 After
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Insertion 38793 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 21 Cycle Base Deletion 38793 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Substitution 38818 29.47 30.00 29.00 1.00 After
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Insertion 38818 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 22 Cycle Base Deletion 38818 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Substitution 38786 33.52 29.00 28.76 0.24 After
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Insertion 38786 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 23 Cycle Base Deletion 38786 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Substitution 38817 36.68 29.00 28.83 0.17 After
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Insertion 38817 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 24 Cycle Base Deletion 38817 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Substitution 38695 26.90 30.00 28.83 1.17 After
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Insertion 38695 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 25 Cycle Base Deletion 38695 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Substitution 38786 38.65 29.00 27.90 1.10 After
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Insertion 38785 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 26 Cycle Base Deletion 38785 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Substitution 38731 39.95 29.00 27.76 1.24 After
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Insertion 38729 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 27 Cycle Base Deletion 38729 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Substitution 38691 38.01 29.00 28.01 0.99 After
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Insertion 38689 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 28 Cycle Base Deletion 38689 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Substitution 38706 30.53 30.00 28.31 1.69 After
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Insertion 38705 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 29 Cycle Base Deletion 38705 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 3 Cycle Base Substitution 38955 103.75 26.00 27.33 -1.33 After
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Substitution 38576 45.48 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Insertion 38572 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 30 Cycle Base Deletion 38572 5.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Substitution 38677 41.48 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Insertion 38673 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 31 Cycle Base Deletion 38673 5.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Substitution 38769 56.73 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Insertion 38764 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 32 Cycle Base Deletion 38764 4.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Substitution 38569 34.80 29.00 27.81 1.19 After
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Insertion 38564 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 33 Cycle Base Deletion 38564 5.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Substitution 38605 36.54 29.00 27.92 1.08 After
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Insertion 38603 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 34 Cycle Base Deletion 38603 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Substitution 38458 36.83 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Insertion 38455 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 35 Cycle Base Deletion 38455 4.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Substitution 38601 50.22 29.00 28.06 0.94 After
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Insertion 38599 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 36 Cycle Base Deletion 38599 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Substitution 38657 40.19 29.00 27.85 1.15 After
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Insertion 38652 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 37 Cycle Base Deletion 38652 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Substitution 38607 49.03 28.00 27.96 0.04 After
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Insertion 38603 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 38 Cycle Base Deletion 38603 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Substitution 38555 40.29 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Insertion 38549 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 39 Cycle Base Deletion 38549 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 4 Cycle Base Substitution 38858 61.95 28.00 27.31 0.69 After
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Substitution 38561 43.67 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Insertion 38554 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 40 Cycle Base Deletion 38554 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Substitution 38575 47.18 28.00 27.82 0.18 After
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Insertion 38569 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 41 Cycle Base Deletion 38569 5.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Substitution 38443 22.95 30.00 28.38 1.62 After
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Insertion 38436 4.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 42 Cycle Base Deletion 38436 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Substitution 38598 50.95 28.00 27.87 0.13 After
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Insertion 38593 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 43 Cycle Base Deletion 38593 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Substitution 38532 39.92 29.00 27.89 1.11 After
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Insertion 38527 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 44 Cycle Base Deletion 38527 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Substitution 38370 54.86 28.00 27.91 0.09 After
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Insertion 38363 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 45 Cycle Base Deletion 38363 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Substitution 38582 38.93 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Insertion 38572 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 46 Cycle Base Deletion 38572 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Substitution 38442 44.20 29.00 28.39 0.61 After
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Insertion 38433 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 47 Cycle Base Deletion 38433 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Substitution 38331 44.18 29.00 28.32 0.68 After
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Insertion 38319 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 48 Cycle Base Deletion 38319 4.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Substitution 38458 39.05 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Insertion 38445 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 49 Cycle Base Deletion 38445 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Substitution 38974 47.71 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Insertion 38974 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 5 Cycle Base Deletion 38974 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Substitution 38449 49.10 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Insertion 38437 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 50 Cycle Base Deletion 38437 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Substitution 38416 65.03 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Insertion 38402 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 51 Cycle Base Deletion 38402 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Substitution 38427 45.72 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Insertion 38410 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 52 Cycle Base Deletion 38410 4.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Substitution 38404 51.62 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Insertion 38382 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 53 Cycle Base Deletion 38382 5.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Substitution 38319 47.96 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Insertion 38297 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 54 Cycle Base Deletion 38297 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Substitution 38371 54.82 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Insertion 38335 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 55 Cycle Base Deletion 38335 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Substitution 38403 41.64 29.00 27.86 1.14 After
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Insertion 38352 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 56 Cycle Base Deletion 38352 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Substitution 38322 63.55 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Insertion 38272 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 57 Cycle Base Deletion 38272 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Substitution 38258 45.40 29.00 28.07 0.93 After
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Insertion 38201 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 58 Cycle Base Deletion 38201 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Substitution 38302 47.02 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Insertion 38242 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 59 Cycle Base Deletion 38242 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Substitution 38835 42.51 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Insertion 38835 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 6 Cycle Base Deletion 38835 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Substitution 38218 50.17 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Insertion 38155 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 60 Cycle Base Deletion 38155 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Substitution 38209 42.49 29.00 27.71 1.29 After
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Insertion 38145 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 61 Cycle Base Deletion 38145 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Substitution 38230 54.01 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Insertion 38160 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 62 Cycle Base Deletion 38160 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Substitution 38129 56.61 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Insertion 38061 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 63 Cycle Base Deletion 38061 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Substitution 38154 43.36 29.00 27.66 1.34 After
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Insertion 38082 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 64 Cycle Base Deletion 38082 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Substitution 38038 61.23 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Insertion 37961 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 65 Cycle Base Deletion 37961 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Substitution 38020 48.51 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Insertion 37929 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 66 Cycle Base Deletion 37929 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Substitution 38173 47.85 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Insertion 38066 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 67 Cycle Base Deletion 38066 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Substitution 38204 53.94 28.00 27.98 0.02 After
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Insertion 38091 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 68 Cycle Base Deletion 38091 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Substitution 38154 56.01 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Insertion 38044 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 69 Cycle Base Deletion 38044 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Substitution 38873 43.70 29.00 28.02 0.98 After
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Insertion 38873 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 7 Cycle Base Deletion 38873 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Substitution 38093 44.92 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Insertion 37981 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 70 Cycle Base Deletion 37981 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Substitution 38097 33.77 29.00 27.49 1.51 After
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Insertion 37984 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 71 Cycle Base Deletion 37984 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Substitution 37880 52.04 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Insertion 37755 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 72 Cycle Base Deletion 37755 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Substitution 38051 68.08 27.00 27.37 -0.37 After
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Insertion 37911 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 73 Cycle Base Deletion 37911 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Substitution 37860 43.77 28.00 27.64 0.36 After
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Insertion 37705 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 74 Cycle Base Deletion 37705 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Substitution 37824 48.57 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Insertion 37663 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 75 Cycle Base Deletion 37663 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Substitution 37867 47.72 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Insertion 37716 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 76 Cycle Base Deletion 37716 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Substitution 37885 58.25 28.00 27.35 0.65 After
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Insertion 37740 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 77 Cycle Base Deletion 37740 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Substitution 37704 58.02 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Insertion 37553 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 78 Cycle Base Deletion 37553 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Substitution 37760 53.92 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Insertion 37587 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 79 Cycle Base Deletion 37587 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Substitution 38863 33.33 30.00 28.32 1.68 After
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Insertion 38863 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 8 Cycle Base Deletion 38863 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Substitution 37613 56.93 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Insertion 37431 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 80 Cycle Base Deletion 37431 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Substitution 37572 71.48 27.00 27.29 -0.29 After
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Insertion 37385 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 81 Cycle Base Deletion 37385 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Substitution 37555 51.78 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Insertion 37359 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 82 Cycle Base Deletion 37359 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Substitution 37497 62.32 28.00 27.31 0.69 After
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Insertion 37312 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 83 Cycle Base Deletion 37312 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Substitution 37435 65.87 27.00 27.43 -0.43 After
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Insertion 37236 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 84 Cycle Base Deletion 37236 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Substitution 37331 59.76 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Insertion 37118 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 85 Cycle Base Deletion 37118 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Substitution 37250 65.33 28.00 27.10 0.90 After
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Insertion 37030 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 86 Cycle Base Deletion 37030 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Substitution 37341 57.89 28.00 27.37 0.63 After
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Insertion 37105 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 87 Cycle Base Deletion 37105 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Substitution 37235 53.41 28.00 27.44 0.56 After
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Insertion 36996 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 88 Cycle Base Deletion 36996 3.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Substitution 37032 66.55 27.00 27.59 -0.59 After
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Insertion 36785 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 89 Cycle Base Deletion 36785 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Substitution 38974 41.89 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Insertion 38974 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 9 Cycle Base Deletion 38974 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Substitution 37029 55.69 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Insertion 36778 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 90 Cycle Base Deletion 36778 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Substitution 36974 60.96 28.00 27.36 0.64 After
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Insertion 36741 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 91 Cycle Base Deletion 36741 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Substitution 37047 66.62 27.00 27.18 -0.18 After
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Insertion 36807 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 92 Cycle Base Deletion 36807 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Substitution 36919 54.08 28.00 27.10 0.90 After
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Insertion 36674 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 93 Cycle Base Deletion 36674 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Substitution 36955 64.16 28.00 27.21 0.79 After
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Insertion 36721 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 94 Cycle Base Deletion 36721 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Substitution 36797 55.55 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Insertion 36528 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 95 Cycle Base Deletion 36528 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Substitution 36786 67.14 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Insertion 36509 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 96 Cycle Base Deletion 36509 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Substitution 36605 57.53 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Insertion 36320 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 97 Cycle Base Deletion 36320 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Substitution 36630 59.51 28.00 27.10 0.90 After
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Insertion 36338 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 98 Cycle Base Deletion 36338 4.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Substitution 36497 60.23 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Insertion 36215 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 99 Cycle Base Deletion 36215 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L004 10 QualityScore Base Substitution 34688 3751.73 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L004 11 QualityScore Base Substitution 15117 1070.51 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L004 12 QualityScore Base Substitution 11803 679.44 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L004 13 QualityScore Base Substitution 21375 742.01 14.00 13.00 1.00 After
REGRESSION.HCC1395_tumor.L004 14 QualityScore Base Substitution 12791 196.90 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L004 15 QualityScore Base Substitution 17119 13.79 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L004 16 QualityScore Base Substitution 8321 4.05 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L004 17 QualityScore Base Substitution 14275 3.25 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L004 22 QualityScore Base Substitution 7979 2.59 24.00 22.00 2.00 After
REGRESSION.HCC1395_tumor.L004 23 QualityScore Base Substitution 39237 206.75 23.00 23.00 0.00 After
REGRESSION.HCC1395_tumor.L004 24 QualityScore Base Substitution 124840 634.17 23.00 24.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 25 QualityScore Base Substitution 102847 294.29 25.00 25.00 0.00 After
REGRESSION.HCC1395_tumor.L004 26 QualityScore Base Substitution 66215 101.49 27.00 26.00 1.00 After
REGRESSION.HCC1395_tumor.L004 28 QualityScore Base Substitution 7936 0.43 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L004 29 QualityScore Base Substitution 68625 110.69 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 30 QualityScore Base Substitution 2542717 1620.81 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L004 31 QualityScore Base Substitution 2871313 1293.28 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L004 32 QualityScore Base Substitution 4684460 1064.93 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L004 33 QualityScore Base Substitution 328358 49.83 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L004 45 QualityScore Base Insertion 11024933 488.89 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L004 45 QualityScore Base Deletion 11024933 1026.76 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L004 7 QualityScore Base Substitution 155 31.00 7.00 7.00 0.00 After
REGRESSION.HCC1395_tumor.L004 8 QualityScore Base Substitution 8145 1408.44 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L004 9 QualityScore Base Substitution 36617 5291.34 8.00 9.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 AA Context Base Substitution 824769 1749.87 27.00 25.55 1.45 After
REGRESSION.HCC1395_tumor.L005 AAA Context Base Insertion 292395 54.70 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L005 AAA Context Base Deletion 292395 186.73 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L005 AAC Context Base Insertion 131349 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAC Context Base Deletion 131349 7.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAG Context Base Insertion 196736 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAG Context Base Deletion 196736 10.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAT Context Base Insertion 171198 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AAT Context Base Deletion 171198 14.55 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 AC Context Base Substitution 528116 1768.33 25.00 24.71 0.29 After
REGRESSION.HCC1395_tumor.L005 ACA Context Base Insertion 203638 19.62 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 ACA Context Base Deletion 203638 37.75 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L005 ACC Context Base Insertion 145944 5.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACC Context Base Deletion 145944 7.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACG Context Base Insertion 30569 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACG Context Base Deletion 30569 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACT Context Base Insertion 156698 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ACT Context Base Deletion 156698 11.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AG Context Base Substitution 795110 584.16 31.00 28.79 2.21 After
REGRESSION.HCC1395_tumor.L005 AGA Context Base Insertion 220602 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGA Context Base Deletion 220602 11.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGC Context Base Insertion 191522 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGC Context Base Deletion 191522 7.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGG Context Base Insertion 226754 13.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGG Context Base Deletion 226754 7.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGT Context Base Insertion 153152 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AGT Context Base Deletion 153152 5.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 AT Context Base Substitution 595124 617.94 30.00 27.61 2.39 After
REGRESSION.HCC1395_tumor.L005 ATA Context Base Insertion 132406 9.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATA Context Base Deletion 132406 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATC Context Base Insertion 120571 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATC Context Base Deletion 120571 8.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATG Context Base Insertion 172379 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATG Context Base Deletion 172379 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATT Context Base Insertion 179796 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 ATT Context Base Deletion 179796 7.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CA Context Base Substitution 852387 1748.57 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L005 CAA Context Base Insertion 170538 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAA Context Base Deletion 170538 9.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAC Context Base Insertion 183312 22.54 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 CAC Context Base Deletion 183312 34.31 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L005 CAG Context Base Insertion 290896 7.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAG Context Base Deletion 290896 12.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAT Context Base Insertion 168731 5.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CAT Context Base Deletion 168731 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CC Context Base Substitution 763420 2435.13 25.00 24.58 0.42 After
REGRESSION.HCC1395_tumor.L005 CCA Context Base Insertion 244866 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCA Context Base Deletion 244866 5.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCC Context Base Insertion 212685 9.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCC Context Base Deletion 212685 16.00 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 CCG Context Base Insertion 53196 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCG Context Base Deletion 53196 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCT Context Base Insertion 242381 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CCT Context Base Deletion 242381 10.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CG Context Base Substitution 159875 568.26 24.00 24.84 -0.84 After
REGRESSION.HCC1395_tumor.L005 CGA Context Base Insertion 56130 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGA Context Base Deletion 56130 0.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGC Context Base Insertion 80585 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGC Context Base Deletion 80585 6.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGG Context Base Insertion 97008 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGG Context Base Deletion 97008 6.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGT Context Base Insertion 62430 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CGT Context Base Deletion 62430 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CT Context Base Substitution 836137 426.79 32.00 29.36 2.64 After
REGRESSION.HCC1395_tumor.L005 CTA Context Base Insertion 96093 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTA Context Base Deletion 96093 5.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTC Context Base Insertion 201409 5.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTC Context Base Deletion 201409 16.08 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 CTG Context Base Insertion 292287 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTG Context Base Deletion 292287 10.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTT Context Base Insertion 207664 7.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 CTT Context Base Deletion 207664 10.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GA Context Base Substitution 697874 1051.95 28.00 26.53 1.47 After
REGRESSION.HCC1395_tumor.L005 GAA Context Base Insertion 206909 5.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAA Context Base Deletion 206909 9.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAC Context Base Insertion 117230 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAC Context Base Deletion 117230 6.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAG Context Base Insertion 206156 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAG Context Base Deletion 206156 10.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAT Context Base Insertion 124700 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GAT Context Base Deletion 124700 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GC Context Base Substitution 661127 1468.61 27.00 25.91 1.09 After
REGRESSION.HCC1395_tumor.L005 GCA Context Base Insertion 203827 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCA Context Base Deletion 203827 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCC Context Base Insertion 199012 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCC Context Base Deletion 199012 8.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCG Context Base Insertion 48735 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCG Context Base Deletion 48735 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCT Context Base Insertion 209271 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GCT Context Base Deletion 209271 5.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GG Context Base Substitution 788174 764.02 30.00 27.69 2.31 After
REGRESSION.HCC1395_tumor.L005 GGA Context Base Insertion 213557 18.78 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 GGA Context Base Deletion 213557 14.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGC Context Base Insertion 196148 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGC Context Base Deletion 196148 4.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGG Context Base Insertion 218048 11.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGG Context Base Deletion 218048 24.52 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 GGT Context Base Insertion 157848 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GGT Context Base Deletion 157848 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GT Context Base Substitution 586584 1018.55 28.00 26.92 1.08 After
REGRESSION.HCC1395_tumor.L005 GTA Context Base Insertion 100086 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTA Context Base Deletion 100086 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTC Context Base Insertion 125820 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTC Context Base Deletion 125820 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTG Context Base Insertion 199663 11.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTG Context Base Deletion 199663 29.97 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 GTT Context Base Insertion 147684 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 GTT Context Base Deletion 147684 10.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TA Context Base Substitution 477248 1201.77 26.00 25.02 0.98 After
REGRESSION.HCC1395_tumor.L005 TAA Context Base Insertion 147680 10.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAA Context Base Deletion 147680 11.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAC Context Base Insertion 92862 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAC Context Base Deletion 92862 5.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAG Context Base Insertion 95379 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAG Context Base Deletion 95379 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAT Context Base Insertion 126198 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TAT Context Base Deletion 126198 5.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TC Context Base Substitution 643262 1567.85 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L005 TCA Context Base Insertion 193417 6.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCA Context Base Deletion 193417 13.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCC Context Base Insertion 200692 34.26 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 TCC Context Base Deletion 200692 8.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCG Context Base Insertion 26221 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCG Context Base Deletion 26221 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCT Context Base Insertion 221958 7.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TCT Context Base Deletion 221958 12.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TG Context Base Substitution 839648 354.51 33.00 29.39 3.61 After
REGRESSION.HCC1395_tumor.L005 TGA Context Base Insertion 202302 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGA Context Base Deletion 202302 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGC Context Base Insertion 188683 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGC Context Base Deletion 188683 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGG Context Base Insertion 240539 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGG Context Base Deletion 240539 6.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGT Context Base Insertion 209369 13.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TGT Context Base Deletion 209369 32.31 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 TT Context Base Substitution 830701 910.11 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L005 TTA Context Base Insertion 145083 6.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTA Context Base Deletion 145083 7.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTC Context Base Insertion 191512 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTC Context Base Deletion 191512 13.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTG Context Base Insertion 169411 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTG Context Base Deletion 169411 7.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 TTT Context Base Insertion 290073 46.00 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L005 TTT Context Base Deletion 290073 170.37 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L005 -1 Cycle Base Substitution 38383 140.81 24.00 23.51 0.49 After
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Substitution 38711 60.32 28.00 27.42 0.58 After
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Insertion 38711 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -10 Cycle Base Deletion 38711 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Substitution 36106 66.25 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Insertion 35785 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -100 Cycle Base Deletion 35785 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Substitution 36113 99.94 26.00 25.93 0.07 After
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Insertion 35783 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -101 Cycle Base Deletion 35783 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Substitution 35996 69.43 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Insertion 35666 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -102 Cycle Base Deletion 35666 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Substitution 35956 86.08 26.00 25.84 0.16 After
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Insertion 35636 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -103 Cycle Base Deletion 35636 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Substitution 35811 75.07 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Insertion 35502 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -104 Cycle Base Deletion 35502 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Substitution 35620 68.05 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Insertion 35302 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -105 Cycle Base Deletion 35302 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Substitution 35658 73.34 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Insertion 35343 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -106 Cycle Base Deletion 35343 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Substitution 35447 75.33 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Insertion 35121 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -107 Cycle Base Deletion 35121 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Substitution 35481 80.56 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Insertion 35153 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -108 Cycle Base Deletion 35153 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Substitution 35447 73.75 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Insertion 35130 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -109 Cycle Base Deletion 35130 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Substitution 38541 55.92 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Insertion 38541 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -11 Cycle Base Deletion 38541 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Substitution 35356 79.53 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Insertion 35023 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -110 Cycle Base Deletion 35023 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Substitution 35289 70.50 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Insertion 34961 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -111 Cycle Base Deletion 34961 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Substitution 35212 64.96 27.00 26.32 0.68 After
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Insertion 34863 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -112 Cycle Base Deletion 34863 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Substitution 35086 90.82 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Insertion 34735 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -113 Cycle Base Deletion 34735 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Substitution 34891 86.51 26.00 26.26 -0.26 After
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Insertion 34556 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -114 Cycle Base Deletion 34556 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Substitution 34860 93.80 26.00 26.29 -0.29 After
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Insertion 34502 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -115 Cycle Base Deletion 34502 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Substitution 34762 76.97 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Insertion 34404 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -116 Cycle Base Deletion 34404 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Substitution 34796 85.76 26.00 25.73 0.27 After
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Insertion 34432 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -117 Cycle Base Deletion 34432 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Substitution 34643 90.06 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Insertion 34277 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -118 Cycle Base Deletion 34277 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Substitution 34610 83.89 26.00 26.25 -0.25 After
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Insertion 34253 0.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -119 Cycle Base Deletion 34253 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Substitution 38620 61.24 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Insertion 38620 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -12 Cycle Base Deletion 38620 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Substitution 34522 72.98 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Insertion 34170 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -120 Cycle Base Deletion 34170 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Substitution 34387 63.70 27.00 26.23 0.77 After
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Insertion 34039 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -121 Cycle Base Deletion 34039 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Substitution 34335 75.70 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Insertion 33991 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -122 Cycle Base Deletion 33991 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Substitution 34262 75.02 27.00 26.17 0.83 After
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Insertion 33897 0.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -123 Cycle Base Deletion 33897 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Substitution 34171 103.43 25.00 25.59 -0.59 After
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Insertion 33786 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -124 Cycle Base Deletion 33786 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Substitution 34169 74.33 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Insertion 33779 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -125 Cycle Base Deletion 33779 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Substitution 33933 62.81 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Insertion 33554 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -126 Cycle Base Deletion 33554 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Substitution 33809 65.27 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Insertion 33415 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -127 Cycle Base Deletion 33415 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Substitution 33769 71.21 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Insertion 33363 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -128 Cycle Base Deletion 33363 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Substitution 33752 82.00 26.00 26.13 -0.13 After
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Insertion 33347 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -129 Cycle Base Deletion 33347 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Substitution 38538 63.41 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Insertion 38538 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -13 Cycle Base Deletion 38538 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Substitution 33499 77.91 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Insertion 33093 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -130 Cycle Base Deletion 33093 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Substitution 33480 81.20 26.00 26.06 -0.06 After
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Insertion 33059 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -131 Cycle Base Deletion 33059 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Substitution 33330 78.47 26.00 26.09 -0.09 After
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Insertion 32931 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -132 Cycle Base Deletion 32931 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Substitution 33274 71.49 27.00 26.17 0.83 After
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Insertion 32877 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -133 Cycle Base Deletion 32877 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Substitution 33174 81.84 26.00 26.03 -0.03 After
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Insertion 32760 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -134 Cycle Base Deletion 32760 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Substitution 33049 87.55 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Insertion 32642 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -135 Cycle Base Deletion 32642 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Substitution 32972 56.44 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Insertion 32557 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -136 Cycle Base Deletion 32557 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Substitution 32848 83.67 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Insertion 32418 0.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -137 Cycle Base Deletion 32418 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Substitution 32742 76.32 26.00 25.51 0.49 After
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Insertion 32272 0.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -138 Cycle Base Deletion 32272 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Substitution 32714 66.49 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Insertion 32246 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -139 Cycle Base Deletion 32246 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Substitution 38678 52.24 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Insertion 38678 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -14 Cycle Base Deletion 38678 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Substitution 32567 62.96 27.00 26.21 0.79 After
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Insertion 32061 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -140 Cycle Base Deletion 32061 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Substitution 32402 56.04 27.00 26.17 0.83 After
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Insertion 31874 0.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -141 Cycle Base Deletion 31874 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Substitution 32336 49.16 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Insertion 31756 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -142 Cycle Base Deletion 31756 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Substitution 32228 55.60 27.00 26.22 0.78 After
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Insertion 31577 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -143 Cycle Base Deletion 31577 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Substitution 32004 46.33 28.00 26.40 1.60 After
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Insertion 31299 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -144 Cycle Base Deletion 31299 0.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Substitution 32019 52.22 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Insertion 24735 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -145 Cycle Base Deletion 24735 0.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Substitution 31819 21.36 28.00 26.31 1.69 After
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Insertion 24653 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -146 Cycle Base Deletion 24653 0.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -147 Cycle Base Substitution 31680 28.51 26.00 23.04 2.96 After
REGRESSION.HCC1395_tumor.L005 -148 Cycle Base Substitution 31420 27.74 23.00 16.04 6.96 After
REGRESSION.HCC1395_tumor.L005 -149 Cycle Base Substitution 19520 23.01 22.00 14.09 7.91 After
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Substitution 38658 41.65 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Insertion 38658 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -15 Cycle Base Deletion 38658 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -150 Cycle Base Substitution 6846 14.70 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Substitution 38694 53.79 28.00 27.59 0.41 After
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Insertion 38694 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -16 Cycle Base Deletion 38694 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Substitution 38619 56.05 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Insertion 38619 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -17 Cycle Base Deletion 38619 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Substitution 38602 45.46 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Insertion 38602 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -18 Cycle Base Deletion 38602 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Substitution 38479 49.60 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Insertion 38479 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -19 Cycle Base Deletion 38479 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -2 Cycle Base Substitution 38802 125.39 25.00 25.62 -0.62 After
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Substitution 38532 52.14 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Insertion 38532 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -20 Cycle Base Deletion 38532 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Substitution 38478 53.18 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Insertion 38478 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -21 Cycle Base Deletion 38478 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Substitution 38514 42.04 29.00 27.68 1.32 After
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Insertion 38514 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -22 Cycle Base Deletion 38514 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Substitution 38464 43.99 29.00 27.69 1.31 After
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Insertion 38464 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -23 Cycle Base Deletion 38464 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Substitution 38517 57.42 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Insertion 38516 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -24 Cycle Base Deletion 38516 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Substitution 38480 50.01 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Insertion 38479 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -25 Cycle Base Deletion 38479 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Substitution 38482 73.84 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Insertion 38482 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -26 Cycle Base Deletion 38482 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Substitution 38424 47.84 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Insertion 38423 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -27 Cycle Base Deletion 38423 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Substitution 38463 67.45 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Insertion 38459 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -28 Cycle Base Deletion 38459 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Substitution 38477 65.72 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Insertion 38470 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -29 Cycle Base Deletion 38470 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -3 Cycle Base Substitution 38900 125.73 25.00 25.80 -0.80 After
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Substitution 38519 61.70 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Insertion 38512 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -30 Cycle Base Deletion 38512 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Substitution 38376 56.56 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Insertion 38367 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -31 Cycle Base Deletion 38367 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Substitution 38452 53.23 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Insertion 38448 5.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -32 Cycle Base Deletion 38448 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Substitution 38414 58.68 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Insertion 38409 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -33 Cycle Base Deletion 38409 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Substitution 38466 50.18 28.00 26.81 1.19 After
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Insertion 38462 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -34 Cycle Base Deletion 38462 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Substitution 38430 55.69 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Insertion 38426 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -35 Cycle Base Deletion 38426 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Substitution 38323 53.77 28.00 26.76 1.24 After
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Insertion 38319 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -36 Cycle Base Deletion 38319 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Substitution 38389 48.05 28.00 26.86 1.14 After
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Insertion 38386 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -37 Cycle Base Deletion 38386 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Substitution 38383 43.76 29.00 27.33 1.67 After
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Insertion 38380 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -38 Cycle Base Deletion 38380 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Substitution 38418 64.68 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Insertion 38417 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -39 Cycle Base Deletion 38417 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -4 Cycle Base Substitution 38741 76.75 27.00 25.99 1.01 After
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Substitution 38417 65.67 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Insertion 38413 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -40 Cycle Base Deletion 38413 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Substitution 38349 49.09 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Insertion 38345 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -41 Cycle Base Deletion 38345 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Substitution 38285 58.88 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Insertion 38279 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -42 Cycle Base Deletion 38279 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Substitution 38308 49.48 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Insertion 38299 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -43 Cycle Base Deletion 38299 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Substitution 38184 62.96 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Insertion 38178 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -44 Cycle Base Deletion 38178 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Substitution 38158 61.13 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Insertion 38150 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -45 Cycle Base Deletion 38150 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Substitution 38274 59.52 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Insertion 38263 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -46 Cycle Base Deletion 38263 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Substitution 38288 62.55 28.00 27.14 0.86 After
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Insertion 38275 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -47 Cycle Base Deletion 38275 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Substitution 38219 58.51 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Insertion 38203 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -48 Cycle Base Deletion 38203 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Substitution 38281 54.05 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Insertion 38261 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -49 Cycle Base Deletion 38261 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Substitution 38815 53.68 28.00 26.81 1.19 After
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Insertion 38815 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -5 Cycle Base Deletion 38815 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Substitution 38249 69.98 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Insertion 38230 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -50 Cycle Base Deletion 38230 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Substitution 38141 62.36 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Insertion 38122 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -51 Cycle Base Deletion 38122 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Substitution 38160 58.99 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Insertion 38129 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -52 Cycle Base Deletion 38129 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Substitution 38204 56.40 28.00 26.83 1.17 After
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Insertion 38172 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -53 Cycle Base Deletion 38172 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Substitution 38320 57.69 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Insertion 38276 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -54 Cycle Base Deletion 38276 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Substitution 38176 80.17 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Insertion 38130 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -55 Cycle Base Deletion 38130 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Substitution 38116 78.96 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Insertion 38068 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -56 Cycle Base Deletion 38068 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Substitution 38207 59.94 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Insertion 38163 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -57 Cycle Base Deletion 38163 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Substitution 38085 72.65 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Insertion 38035 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -58 Cycle Base Deletion 38035 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Substitution 38007 62.59 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Insertion 37953 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -59 Cycle Base Deletion 37953 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Substitution 38734 64.40 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Insertion 38734 0.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -6 Cycle Base Deletion 38734 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Substitution 38058 69.58 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Insertion 38007 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -60 Cycle Base Deletion 38007 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Substitution 38154 68.42 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Insertion 38092 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -61 Cycle Base Deletion 38092 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Substitution 38111 64.99 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Insertion 38040 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -62 Cycle Base Deletion 38040 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Substitution 37994 64.30 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Insertion 37921 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -63 Cycle Base Deletion 37921 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Substitution 37948 69.01 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Insertion 37883 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -64 Cycle Base Deletion 37883 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Substitution 37951 63.32 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Insertion 37885 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -65 Cycle Base Deletion 37885 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Substitution 37954 76.20 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Insertion 37866 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -66 Cycle Base Deletion 37866 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Substitution 38028 66.22 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Insertion 37942 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -67 Cycle Base Deletion 37942 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Substitution 38032 59.92 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Insertion 37924 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -68 Cycle Base Deletion 37924 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Substitution 37852 58.91 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Insertion 37753 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -69 Cycle Base Deletion 37753 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Substitution 38802 60.97 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Insertion 38802 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -7 Cycle Base Deletion 38802 2.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Substitution 37931 71.32 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Insertion 37813 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -70 Cycle Base Deletion 37813 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Substitution 37787 68.44 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Insertion 37662 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -71 Cycle Base Deletion 37662 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Substitution 37755 58.08 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Insertion 37620 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -72 Cycle Base Deletion 37620 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Substitution 37658 47.37 28.00 26.97 1.03 After
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Insertion 37524 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -73 Cycle Base Deletion 37524 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Substitution 37685 66.38 27.00 26.83 0.17 After
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Insertion 37543 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -74 Cycle Base Deletion 37543 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Substitution 37591 64.34 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Insertion 37450 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -75 Cycle Base Deletion 37450 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Substitution 37542 77.41 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Insertion 37391 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -76 Cycle Base Deletion 37391 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Substitution 37529 65.74 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Insertion 37374 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -77 Cycle Base Deletion 37374 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Substitution 37595 71.18 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Insertion 37429 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -78 Cycle Base Deletion 37429 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Substitution 37676 69.54 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Insertion 37494 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -79 Cycle Base Deletion 37494 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Substitution 38697 63.81 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Insertion 38697 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -8 Cycle Base Deletion 38697 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Substitution 37437 72.46 27.00 27.11 -0.11 After
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Insertion 37255 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -80 Cycle Base Deletion 37255 4.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Substitution 37345 54.99 28.00 26.76 1.24 After
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Insertion 37157 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -81 Cycle Base Deletion 37157 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Substitution 37333 76.92 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Insertion 37127 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -82 Cycle Base Deletion 37127 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Substitution 37257 75.45 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Insertion 37044 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -83 Cycle Base Deletion 37044 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Substitution 37126 68.67 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Insertion 36906 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -84 Cycle Base Deletion 36906 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Substitution 37142 81.77 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Insertion 36907 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -85 Cycle Base Deletion 36907 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Substitution 37287 62.68 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Insertion 37047 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -86 Cycle Base Deletion 37047 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Substitution 37176 80.93 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Insertion 36947 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -87 Cycle Base Deletion 36947 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Substitution 36988 70.36 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Insertion 36741 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -88 Cycle Base Deletion 36741 2.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Substitution 36961 78.81 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Insertion 36714 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -89 Cycle Base Deletion 36714 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Substitution 38661 58.31 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Insertion 38661 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -9 Cycle Base Deletion 38661 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Substitution 36885 61.67 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Insertion 36626 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -90 Cycle Base Deletion 36626 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Substitution 36779 83.00 26.00 26.29 -0.29 After
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Insertion 36501 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -91 Cycle Base Deletion 36501 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Substitution 36782 73.72 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Insertion 36514 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -92 Cycle Base Deletion 36514 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Substitution 36717 73.53 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Insertion 36445 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -93 Cycle Base Deletion 36445 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Substitution 36670 83.99 26.00 25.80 0.20 After
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Insertion 36360 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -94 Cycle Base Deletion 36360 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Substitution 36405 72.13 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Insertion 36105 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -95 Cycle Base Deletion 36105 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Substitution 36383 72.27 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Insertion 36064 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -96 Cycle Base Deletion 36064 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Substitution 36352 86.28 26.00 26.55 -0.55 After
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Insertion 36023 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -97 Cycle Base Deletion 36023 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Substitution 36102 70.54 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Insertion 35780 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -98 Cycle Base Deletion 35780 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Substitution 36219 72.11 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Insertion 35888 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 -99 Cycle Base Deletion 35888 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 1 Cycle Base Substitution 38379 83.19 27.00 26.06 0.94 After
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Substitution 38701 34.93 29.00 28.18 0.82 After
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Insertion 38701 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 10 Cycle Base Deletion 38701 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Substitution 36272 63.95 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Insertion 35961 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 100 Cycle Base Deletion 35961 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Substitution 36157 61.07 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Insertion 35840 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 101 Cycle Base Deletion 35840 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Substitution 36103 60.13 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Insertion 35783 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 102 Cycle Base Deletion 35783 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Substitution 35896 53.76 28.00 26.85 1.15 After
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Insertion 35585 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 103 Cycle Base Deletion 35585 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Substitution 35848 56.81 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Insertion 35537 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 104 Cycle Base Deletion 35537 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Substitution 35722 58.53 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Insertion 35409 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 105 Cycle Base Deletion 35409 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Substitution 35706 73.35 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Insertion 35384 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 106 Cycle Base Deletion 35384 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Substitution 35719 60.70 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Insertion 35419 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 107 Cycle Base Deletion 35419 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Substitution 35605 84.16 26.00 26.59 -0.59 After
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Insertion 35284 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 108 Cycle Base Deletion 35284 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Substitution 35536 74.04 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Insertion 35221 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 109 Cycle Base Deletion 35221 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Substitution 38693 61.42 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Insertion 38693 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 11 Cycle Base Deletion 38693 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Substitution 35421 74.06 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Insertion 35092 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 110 Cycle Base Deletion 35092 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Substitution 35281 68.82 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Insertion 34943 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 111 Cycle Base Deletion 34943 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Substitution 35088 61.31 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Insertion 34737 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 112 Cycle Base Deletion 34737 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Substitution 35145 73.66 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Insertion 34801 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 113 Cycle Base Deletion 34801 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Substitution 35061 69.45 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Insertion 34721 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 114 Cycle Base Deletion 34721 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Substitution 35063 58.24 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Insertion 34722 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 115 Cycle Base Deletion 34722 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Substitution 34853 79.92 26.00 26.54 -0.54 After
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Insertion 34522 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 116 Cycle Base Deletion 34522 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Substitution 34824 65.29 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Insertion 34493 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 117 Cycle Base Deletion 34493 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Substitution 34683 66.64 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Insertion 34340 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 118 Cycle Base Deletion 34340 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Substitution 34629 86.97 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Insertion 34307 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 119 Cycle Base Deletion 34307 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Substitution 38590 56.63 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Insertion 38590 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 12 Cycle Base Deletion 38590 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Substitution 34512 77.44 26.00 26.38 -0.38 After
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Insertion 34206 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 120 Cycle Base Deletion 34206 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Substitution 34495 67.48 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Insertion 34166 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 121 Cycle Base Deletion 34166 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Substitution 34434 66.85 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Insertion 34107 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 122 Cycle Base Deletion 34107 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Substitution 34293 76.06 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Insertion 33918 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 123 Cycle Base Deletion 33918 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Substitution 34309 78.14 26.00 26.59 -0.59 After
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Insertion 33920 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 124 Cycle Base Deletion 33920 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Substitution 34133 61.21 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Insertion 33755 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 125 Cycle Base Deletion 33755 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Substitution 34071 72.29 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Insertion 33695 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 126 Cycle Base Deletion 33695 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Substitution 34075 82.80 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Insertion 33693 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 127 Cycle Base Deletion 33693 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Substitution 33881 82.88 26.00 26.54 -0.54 After
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Insertion 33509 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 128 Cycle Base Deletion 33509 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Substitution 33805 89.73 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Insertion 33411 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 129 Cycle Base Deletion 33411 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Substitution 38550 41.20 29.00 27.47 1.53 After
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Insertion 38550 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 13 Cycle Base Deletion 38550 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Substitution 33673 63.19 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Insertion 33288 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 130 Cycle Base Deletion 33288 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Substitution 33562 59.18 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Insertion 33175 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 131 Cycle Base Deletion 33175 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Substitution 33511 76.67 26.00 26.45 -0.45 After
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Insertion 33128 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 132 Cycle Base Deletion 33128 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Substitution 33392 62.86 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Insertion 33011 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 133 Cycle Base Deletion 33011 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Substitution 33301 67.83 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Insertion 32903 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 134 Cycle Base Deletion 32903 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Substitution 33268 53.61 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Insertion 32877 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 135 Cycle Base Deletion 32877 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Substitution 33170 67.64 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Insertion 32769 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 136 Cycle Base Deletion 32769 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Substitution 33014 59.41 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Insertion 32616 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 137 Cycle Base Deletion 32616 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Substitution 32979 68.06 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Insertion 32579 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 138 Cycle Base Deletion 32579 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Substitution 32922 74.39 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Insertion 32492 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 139 Cycle Base Deletion 32492 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Substitution 38655 44.13 29.00 27.54 1.46 After
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Insertion 38655 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 14 Cycle Base Deletion 38655 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Substitution 32782 76.13 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Insertion 32361 0.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 140 Cycle Base Deletion 32361 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Substitution 32652 82.85 26.00 25.90 0.10 After
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Insertion 32229 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 141 Cycle Base Deletion 32229 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Substitution 32529 76.90 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Insertion 32101 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 142 Cycle Base Deletion 32101 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Substitution 32478 68.93 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Insertion 32043 0.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 143 Cycle Base Deletion 32043 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Substitution 32289 67.49 27.00 26.28 0.72 After
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Insertion 31827 0.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 144 Cycle Base Deletion 31827 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Substitution 32264 65.56 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Insertion 31796 0.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 145 Cycle Base Deletion 31796 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Substitution 32184 71.16 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Insertion 31745 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 146 Cycle Base Deletion 31745 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 147 Cycle Base Substitution 32047 77.62 26.00 26.58 -0.58 After
REGRESSION.HCC1395_tumor.L005 148 Cycle Base Substitution 31872 73.37 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L005 149 Cycle Base Substitution 31769 73.18 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Substitution 38549 39.13 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Insertion 38549 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 15 Cycle Base Deletion 38549 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 150 Cycle Base Substitution 31694 63.73 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Substitution 38565 33.81 29.00 28.61 0.39 After
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Insertion 38565 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 16 Cycle Base Deletion 38565 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Substitution 38625 27.26 30.00 28.71 1.29 After
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Insertion 38625 1.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 17 Cycle Base Deletion 38625 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Substitution 38532 26.91 30.00 28.52 1.48 After
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Insertion 38532 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 18 Cycle Base Deletion 38532 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Substitution 38619 20.91 30.00 28.49 1.51 After
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Insertion 38619 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 19 Cycle Base Deletion 38619 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 2 Cycle Base Substitution 38762 90.60 26.00 26.86 -0.86 After
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Substitution 38567 26.94 30.00 28.53 1.47 After
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Insertion 38567 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 20 Cycle Base Deletion 38567 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Substitution 38457 35.04 29.00 28.67 0.33 After
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Insertion 38457 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 21 Cycle Base Deletion 38457 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Substitution 38535 26.04 30.00 28.68 1.32 After
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Insertion 38535 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 22 Cycle Base Deletion 38535 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Substitution 38513 34.24 29.00 28.53 0.47 After
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Insertion 38513 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 23 Cycle Base Deletion 38513 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Substitution 38394 34.01 29.00 28.67 0.33 After
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Insertion 38394 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 24 Cycle Base Deletion 38394 5.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Substitution 38521 16.50 30.00 28.58 1.42 After
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Insertion 38521 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 25 Cycle Base Deletion 38521 5.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Substitution 38526 35.16 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Insertion 38526 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 26 Cycle Base Deletion 38526 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Substitution 38330 37.93 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Insertion 38329 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 27 Cycle Base Deletion 38329 5.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Substitution 38434 42.38 29.00 27.57 1.43 After
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Insertion 38434 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 28 Cycle Base Deletion 38434 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Substitution 38346 43.65 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Insertion 38345 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 29 Cycle Base Deletion 38345 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 3 Cycle Base Substitution 38856 114.23 26.00 27.19 -1.19 After
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Substitution 38364 43.78 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Insertion 38363 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 30 Cycle Base Deletion 38363 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Substitution 38462 44.11 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Insertion 38462 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 31 Cycle Base Deletion 38462 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Substitution 38283 66.32 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Insertion 38283 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 32 Cycle Base Deletion 38283 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Substitution 38299 34.62 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Insertion 38298 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 33 Cycle Base Deletion 38298 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Substitution 38376 45.32 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Insertion 38373 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 34 Cycle Base Deletion 38373 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Substitution 38431 33.33 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Insertion 38427 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 35 Cycle Base Deletion 38427 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Substitution 38448 57.24 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Insertion 38443 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 36 Cycle Base Deletion 38443 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Substitution 38363 39.22 29.00 28.03 0.97 After
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Insertion 38359 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 37 Cycle Base Deletion 38359 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Substitution 38249 52.37 28.00 27.85 0.15 After
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Insertion 38248 2.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 38 Cycle Base Deletion 38248 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Substitution 38243 34.68 29.00 27.94 1.06 After
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Insertion 38243 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 39 Cycle Base Deletion 38243 4.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 4 Cycle Base Substitution 38710 52.71 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Substitution 38223 37.35 29.00 27.88 1.12 After
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Insertion 38221 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 40 Cycle Base Deletion 38221 5.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Substitution 38229 46.61 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Insertion 38225 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 41 Cycle Base Deletion 38225 5.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Substitution 38237 40.48 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Insertion 38230 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 42 Cycle Base Deletion 38230 5.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Substitution 38371 37.63 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Insertion 38363 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 43 Cycle Base Deletion 38363 4.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Substitution 38263 51.36 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Insertion 38253 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 44 Cycle Base Deletion 38253 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Substitution 38171 49.14 28.00 27.89 0.11 After
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Insertion 38160 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 45 Cycle Base Deletion 38160 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Substitution 38281 33.56 29.00 28.25 0.75 After
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Insertion 38271 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 46 Cycle Base Deletion 38271 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Substitution 38223 42.35 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Insertion 38210 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 47 Cycle Base Deletion 38210 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Substitution 38227 38.06 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Insertion 38213 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 48 Cycle Base Deletion 38213 3.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Substitution 38133 42.79 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Insertion 38118 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 49 Cycle Base Deletion 38118 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Substitution 38718 50.01 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Insertion 38718 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 5 Cycle Base Deletion 38718 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Substitution 38233 40.94 29.00 27.53 1.47 After
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Insertion 38212 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 50 Cycle Base Deletion 38212 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Substitution 38244 45.18 28.00 27.85 0.15 After
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Insertion 38222 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 51 Cycle Base Deletion 38222 4.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Substitution 38263 44.68 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Insertion 38242 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 52 Cycle Base Deletion 38242 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Substitution 38195 44.87 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Insertion 38167 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 53 Cycle Base Deletion 38167 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Substitution 38097 37.26 29.00 27.68 1.32 After
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Insertion 38061 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 54 Cycle Base Deletion 38061 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Substitution 38209 43.73 29.00 27.79 1.21 After
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Insertion 38168 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 55 Cycle Base Deletion 38168 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Substitution 38035 42.46 29.00 27.91 1.09 After
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Insertion 37994 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 56 Cycle Base Deletion 37994 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Substitution 38079 67.03 27.00 27.84 -0.84 After
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Insertion 38042 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 57 Cycle Base Deletion 38042 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Substitution 38092 51.69 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Insertion 38055 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 58 Cycle Base Deletion 38055 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Substitution 38078 42.69 29.00 27.48 1.52 After
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Insertion 38032 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 59 Cycle Base Deletion 38032 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Substitution 38676 37.29 29.00 27.55 1.45 After
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Insertion 38676 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 6 Cycle Base Deletion 38676 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Substitution 38140 45.61 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Insertion 38088 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 60 Cycle Base Deletion 38088 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Substitution 38068 40.07 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Insertion 38002 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 61 Cycle Base Deletion 38002 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Substitution 37990 53.10 28.00 27.56 0.44 After
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Insertion 37922 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 62 Cycle Base Deletion 37922 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Substitution 38095 60.75 28.00 27.41 0.59 After
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Insertion 38019 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 63 Cycle Base Deletion 38019 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Substitution 38000 56.62 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Insertion 37930 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 64 Cycle Base Deletion 37930 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Substitution 37929 52.25 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Insertion 37854 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 65 Cycle Base Deletion 37854 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Substitution 38007 37.61 29.00 27.51 1.49 After
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Insertion 37927 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 66 Cycle Base Deletion 37927 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Substitution 37952 50.53 28.00 27.58 0.42 After
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Insertion 37869 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 67 Cycle Base Deletion 37869 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Substitution 37929 47.91 28.00 27.42 0.58 After
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Insertion 37836 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 68 Cycle Base Deletion 37836 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Substitution 37928 50.48 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Insertion 37832 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 69 Cycle Base Deletion 37832 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Substitution 38700 40.98 29.00 27.44 1.56 After
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Insertion 38700 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 7 Cycle Base Deletion 38700 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Substitution 37841 46.13 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Insertion 37726 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 70 Cycle Base Deletion 37726 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Substitution 37796 57.32 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Insertion 37677 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 71 Cycle Base Deletion 37677 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Substitution 37761 58.20 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Insertion 37639 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 72 Cycle Base Deletion 37639 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Substitution 37707 73.27 27.00 27.16 -0.16 After
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Insertion 37569 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 73 Cycle Base Deletion 37569 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Substitution 37784 54.47 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Insertion 37646 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 74 Cycle Base Deletion 37646 5.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Substitution 37740 55.67 28.00 27.86 0.14 After
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Insertion 37594 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 75 Cycle Base Deletion 37594 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Substitution 37682 52.72 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Insertion 37523 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 76 Cycle Base Deletion 37523 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Substitution 37527 65.42 28.00 27.36 0.64 After
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Insertion 37367 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 77 Cycle Base Deletion 37367 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Substitution 37549 57.21 28.00 27.36 0.64 After
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Insertion 37381 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 78 Cycle Base Deletion 37381 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Substitution 37493 67.04 27.00 27.29 -0.29 After
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Insertion 37306 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 79 Cycle Base Deletion 37306 4.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Substitution 38800 53.07 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Insertion 38800 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 8 Cycle Base Deletion 38800 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Substitution 37459 52.05 28.00 27.33 0.67 After
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Insertion 37277 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 80 Cycle Base Deletion 37277 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Substitution 37406 46.74 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Insertion 37214 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 81 Cycle Base Deletion 37214 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Substitution 37340 60.69 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Insertion 37144 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 82 Cycle Base Deletion 37144 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Substitution 37186 58.11 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Insertion 36978 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 83 Cycle Base Deletion 36978 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Substitution 37365 80.70 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Insertion 37140 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 84 Cycle Base Deletion 37140 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Substitution 37197 62.19 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Insertion 36974 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 85 Cycle Base Deletion 36974 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Substitution 37085 62.10 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Insertion 36859 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 86 Cycle Base Deletion 36859 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Substitution 37278 49.51 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Insertion 37038 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 87 Cycle Base Deletion 37038 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Substitution 37006 72.24 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Insertion 36757 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 88 Cycle Base Deletion 36757 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Substitution 37116 68.82 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Insertion 36871 2.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 89 Cycle Base Deletion 36871 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Substitution 38622 39.59 29.00 27.76 1.24 After
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Insertion 38622 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 9 Cycle Base Deletion 38622 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Substitution 37080 73.55 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Insertion 36814 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 90 Cycle Base Deletion 36814 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Substitution 36879 57.86 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Insertion 36609 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 91 Cycle Base Deletion 36609 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Substitution 36788 54.96 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Insertion 36509 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 92 Cycle Base Deletion 36509 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Substitution 36631 56.07 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Insertion 36353 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 93 Cycle Base Deletion 36353 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Substitution 36745 48.48 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Insertion 36442 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 94 Cycle Base Deletion 36442 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Substitution 36612 69.96 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Insertion 36305 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 95 Cycle Base Deletion 36305 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Substitution 36435 57.31 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Insertion 36119 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 96 Cycle Base Deletion 36119 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Substitution 36417 67.51 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Insertion 36111 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 97 Cycle Base Deletion 36111 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Substitution 36298 69.43 27.00 27.18 -0.18 After
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Insertion 35982 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 98 Cycle Base Deletion 35982 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Substitution 36336 63.23 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Insertion 36014 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 99 Cycle Base Deletion 36014 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L005 10 QualityScore Base Substitution 25003 2646.70 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L005 11 QualityScore Base Substitution 14819 1072.82 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L005 12 QualityScore Base Substitution 21364 1193.01 13.00 12.00 1.00 After
REGRESSION.HCC1395_tumor.L005 13 QualityScore Base Substitution 12992 237.45 16.00 13.00 3.00 After
REGRESSION.HCC1395_tumor.L005 14 QualityScore Base Substitution 10698 183.11 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L005 15 QualityScore Base Substitution 19070 10.16 22.00 15.00 7.00 After
REGRESSION.HCC1395_tumor.L005 16 QualityScore Base Substitution 5828 0.45 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L005 17 QualityScore Base Substitution 14424 2.87 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L005 21 QualityScore Base Substitution 114 0.00 21.00 21.00 0.00 After
REGRESSION.HCC1395_tumor.L005 22 QualityScore Base Substitution 30853 221.35 22.00 22.00 0.00 After
REGRESSION.HCC1395_tumor.L005 23 QualityScore Base Substitution 71434 442.28 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 24 QualityScore Base Substitution 116757 435.28 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L005 25 QualityScore Base Substitution 121549 209.09 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L005 28 QualityScore Base Substitution 9911 5.88 28.00 28.00 0.00 After
REGRESSION.HCC1395_tumor.L005 29 QualityScore Base Substitution 82638 130.03 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 30 QualityScore Base Substitution 3311554 1955.61 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L005 31 QualityScore Base Substitution 2145698 874.20 34.00 31.00 3.00 After
REGRESSION.HCC1395_tumor.L005 32 QualityScore Base Substitution 4682413 1059.94 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L005 33 QualityScore Base Substitution 204043 38.45 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L005 45 QualityScore Base Insertion 10956328 434.18 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 45 QualityScore Base Deletion 10956328 939.50 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L005 8 QualityScore Base Substitution 1909 356.18 7.00 8.00 -1.00 After
REGRESSION.HCC1395_tumor.L005 9 QualityScore Base Substitution 53257 7385.56 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AA Context Base Substitution 830343 1891.30 26.00 24.98 1.02 After
REGRESSION.HCC1395_tumor.L006 AAA Context Base Insertion 295191 70.68 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L006 AAA Context Base Deletion 295191 204.32 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L006 AAC Context Base Insertion 131036 5.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAC Context Base Deletion 131036 8.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAG Context Base Insertion 196257 8.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAG Context Base Deletion 196257 10.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAT Context Base Insertion 173070 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AAT Context Base Deletion 173070 15.44 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 AC Context Base Substitution 526529 1772.15 25.00 24.80 0.20 After
REGRESSION.HCC1395_tumor.L006 ACA Context Base Insertion 203461 19.75 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 ACA Context Base Deletion 203461 34.56 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L006 ACC Context Base Insertion 144898 8.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACC Context Base Deletion 144898 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACG Context Base Insertion 30244 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACG Context Base Deletion 30244 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACT Context Base Insertion 156849 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ACT Context Base Deletion 156849 11.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AG Context Base Substitution 793688 611.05 31.00 28.78 2.22 After
REGRESSION.HCC1395_tumor.L006 AGA Context Base Insertion 220872 6.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGA Context Base Deletion 220872 10.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGC Context Base Insertion 190411 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGC Context Base Deletion 190411 8.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGG Context Base Insertion 225263 11.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGG Context Base Deletion 225263 9.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGT Context Base Insertion 153680 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AGT Context Base Deletion 153680 4.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 AT Context Base Substitution 599111 621.10 30.00 27.66 2.34 After
REGRESSION.HCC1395_tumor.L006 ATA Context Base Insertion 134723 6.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATA Context Base Deletion 134723 5.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATC Context Base Insertion 120261 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATC Context Base Deletion 120261 9.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATG Context Base Insertion 173747 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATG Context Base Deletion 173747 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATT Context Base Insertion 180919 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 ATT Context Base Deletion 180919 7.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CA Context Base Substitution 849727 1833.07 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L006 CAA Context Base Insertion 170742 6.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAA Context Base Deletion 170742 11.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAC Context Base Insertion 182127 20.69 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 CAC Context Base Deletion 182127 32.39 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 CAG Context Base Insertion 289678 8.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAG Context Base Deletion 289678 11.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAT Context Base Insertion 169140 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CAT Context Base Deletion 169140 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CC Context Base Substitution 754792 2296.16 25.00 24.68 0.32 After
REGRESSION.HCC1395_tumor.L006 CCA Context Base Insertion 242767 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCA Context Base Deletion 242767 7.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCC Context Base Insertion 208950 11.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCC Context Base Deletion 208950 14.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCG Context Base Insertion 53748 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCG Context Base Deletion 53748 5.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCT Context Base Insertion 239867 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CCT Context Base Deletion 239867 11.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CG Context Base Substitution 159582 515.99 25.00 24.78 0.22 After
REGRESSION.HCC1395_tumor.L006 CGA Context Base Insertion 55580 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGA Context Base Deletion 55580 0.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGC Context Base Insertion 79487 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGC Context Base Deletion 79487 7.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGG Context Base Insertion 96864 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGG Context Base Deletion 96864 7.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGT Context Base Insertion 61913 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CGT Context Base Deletion 61913 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CT Context Base Substitution 829833 411.26 33.00 29.45 3.55 After
REGRESSION.HCC1395_tumor.L006 CTA Context Base Insertion 95824 0.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTA Context Base Deletion 95824 6.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTC Context Base Insertion 199909 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTC Context Base Deletion 199909 18.22 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 CTG Context Base Insertion 288559 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTG Context Base Deletion 288559 14.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTT Context Base Insertion 207735 8.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 CTT Context Base Deletion 207735 9.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GA Context Base Substitution 697542 1050.59 28.00 26.56 1.44 After
REGRESSION.HCC1395_tumor.L006 GAA Context Base Insertion 208197 5.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAA Context Base Deletion 208197 8.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAC Context Base Insertion 117573 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAC Context Base Deletion 117573 5.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAG Context Base Insertion 205647 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAG Context Base Deletion 205647 10.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAT Context Base Insertion 124533 2.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GAT Context Base Deletion 124533 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GC Context Base Substitution 655542 1430.06 27.00 25.94 1.06 After
REGRESSION.HCC1395_tumor.L006 GCA Context Base Insertion 202963 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCA Context Base Deletion 202963 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCC Context Base Insertion 196762 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCC Context Base Deletion 196762 10.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCG Context Base Insertion 48561 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCG Context Base Deletion 48561 5.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCT Context Base Insertion 206351 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GCT Context Base Deletion 206351 4.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GG Context Base Substitution 782611 714.10 30.00 27.76 2.24 After
REGRESSION.HCC1395_tumor.L006 GGA Context Base Insertion 212936 28.32 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 GGA Context Base Deletion 212936 12.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGC Context Base Insertion 193932 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGC Context Base Deletion 193932 6.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGG Context Base Insertion 216580 15.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGG Context Base Deletion 216580 28.13 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 GGT Context Base Insertion 156716 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GGT Context Base Deletion 156716 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GT Context Base Substitution 584018 1017.63 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L006 GTA Context Base Insertion 100308 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTA Context Base Deletion 100308 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTC Context Base Insertion 125722 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTC Context Base Deletion 125722 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTG Context Base Insertion 197314 14.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTG Context Base Deletion 197314 33.38 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 GTT Context Base Insertion 147864 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 GTT Context Base Deletion 147864 12.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TA Context Base Substitution 480957 1149.46 26.00 25.11 0.89 After
REGRESSION.HCC1395_tumor.L006 TAA Context Base Insertion 149137 6.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAA Context Base Deletion 149137 13.98 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 TAC Context Base Insertion 92420 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAC Context Base Deletion 92420 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAG Context Base Insertion 95942 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAG Context Base Deletion 95942 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAT Context Base Insertion 128041 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TAT Context Base Deletion 128041 5.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TC Context Base Substitution 641196 1558.85 26.00 26.23 -0.23 After
REGRESSION.HCC1395_tumor.L006 TCA Context Base Insertion 193989 6.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCA Context Base Deletion 193989 14.53 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 TCC Context Base Insertion 199321 32.41 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 TCC Context Base Deletion 199321 11.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCG Context Base Insertion 25878 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCG Context Base Deletion 25878 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCT Context Base Insertion 221186 5.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TCT Context Base Deletion 221186 13.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TG Context Base Substitution 834875 322.11 33.00 29.50 3.50 After
REGRESSION.HCC1395_tumor.L006 TGA Context Base Insertion 202812 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGA Context Base Deletion 202812 6.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGC Context Base Insertion 187488 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGC Context Base Deletion 187488 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGG Context Base Insertion 238101 5.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGG Context Base Deletion 238101 9.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGT Context Base Insertion 207885 13.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TGT Context Base Deletion 207885 32.36 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 TT Context Base Substitution 833559 896.86 30.00 27.70 2.30 After
REGRESSION.HCC1395_tumor.L006 TTA Context Base Insertion 146525 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTA Context Base Deletion 146525 7.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTC Context Base Insertion 191395 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTC Context Base Deletion 191395 13.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTG Context Base Insertion 169355 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTG Context Base Deletion 169355 8.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 TTT Context Base Insertion 291501 60.74 42.00 45.00 -3.00 After
REGRESSION.HCC1395_tumor.L006 TTT Context Base Deletion 291501 157.57 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L006 -1 Cycle Base Substitution 38155 146.29 24.00 23.61 0.39 After
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Substitution 38542 53.53 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Insertion 38542 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -10 Cycle Base Deletion 38542 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Substitution 35961 78.70 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Insertion 35650 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -100 Cycle Base Deletion 35650 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Substitution 35975 68.98 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Insertion 35673 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -101 Cycle Base Deletion 35673 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Substitution 35889 87.32 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Insertion 35576 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -102 Cycle Base Deletion 35576 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Substitution 35763 65.61 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Insertion 35465 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -103 Cycle Base Deletion 35465 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Substitution 35747 73.82 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Insertion 35444 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -104 Cycle Base Deletion 35444 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Substitution 35712 75.83 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Insertion 35419 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -105 Cycle Base Deletion 35419 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Substitution 35575 70.76 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Insertion 35290 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -106 Cycle Base Deletion 35290 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Substitution 35515 68.17 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Insertion 35211 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -107 Cycle Base Deletion 35211 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Substitution 35489 92.94 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Insertion 35182 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -108 Cycle Base Deletion 35182 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Substitution 35292 68.84 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Insertion 34986 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -109 Cycle Base Deletion 34986 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Substitution 38614 49.87 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Insertion 38614 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -11 Cycle Base Deletion 38614 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Substitution 35226 71.41 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Insertion 34913 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -110 Cycle Base Deletion 34913 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Substitution 35209 65.81 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Insertion 34893 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -111 Cycle Base Deletion 34893 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Substitution 35183 91.66 26.00 26.31 -0.31 After
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Insertion 34839 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -112 Cycle Base Deletion 34839 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Substitution 35146 77.98 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Insertion 34788 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -113 Cycle Base Deletion 34788 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Substitution 34998 70.42 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Insertion 34630 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -114 Cycle Base Deletion 34630 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Substitution 34820 81.63 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Insertion 34443 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -115 Cycle Base Deletion 34443 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Substitution 34707 92.00 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Insertion 34342 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -116 Cycle Base Deletion 34342 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Substitution 34718 90.62 26.00 26.06 -0.06 After
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Insertion 34344 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -117 Cycle Base Deletion 34344 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Substitution 34603 90.76 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Insertion 34225 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -118 Cycle Base Deletion 34225 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Substitution 34639 110.14 25.00 25.45 -0.45 After
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Insertion 34262 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -119 Cycle Base Deletion 34262 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Substitution 38558 47.02 29.00 28.04 0.96 After
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Insertion 38558 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -12 Cycle Base Deletion 38558 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Substitution 34516 77.38 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Insertion 34152 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -120 Cycle Base Deletion 34152 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Substitution 34291 101.71 25.00 25.45 -0.45 After
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Insertion 33907 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -121 Cycle Base Deletion 33907 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Substitution 34177 73.99 27.00 26.22 0.78 After
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Insertion 33796 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -122 Cycle Base Deletion 33796 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Substitution 34231 84.09 26.00 25.95 0.05 After
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Insertion 33861 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -123 Cycle Base Deletion 33861 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Substitution 34105 87.17 26.00 26.03 -0.03 After
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Insertion 33738 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -124 Cycle Base Deletion 33738 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Substitution 33977 77.46 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Insertion 33598 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -125 Cycle Base Deletion 33598 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Substitution 33875 76.00 26.00 26.24 -0.24 After
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Insertion 33495 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -126 Cycle Base Deletion 33495 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Substitution 33864 77.73 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Insertion 33477 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -127 Cycle Base Deletion 33477 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Substitution 33769 81.17 26.00 26.07 -0.07 After
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Insertion 33370 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -128 Cycle Base Deletion 33370 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Substitution 33722 78.73 26.00 26.28 -0.28 After
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Insertion 33300 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -129 Cycle Base Deletion 33300 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Substitution 38563 68.13 27.00 27.58 -0.58 After
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Insertion 38563 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -13 Cycle Base Deletion 38563 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Substitution 33560 77.61 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Insertion 33157 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -130 Cycle Base Deletion 33157 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Substitution 33501 70.59 27.00 26.12 0.88 After
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Insertion 33100 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -131 Cycle Base Deletion 33100 2.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Substitution 33340 74.36 26.00 26.19 -0.19 After
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Insertion 32945 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -132 Cycle Base Deletion 32945 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Substitution 33163 87.20 26.00 25.89 0.11 After
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Insertion 32785 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -133 Cycle Base Deletion 32785 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Substitution 33031 62.61 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Insertion 32642 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -134 Cycle Base Deletion 32642 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Substitution 32968 71.58 27.00 26.03 0.97 After
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Insertion 32564 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -135 Cycle Base Deletion 32564 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Substitution 32973 76.34 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Insertion 32549 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -136 Cycle Base Deletion 32549 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Substitution 32885 81.34 26.00 26.08 -0.08 After
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Insertion 32432 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -137 Cycle Base Deletion 32432 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Substitution 32771 83.24 26.00 25.37 0.63 After
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Insertion 32281 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -138 Cycle Base Deletion 32281 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Substitution 32683 72.28 27.00 26.09 0.91 After
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Insertion 32161 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -139 Cycle Base Deletion 32161 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Substitution 38634 55.84 28.00 27.61 0.39 After
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Insertion 38634 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -14 Cycle Base Deletion 38634 2.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Substitution 32604 65.21 27.00 26.03 0.97 After
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Insertion 32089 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -140 Cycle Base Deletion 32089 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Substitution 32410 61.06 27.00 26.12 0.88 After
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Insertion 31874 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -141 Cycle Base Deletion 31874 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Substitution 32204 69.05 26.00 25.96 0.04 After
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Insertion 31598 0.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -142 Cycle Base Deletion 31598 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Substitution 32062 72.08 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Insertion 31373 0.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -143 Cycle Base Deletion 31373 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Substitution 31909 32.91 28.00 26.90 1.10 After
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Insertion 31181 0.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -144 Cycle Base Deletion 31181 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Substitution 31701 48.50 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Insertion 24509 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -145 Cycle Base Deletion 24509 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Substitution 31484 20.43 28.00 26.05 1.95 After
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Insertion 24422 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -146 Cycle Base Deletion 24422 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -147 Cycle Base Substitution 31393 30.83 26.00 22.21 3.79 After
REGRESSION.HCC1395_tumor.L006 -148 Cycle Base Substitution 31253 19.38 24.00 16.05 7.95 After
REGRESSION.HCC1395_tumor.L006 -149 Cycle Base Substitution 19420 17.14 22.00 14.11 7.89 After
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Substitution 38529 38.41 29.00 27.56 1.44 After
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Insertion 38529 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -15 Cycle Base Deletion 38529 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -150 Cycle Base Substitution 6852 17.22 26.00 26.74 -0.74 After
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Substitution 38564 48.16 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Insertion 38564 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -16 Cycle Base Deletion 38564 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Substitution 38563 45.21 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Insertion 38562 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -17 Cycle Base Deletion 38562 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Substitution 38550 56.14 28.00 27.58 0.42 After
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Insertion 38549 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -18 Cycle Base Deletion 38549 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Substitution 38554 37.02 29.00 27.81 1.19 After
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Insertion 38553 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -19 Cycle Base Deletion 38553 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -2 Cycle Base Substitution 38603 126.67 25.00 25.59 -0.59 After
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Substitution 38570 59.25 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Insertion 38569 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -20 Cycle Base Deletion 38569 5.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Substitution 38466 50.98 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Insertion 38466 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -21 Cycle Base Deletion 38466 4.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Substitution 38449 50.81 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Insertion 38448 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -22 Cycle Base Deletion 38448 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Substitution 38535 39.94 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Insertion 38534 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -23 Cycle Base Deletion 38534 6.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Substitution 38508 59.11 28.00 27.60 0.40 After
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Insertion 38507 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -24 Cycle Base Deletion 38507 5.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Substitution 38461 44.92 29.00 28.26 0.74 After
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Insertion 38461 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -25 Cycle Base Deletion 38461 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Substitution 38450 62.11 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Insertion 38450 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -26 Cycle Base Deletion 38450 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Substitution 38460 35.31 29.00 27.33 1.67 After
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Insertion 38459 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -27 Cycle Base Deletion 38459 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Substitution 38471 59.77 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Insertion 38471 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -28 Cycle Base Deletion 38471 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Substitution 38265 48.45 28.00 26.51 1.49 After
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Insertion 38261 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -29 Cycle Base Deletion 38261 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -3 Cycle Base Substitution 38804 137.76 25.00 25.74 -0.74 After
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Substitution 38351 52.81 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Insertion 38347 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -30 Cycle Base Deletion 38347 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Substitution 38276 69.21 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Insertion 38273 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -31 Cycle Base Deletion 38273 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Substitution 38370 41.84 28.00 26.71 1.29 After
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Insertion 38366 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -32 Cycle Base Deletion 38366 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Substitution 38282 65.78 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Insertion 38279 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -33 Cycle Base Deletion 38279 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Substitution 38358 61.84 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Insertion 38355 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -34 Cycle Base Deletion 38355 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Substitution 38406 52.90 28.00 26.85 1.15 After
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Insertion 38400 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -35 Cycle Base Deletion 38400 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Substitution 38373 74.53 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Insertion 38367 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -36 Cycle Base Deletion 38367 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Substitution 38381 41.44 29.00 27.40 1.60 After
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Insertion 38375 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -37 Cycle Base Deletion 38375 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Substitution 38314 53.54 28.00 26.57 1.43 After
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Insertion 38307 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -38 Cycle Base Deletion 38307 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Substitution 38318 50.36 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Insertion 38312 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -39 Cycle Base Deletion 38312 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -4 Cycle Base Substitution 38580 80.97 27.00 26.20 0.80 After
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Substitution 38225 43.72 28.00 26.92 1.08 After
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Insertion 38218 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -40 Cycle Base Deletion 38218 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Substitution 38328 65.97 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Insertion 38321 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -41 Cycle Base Deletion 38321 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Substitution 38220 56.84 28.00 26.72 1.28 After
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Insertion 38211 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -42 Cycle Base Deletion 38211 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Substitution 38230 55.89 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Insertion 38224 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -43 Cycle Base Deletion 38224 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Substitution 38117 63.34 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Insertion 38112 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -44 Cycle Base Deletion 38112 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Substitution 38238 55.19 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Insertion 38227 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -45 Cycle Base Deletion 38227 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Substitution 38085 59.48 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Insertion 38077 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -46 Cycle Base Deletion 38077 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Substitution 38239 60.10 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Insertion 38228 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -47 Cycle Base Deletion 38228 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Substitution 38220 63.18 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Insertion 38211 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -48 Cycle Base Deletion 38211 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Substitution 38171 56.83 28.00 26.75 1.25 After
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Insertion 38164 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -49 Cycle Base Deletion 38164 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Substitution 38604 64.11 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Insertion 38604 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -5 Cycle Base Deletion 38604 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Substitution 38146 69.33 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Insertion 38128 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -50 Cycle Base Deletion 38128 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Substitution 38213 64.01 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Insertion 38195 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -51 Cycle Base Deletion 38195 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Substitution 38217 70.49 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Insertion 38195 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -52 Cycle Base Deletion 38195 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Substitution 38138 56.22 28.00 26.79 1.21 After
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Insertion 38107 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -53 Cycle Base Deletion 38107 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Substitution 38133 63.64 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Insertion 38101 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -54 Cycle Base Deletion 38101 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Substitution 37883 59.48 28.00 27.14 0.86 After
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Insertion 37849 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -55 Cycle Base Deletion 37849 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Substitution 38136 52.95 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Insertion 38093 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -56 Cycle Base Deletion 38093 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Substitution 37995 65.36 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Insertion 37954 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -57 Cycle Base Deletion 37954 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Substitution 38152 71.34 27.00 27.15 -0.15 After
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Insertion 38106 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -58 Cycle Base Deletion 38106 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Substitution 37891 48.80 28.00 26.99 1.01 After
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Insertion 37833 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -59 Cycle Base Deletion 37833 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Substitution 38555 68.14 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Insertion 38555 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -6 Cycle Base Deletion 38555 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Substitution 37898 66.24 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Insertion 37838 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -60 Cycle Base Deletion 37838 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Substitution 37867 65.09 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Insertion 37797 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -61 Cycle Base Deletion 37797 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Substitution 37893 59.27 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Insertion 37822 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -62 Cycle Base Deletion 37822 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Substitution 38001 48.62 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Insertion 37926 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -63 Cycle Base Deletion 37926 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Substitution 37895 45.53 28.00 26.75 1.25 After
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Insertion 37814 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -64 Cycle Base Deletion 37814 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Substitution 37842 70.59 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Insertion 37762 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -65 Cycle Base Deletion 37762 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Substitution 37767 56.55 28.00 26.67 1.33 After
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Insertion 37673 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -66 Cycle Base Deletion 37673 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Substitution 37796 71.75 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Insertion 37701 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -67 Cycle Base Deletion 37701 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Substitution 37777 73.22 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Insertion 37684 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -68 Cycle Base Deletion 37684 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Substitution 37802 43.24 29.00 27.12 1.88 After
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Insertion 37692 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -69 Cycle Base Deletion 37692 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Substitution 38506 80.50 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Insertion 38506 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -7 Cycle Base Deletion 38506 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Substitution 37832 72.67 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Insertion 37715 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -70 Cycle Base Deletion 37715 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Substitution 37784 72.51 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Insertion 37646 2.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -71 Cycle Base Deletion 37646 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Substitution 37577 71.67 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Insertion 37439 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -72 Cycle Base Deletion 37439 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Substitution 37556 77.94 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Insertion 37399 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -73 Cycle Base Deletion 37399 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Substitution 37624 78.90 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Insertion 37475 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -74 Cycle Base Deletion 37475 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Substitution 37567 66.59 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Insertion 37417 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -75 Cycle Base Deletion 37417 5.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Substitution 37519 59.52 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Insertion 37354 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -76 Cycle Base Deletion 37354 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Substitution 37520 69.30 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Insertion 37343 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -77 Cycle Base Deletion 37343 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Substitution 37339 86.14 26.00 26.73 -0.73 After
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Insertion 37155 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -78 Cycle Base Deletion 37155 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Substitution 37357 57.66 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Insertion 37166 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -79 Cycle Base Deletion 37166 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Substitution 38687 66.46 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Insertion 38687 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -8 Cycle Base Deletion 38687 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Substitution 37507 52.94 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Insertion 37306 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -80 Cycle Base Deletion 37306 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Substitution 37300 81.10 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Insertion 37082 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -81 Cycle Base Deletion 37082 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Substitution 37298 79.59 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Insertion 37072 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -82 Cycle Base Deletion 37072 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Substitution 37115 70.99 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Insertion 36872 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -83 Cycle Base Deletion 36872 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Substitution 37148 59.00 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Insertion 36907 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -84 Cycle Base Deletion 36907 5.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Substitution 37085 63.53 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Insertion 36849 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -85 Cycle Base Deletion 36849 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Substitution 36983 73.28 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Insertion 36748 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -86 Cycle Base Deletion 36748 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Substitution 36911 70.11 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Insertion 36674 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -87 Cycle Base Deletion 36674 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Substitution 36926 66.93 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Insertion 36686 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -88 Cycle Base Deletion 36686 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Substitution 36877 76.81 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Insertion 36626 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -89 Cycle Base Deletion 36626 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Substitution 38654 75.81 27.00 27.22 -0.22 After
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Insertion 38654 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -9 Cycle Base Deletion 38654 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Substitution 36737 79.65 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Insertion 36480 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -90 Cycle Base Deletion 36480 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Substitution 36815 74.32 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Insertion 36556 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -91 Cycle Base Deletion 36556 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Substitution 36589 71.89 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Insertion 36315 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -92 Cycle Base Deletion 36315 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Substitution 36436 79.35 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Insertion 36155 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -93 Cycle Base Deletion 36155 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Substitution 36446 74.11 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Insertion 36153 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -94 Cycle Base Deletion 36153 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Substitution 36454 92.87 26.00 26.50 -0.50 After
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Insertion 36161 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -95 Cycle Base Deletion 36161 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Substitution 36320 76.87 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Insertion 36024 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -96 Cycle Base Deletion 36024 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Substitution 36335 66.26 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Insertion 36029 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -97 Cycle Base Deletion 36029 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Substitution 36327 67.21 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Insertion 36020 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -98 Cycle Base Deletion 36020 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Substitution 36154 77.30 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Insertion 35856 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 -99 Cycle Base Deletion 35856 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 1 Cycle Base Substitution 38241 78.90 27.00 26.12 0.88 After
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Substitution 38659 44.92 29.00 27.48 1.52 After
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Insertion 38659 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 10 Cycle Base Deletion 38659 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Substitution 35993 59.88 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Insertion 35693 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 100 Cycle Base Deletion 35693 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Substitution 35975 56.81 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Insertion 35683 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 101 Cycle Base Deletion 35683 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Substitution 35930 45.88 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Insertion 35606 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 102 Cycle Base Deletion 35606 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Substitution 35934 61.09 28.00 27.23 0.77 After
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Insertion 35627 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 103 Cycle Base Deletion 35627 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Substitution 35748 73.23 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Insertion 35458 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 104 Cycle Base Deletion 35458 4.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Substitution 35738 56.81 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Insertion 35443 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 105 Cycle Base Deletion 35443 5.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Substitution 35667 57.16 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Insertion 35397 0.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 106 Cycle Base Deletion 35397 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Substitution 35566 78.10 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Insertion 35243 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 107 Cycle Base Deletion 35243 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Substitution 35414 91.66 26.00 26.04 -0.04 After
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Insertion 35102 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 108 Cycle Base Deletion 35102 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Substitution 35393 68.90 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Insertion 35085 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 109 Cycle Base Deletion 35085 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Substitution 38614 37.90 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Insertion 38614 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 11 Cycle Base Deletion 38614 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Substitution 35248 93.08 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Insertion 34931 1.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 110 Cycle Base Deletion 34931 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Substitution 35125 64.75 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Insertion 34822 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 111 Cycle Base Deletion 34822 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Substitution 35087 55.67 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Insertion 34760 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 112 Cycle Base Deletion 34760 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Substitution 35005 75.60 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Insertion 34655 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 113 Cycle Base Deletion 34655 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Substitution 35079 66.29 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Insertion 34686 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 114 Cycle Base Deletion 34686 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Substitution 34937 62.99 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Insertion 34573 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 115 Cycle Base Deletion 34573 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Substitution 34872 65.67 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Insertion 34506 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 116 Cycle Base Deletion 34506 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Substitution 34902 77.61 26.00 26.62 -0.62 After
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Insertion 34540 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 117 Cycle Base Deletion 34540 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Substitution 34673 70.61 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Insertion 34306 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 118 Cycle Base Deletion 34306 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Substitution 34537 75.62 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Insertion 34159 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 119 Cycle Base Deletion 34159 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Substitution 38539 42.12 29.00 27.54 1.46 After
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Insertion 38539 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 12 Cycle Base Deletion 38539 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Substitution 34456 64.63 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Insertion 34081 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 120 Cycle Base Deletion 34081 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Substitution 34462 66.52 27.00 26.30 0.70 After
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Insertion 34097 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 121 Cycle Base Deletion 34097 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Substitution 34377 70.43 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Insertion 34000 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 122 Cycle Base Deletion 34000 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Substitution 34173 74.69 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Insertion 33819 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 123 Cycle Base Deletion 33819 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Substitution 34162 75.12 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Insertion 33806 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 124 Cycle Base Deletion 33806 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Substitution 33930 56.87 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Insertion 33561 5.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 125 Cycle Base Deletion 33561 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Substitution 33883 85.66 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Insertion 33510 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 126 Cycle Base Deletion 33510 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Substitution 33839 62.32 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Insertion 33473 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 127 Cycle Base Deletion 33473 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Substitution 33710 66.34 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Insertion 33340 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 128 Cycle Base Deletion 33340 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Substitution 33651 73.92 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Insertion 33249 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 129 Cycle Base Deletion 33249 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Substitution 38544 48.32 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Insertion 38544 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 13 Cycle Base Deletion 38544 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Substitution 33506 67.26 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Insertion 33128 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 130 Cycle Base Deletion 33128 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Substitution 33526 68.53 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Insertion 33126 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 131 Cycle Base Deletion 33126 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Substitution 33496 58.73 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Insertion 33098 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 132 Cycle Base Deletion 33098 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Substitution 33296 71.55 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Insertion 32936 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 133 Cycle Base Deletion 32936 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Substitution 33234 66.09 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Insertion 32839 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 134 Cycle Base Deletion 32839 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Substitution 33167 78.70 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Insertion 32784 0.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 135 Cycle Base Deletion 32784 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Substitution 32960 55.81 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Insertion 32555 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 136 Cycle Base Deletion 32555 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Substitution 32966 57.95 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Insertion 32566 0.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 137 Cycle Base Deletion 32566 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Substitution 32855 66.43 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Insertion 32453 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 138 Cycle Base Deletion 32453 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Substitution 32820 65.56 27.00 26.44 0.56 After
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Insertion 32388 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 139 Cycle Base Deletion 32388 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Substitution 38573 48.47 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Insertion 38573 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 14 Cycle Base Deletion 38573 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Substitution 32618 63.03 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Insertion 32197 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 140 Cycle Base Deletion 32197 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Substitution 32514 74.52 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Insertion 32100 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 141 Cycle Base Deletion 32100 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Substitution 32433 69.13 27.00 26.38 0.62 After
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Insertion 31950 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 142 Cycle Base Deletion 31950 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Substitution 32263 60.49 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Insertion 31773 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 143 Cycle Base Deletion 31773 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Substitution 32244 60.72 27.00 26.40 0.60 After
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Insertion 31784 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 144 Cycle Base Deletion 31784 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Substitution 32102 62.59 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Insertion 31586 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 145 Cycle Base Deletion 31586 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Substitution 31902 73.14 26.00 26.14 -0.14 After
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Insertion 31473 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 146 Cycle Base Deletion 31473 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 147 Cycle Base Substitution 31878 76.71 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L006 148 Cycle Base Substitution 31711 77.22 26.00 26.30 -0.30 After
REGRESSION.HCC1395_tumor.L006 149 Cycle Base Substitution 31654 76.16 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Substitution 38473 47.39 28.00 27.95 0.05 After
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Insertion 38473 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 15 Cycle Base Deletion 38473 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 150 Cycle Base Substitution 31558 74.93 26.00 26.44 -0.44 After
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Substitution 38601 35.71 29.00 28.46 0.54 After
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Insertion 38601 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 16 Cycle Base Deletion 38601 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Substitution 38511 33.91 29.00 28.67 0.33 After
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Insertion 38511 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 17 Cycle Base Deletion 38511 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Substitution 38357 24.37 30.00 28.38 1.62 After
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Insertion 38357 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 18 Cycle Base Deletion 38357 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Substitution 38341 31.94 30.00 28.31 1.69 After
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Insertion 38341 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 19 Cycle Base Deletion 38341 4.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 2 Cycle Base Substitution 38598 88.97 27.00 27.48 -0.48 After
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Substitution 38491 40.16 29.00 28.51 0.49 After
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Insertion 38491 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 20 Cycle Base Deletion 38491 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Substitution 38461 34.83 29.00 28.79 0.21 After
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Insertion 38461 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 21 Cycle Base Deletion 38461 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Substitution 38394 25.82 30.00 28.69 1.31 After
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Insertion 38394 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 22 Cycle Base Deletion 38394 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Substitution 38382 15.55 30.00 28.63 1.37 After
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Insertion 38382 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 23 Cycle Base Deletion 38382 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Substitution 38389 21.68 31.00 29.27 1.73 After
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Insertion 38389 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 24 Cycle Base Deletion 38389 2.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Substitution 38402 31.77 30.00 28.63 1.37 After
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Insertion 38402 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 25 Cycle Base Deletion 38402 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Substitution 38448 32.74 30.00 28.07 1.93 After
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Insertion 38448 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 26 Cycle Base Deletion 38448 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Substitution 38350 35.74 29.00 27.69 1.31 After
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Insertion 38348 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 27 Cycle Base Deletion 38348 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Substitution 38456 50.88 29.00 28.36 0.64 After
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Insertion 38456 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 28 Cycle Base Deletion 38456 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Substitution 38313 45.88 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Insertion 38310 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 29 Cycle Base Deletion 38310 5.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 3 Cycle Base Substitution 38708 102.92 26.00 27.54 -1.54 After
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Substitution 38428 39.72 29.00 28.29 0.71 After
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Insertion 38423 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 30 Cycle Base Deletion 38423 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Substitution 38477 39.92 29.00 28.58 0.42 After
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Insertion 38474 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 31 Cycle Base Deletion 38474 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Substitution 38172 55.80 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Insertion 38169 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 32 Cycle Base Deletion 38169 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Substitution 38282 33.70 29.00 27.79 1.21 After
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Insertion 38280 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 33 Cycle Base Deletion 38280 3.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Substitution 38300 37.93 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Insertion 38296 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 34 Cycle Base Deletion 38296 4.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Substitution 38275 44.89 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Insertion 38271 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 35 Cycle Base Deletion 38271 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Substitution 38349 37.92 29.00 27.93 1.07 After
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Insertion 38345 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 36 Cycle Base Deletion 38345 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Substitution 38313 31.18 30.00 28.01 1.99 After
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Insertion 38309 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 37 Cycle Base Deletion 38309 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Substitution 38317 42.78 29.00 28.21 0.79 After
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Insertion 38314 2.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 38 Cycle Base Deletion 38314 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Substitution 38269 38.80 29.00 28.02 0.98 After
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Insertion 38268 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 39 Cycle Base Deletion 38268 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 4 Cycle Base Substitution 38735 84.42 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Substitution 38177 32.82 30.00 28.15 1.85 After
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Insertion 38174 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 40 Cycle Base Deletion 38174 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Substitution 38335 36.24 29.00 27.71 1.29 After
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Insertion 38331 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 41 Cycle Base Deletion 38331 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Substitution 38112 40.36 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Insertion 38109 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 42 Cycle Base Deletion 38109 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Substitution 38213 53.25 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Insertion 38211 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 43 Cycle Base Deletion 38211 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Substitution 38233 44.18 29.00 27.71 1.29 After
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Insertion 38233 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 44 Cycle Base Deletion 38233 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Substitution 38174 45.54 28.00 27.83 0.17 After
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Insertion 38170 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 45 Cycle Base Deletion 38170 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Substitution 38195 45.62 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Insertion 38188 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 46 Cycle Base Deletion 38188 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Substitution 38245 42.42 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Insertion 38236 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 47 Cycle Base Deletion 38236 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Substitution 38170 40.99 29.00 27.76 1.24 After
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Insertion 38160 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 48 Cycle Base Deletion 38160 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Substitution 38234 39.76 29.00 27.64 1.36 After
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Insertion 38227 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 49 Cycle Base Deletion 38227 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Substitution 38620 40.72 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Insertion 38620 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 5 Cycle Base Deletion 38620 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Substitution 38104 31.61 30.00 28.14 1.86 After
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Insertion 38092 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 50 Cycle Base Deletion 38092 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Substitution 38103 65.34 28.00 27.71 0.29 After
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Insertion 38087 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 51 Cycle Base Deletion 38087 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Substitution 38128 43.59 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Insertion 38106 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 52 Cycle Base Deletion 38106 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Substitution 38233 44.64 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Insertion 38204 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 53 Cycle Base Deletion 38204 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Substitution 38061 41.46 29.00 27.85 1.15 After
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Insertion 38029 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 54 Cycle Base Deletion 38029 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Substitution 38099 37.43 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Insertion 38067 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 55 Cycle Base Deletion 38067 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Substitution 38236 63.51 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Insertion 38195 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 56 Cycle Base Deletion 38195 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Substitution 37987 54.63 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Insertion 37951 2.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 57 Cycle Base Deletion 37951 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Substitution 38015 37.64 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Insertion 37976 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 58 Cycle Base Deletion 37976 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Substitution 38115 49.38 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Insertion 38060 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 59 Cycle Base Deletion 38060 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Substitution 38726 41.63 29.00 28.10 0.90 After
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Insertion 38726 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 6 Cycle Base Deletion 38726 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Substitution 37940 49.16 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Insertion 37877 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 60 Cycle Base Deletion 37877 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Substitution 38019 58.09 28.00 27.85 0.15 After
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Insertion 37945 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 61 Cycle Base Deletion 37945 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Substitution 38015 47.14 29.00 28.17 0.83 After
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Insertion 37939 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 62 Cycle Base Deletion 37939 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Substitution 37932 57.01 28.00 27.31 0.69 After
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Insertion 37854 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 63 Cycle Base Deletion 37854 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Substitution 37965 40.44 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Insertion 37882 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 64 Cycle Base Deletion 37882 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Substitution 37881 53.31 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Insertion 37807 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 65 Cycle Base Deletion 37807 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Substitution 37852 37.30 29.00 28.19 0.81 After
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Insertion 37760 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 66 Cycle Base Deletion 37760 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Substitution 37819 62.13 28.00 27.58 0.42 After
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Insertion 37726 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 67 Cycle Base Deletion 37726 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Substitution 37817 44.49 28.00 27.37 0.63 After
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Insertion 37719 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 68 Cycle Base Deletion 37719 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Substitution 37944 39.53 29.00 27.45 1.55 After
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Insertion 37841 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 69 Cycle Base Deletion 37841 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Substitution 38489 39.20 29.00 27.58 1.42 After
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Insertion 38489 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 7 Cycle Base Deletion 38489 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Substitution 37638 45.38 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Insertion 37532 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 70 Cycle Base Deletion 37532 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Substitution 37667 49.36 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Insertion 37543 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 71 Cycle Base Deletion 37543 3.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Substitution 37628 40.59 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Insertion 37502 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 72 Cycle Base Deletion 37502 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Substitution 37642 54.30 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Insertion 37503 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 73 Cycle Base Deletion 37503 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Substitution 37534 46.32 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Insertion 37389 2.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 74 Cycle Base Deletion 37389 4.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Substitution 37553 52.60 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Insertion 37408 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 75 Cycle Base Deletion 37408 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Substitution 37527 55.16 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Insertion 37370 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 76 Cycle Base Deletion 37370 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Substitution 37436 55.97 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Insertion 37281 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 77 Cycle Base Deletion 37281 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Substitution 37420 58.81 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Insertion 37245 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 78 Cycle Base Deletion 37245 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Substitution 37431 68.07 27.00 27.28 -0.28 After
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Insertion 37253 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 79 Cycle Base Deletion 37253 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Substitution 38524 55.80 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Insertion 38524 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 8 Cycle Base Deletion 38524 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Substitution 37431 49.09 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Insertion 37238 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 80 Cycle Base Deletion 37238 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Substitution 37217 54.09 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Insertion 37012 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 81 Cycle Base Deletion 37012 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Substitution 37242 53.60 28.00 27.35 0.65 After
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Insertion 37032 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 82 Cycle Base Deletion 37032 2.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Substitution 37172 51.88 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Insertion 36935 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 83 Cycle Base Deletion 36935 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Substitution 37249 60.77 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Insertion 37012 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 84 Cycle Base Deletion 37012 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Substitution 37059 66.83 27.00 27.15 -0.15 After
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Insertion 36832 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 85 Cycle Base Deletion 36832 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Substitution 37072 69.01 27.00 27.26 -0.26 After
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Insertion 36855 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 86 Cycle Base Deletion 36855 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Substitution 36987 48.20 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Insertion 36756 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 87 Cycle Base Deletion 36756 2.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Substitution 36845 63.27 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Insertion 36604 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 88 Cycle Base Deletion 36604 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Substitution 36900 66.36 27.00 27.03 -0.03 After
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Insertion 36653 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 89 Cycle Base Deletion 36653 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Substitution 38594 52.47 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Insertion 38594 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 9 Cycle Base Deletion 38594 2.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Substitution 36891 61.49 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Insertion 36640 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 90 Cycle Base Deletion 36640 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Substitution 36881 65.74 27.00 27.07 -0.07 After
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Insertion 36627 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 91 Cycle Base Deletion 36627 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Substitution 36623 64.96 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Insertion 36340 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 92 Cycle Base Deletion 36340 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Substitution 36442 64.56 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Insertion 36160 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 93 Cycle Base Deletion 36160 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Substitution 36557 71.13 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Insertion 36267 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 94 Cycle Base Deletion 36267 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Substitution 36361 50.77 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Insertion 36046 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 95 Cycle Base Deletion 36046 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Substitution 36312 58.18 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Insertion 36007 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 96 Cycle Base Deletion 36007 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Substitution 36317 56.12 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Insertion 36017 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 97 Cycle Base Deletion 36017 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Substitution 36213 66.13 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Insertion 35919 1.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 98 Cycle Base Deletion 35919 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Substitution 36138 62.34 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Insertion 35849 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 99 Cycle Base Deletion 35849 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L006 10 QualityScore Base Substitution 14610 1588.82 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L006 11 QualityScore Base Substitution 14301 1017.54 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L006 12 QualityScore Base Substitution 21801 1264.48 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L006 13 QualityScore Base Substitution 13143 248.15 16.00 13.00 3.00 After
REGRESSION.HCC1395_tumor.L006 14 QualityScore Base Substitution 10587 159.70 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L006 15 QualityScore Base Substitution 19050 8.48 22.00 15.00 7.00 After
REGRESSION.HCC1395_tumor.L006 16 QualityScore Base Substitution 5883 0.29 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L006 17 QualityScore Base Substitution 14254 2.64 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L006 22 QualityScore Base Substitution 10189 5.83 24.00 22.00 2.00 After
REGRESSION.HCC1395_tumor.L006 23 QualityScore Base Substitution 36556 225.36 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 24 QualityScore Base Substitution 129486 638.95 23.00 24.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 25 QualityScore Base Substitution 63279 209.57 25.00 25.00 0.00 After
REGRESSION.HCC1395_tumor.L006 26 QualityScore Base Substitution 101883 150.81 28.00 26.00 2.00 After
REGRESSION.HCC1395_tumor.L006 28 QualityScore Base Substitution 10069 0.89 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L006 29 QualityScore Base Substitution 70346 136.35 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 30 QualityScore Base Substitution 3181573 1881.44 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L006 31 QualityScore Base Substitution 2181872 819.16 34.00 31.00 3.00 After
REGRESSION.HCC1395_tumor.L006 32 QualityScore Base Substitution 4551804 1060.20 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L006 33 QualityScore Base Substitution 413930 61.53 36.00 33.00 3.00 After
REGRESSION.HCC1395_tumor.L006 45 QualityScore Base Insertion 10930319 490.53 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L006 45 QualityScore Base Deletion 10930319 979.76 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L006 8 QualityScore Base Substitution 1614 282.57 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L006 9 QualityScore Base Substitution 64089 8554.21 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AA Context Base Substitution 825444 1789.05 27.00 25.59 1.41 After
REGRESSION.HCC1395_tumor.L007 AAA Context Base Insertion 292857 57.64 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L007 AAA Context Base Deletion 292857 188.46 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L007 AAC Context Base Insertion 131145 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAC Context Base Deletion 131145 8.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAG Context Base Insertion 195507 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAG Context Base Deletion 195507 9.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAT Context Base Insertion 172172 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AAT Context Base Deletion 172172 15.66 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 AC Context Base Substitution 528153 1863.82 25.00 24.70 0.30 After
REGRESSION.HCC1395_tumor.L007 ACA Context Base Insertion 203172 17.81 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 ACA Context Base Deletion 203172 36.16 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L007 ACC Context Base Insertion 145992 7.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACC Context Base Deletion 145992 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACG Context Base Insertion 30606 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACG Context Base Deletion 30606 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACT Context Base Insertion 157301 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ACT Context Base Deletion 157301 12.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AG Context Base Substitution 792395 640.00 31.00 28.76 2.24 After
REGRESSION.HCC1395_tumor.L007 AGA Context Base Insertion 219838 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGA Context Base Deletion 219838 10.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGC Context Base Insertion 190468 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGC Context Base Deletion 190468 9.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGG Context Base Insertion 225722 9.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGG Context Base Deletion 225722 7.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGT Context Base Insertion 152816 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AGT Context Base Deletion 152816 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 AT Context Base Substitution 597436 599.75 30.00 27.61 2.39 After
REGRESSION.HCC1395_tumor.L007 ATA Context Base Insertion 133244 6.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATA Context Base Deletion 133244 6.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATC Context Base Insertion 119996 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATC Context Base Deletion 119996 9.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATG Context Base Insertion 173260 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATG Context Base Deletion 173260 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATT Context Base Insertion 181883 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 ATT Context Base Deletion 181883 8.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CA Context Base Substitution 850025 1802.06 27.00 25.76 1.24 After
REGRESSION.HCC1395_tumor.L007 CAA Context Base Insertion 169671 5.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAA Context Base Deletion 169671 11.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAC Context Base Insertion 182277 20.92 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 CAC Context Base Deletion 182277 33.92 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L007 CAG Context Base Insertion 289988 5.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAG Context Base Deletion 289988 11.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAT Context Base Insertion 169466 7.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CAT Context Base Deletion 169466 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CC Context Base Substitution 759900 2360.85 25.00 24.67 0.33 After
REGRESSION.HCC1395_tumor.L007 CCA Context Base Insertion 243063 5.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCA Context Base Deletion 243063 7.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCC Context Base Insertion 210183 10.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCC Context Base Deletion 210183 18.51 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 CCG Context Base Insertion 53913 3.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCG Context Base Deletion 53913 6.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCT Context Base Insertion 242020 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CCT Context Base Deletion 242020 9.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CG Context Base Substitution 160702 521.27 25.00 24.96 0.04 After
REGRESSION.HCC1395_tumor.L007 CGA Context Base Insertion 56137 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGA Context Base Deletion 56137 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGC Context Base Insertion 80706 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGC Context Base Deletion 80706 9.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGG Context Base Insertion 98187 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGG Context Base Deletion 98187 8.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGT Context Base Insertion 62497 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CGT Context Base Deletion 62497 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CT Context Base Substitution 834813 363.24 33.00 29.69 3.31 After
REGRESSION.HCC1395_tumor.L007 CTA Context Base Insertion 95740 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTA Context Base Deletion 95740 6.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTC Context Base Insertion 201695 6.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTC Context Base Deletion 201695 21.22 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 CTG Context Base Insertion 290977 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTG Context Base Deletion 290977 14.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTT Context Base Insertion 208291 8.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 CTT Context Base Deletion 208291 10.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GA Context Base Substitution 697788 1027.28 28.00 26.56 1.44 After
REGRESSION.HCC1395_tumor.L007 GAA Context Base Insertion 207369 4.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAA Context Base Deletion 207369 8.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAC Context Base Insertion 117953 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAC Context Base Deletion 117953 5.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAG Context Base Insertion 205092 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAG Context Base Deletion 205092 10.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAT Context Base Insertion 124787 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GAT Context Base Deletion 124787 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GC Context Base Substitution 658492 1468.72 26.00 25.99 0.01 After
REGRESSION.HCC1395_tumor.L007 GCA Context Base Insertion 202749 5.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCA Context Base Deletion 202749 4.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCC Context Base Insertion 197893 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCC Context Base Deletion 197893 12.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCG Context Base Insertion 49184 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCG Context Base Deletion 49184 7.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCT Context Base Insertion 208536 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GCT Context Base Deletion 208536 5.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GG Context Base Substitution 785979 756.42 30.00 27.73 2.27 After
REGRESSION.HCC1395_tumor.L007 GGA Context Base Insertion 213211 18.35 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GGA Context Base Deletion 213211 16.15 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GGC Context Base Insertion 194842 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GGC Context Base Deletion 194842 6.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GGG Context Base Insertion 217429 14.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GGG Context Base Deletion 217429 29.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GGT Context Base Insertion 157790 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GGT Context Base Deletion 157790 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GT Context Base Substitution 585646 965.45 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L007 GTA Context Base Insertion 100750 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTA Context Base Deletion 100750 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTC Context Base Insertion 125799 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTC Context Base Deletion 125799 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTG Context Base Insertion 198837 16.76 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GTG Context Base Deletion 198837 31.08 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 GTT Context Base Insertion 147811 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 GTT Context Base Deletion 147811 11.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TA Context Base Substitution 479827 1195.75 26.00 25.01 0.99 After
REGRESSION.HCC1395_tumor.L007 TAA Context Base Insertion 148628 11.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAA Context Base Deletion 148628 13.76 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TAC Context Base Insertion 93356 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAC Context Base Deletion 93356 5.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAG Context Base Insertion 95873 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAG Context Base Deletion 95873 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAT Context Base Insertion 126635 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TAT Context Base Deletion 126635 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TC Context Base Substitution 644321 1631.86 26.00 26.15 -0.15 After
REGRESSION.HCC1395_tumor.L007 TCA Context Base Insertion 194467 6.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCA Context Base Deletion 194467 14.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCC Context Base Insertion 200791 25.86 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TCC Context Base Deletion 200791 8.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCG Context Base Insertion 25833 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCG Context Base Deletion 25833 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCT Context Base Insertion 221313 5.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TCT Context Base Deletion 221313 18.90 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TG Context Base Substitution 838105 356.69 33.00 29.45 3.55 After
REGRESSION.HCC1395_tumor.L007 TGA Context Base Insertion 203238 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGA Context Base Deletion 203238 4.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGC Context Base Insertion 188339 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGC Context Base Deletion 188339 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGG Context Base Insertion 238758 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGG Context Base Deletion 238758 6.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TGT Context Base Insertion 208636 16.63 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TGT Context Base Deletion 208636 33.28 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 TT Context Base Substitution 836539 904.76 30.00 28.31 1.69 After
REGRESSION.HCC1395_tumor.L007 TTA Context Base Insertion 146516 8.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTA Context Base Deletion 146516 7.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTC Context Base Insertion 193011 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTC Context Base Deletion 193011 10.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTG Context Base Insertion 169082 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTG Context Base Deletion 169082 8.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 TTT Context Base Insertion 292954 40.61 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L007 TTT Context Base Deletion 292954 175.84 38.00 45.00 -7.00 After
REGRESSION.HCC1395_tumor.L007 -1 Cycle Base Substitution 38294 165.34 24.00 23.53 0.47 After
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Substitution 38670 54.49 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Insertion 38669 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -10 Cycle Base Deletion 38669 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Substitution 36175 74.05 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Insertion 35874 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -100 Cycle Base Deletion 35874 4.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Substitution 36010 79.61 26.00 26.38 -0.38 After
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Insertion 35705 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -101 Cycle Base Deletion 35705 4.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Substitution 36062 64.52 27.00 26.50 0.50 After
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Insertion 35744 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -102 Cycle Base Deletion 35744 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Substitution 35923 69.60 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Insertion 35628 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -103 Cycle Base Deletion 35628 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Substitution 35980 71.89 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Insertion 35643 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -104 Cycle Base Deletion 35643 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Substitution 35745 80.29 26.00 26.40 -0.40 After
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Insertion 35398 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -105 Cycle Base Deletion 35398 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Substitution 35697 71.47 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Insertion 35331 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -106 Cycle Base Deletion 35331 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Substitution 35636 66.85 27.00 26.34 0.66 After
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Insertion 35267 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -107 Cycle Base Deletion 35267 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Substitution 35578 68.42 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Insertion 35232 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -108 Cycle Base Deletion 35232 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Substitution 35430 91.09 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Insertion 35080 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -109 Cycle Base Deletion 35080 2.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Substitution 38509 53.59 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Insertion 38508 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -11 Cycle Base Deletion 38508 2.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Substitution 35339 63.71 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Insertion 35008 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -110 Cycle Base Deletion 35008 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Substitution 35175 61.91 27.00 26.36 0.64 After
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Insertion 34852 2.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -111 Cycle Base Deletion 34852 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Substitution 35232 90.42 26.00 26.15 -0.15 After
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Insertion 34895 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -112 Cycle Base Deletion 34895 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Substitution 35093 92.55 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Insertion 34751 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -113 Cycle Base Deletion 34751 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Substitution 35012 93.02 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Insertion 34657 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -114 Cycle Base Deletion 34657 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Substitution 34889 87.03 26.00 25.61 0.39 After
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Insertion 34511 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -115 Cycle Base Deletion 34511 2.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Substitution 34752 80.73 26.00 26.46 -0.46 After
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Insertion 34367 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -116 Cycle Base Deletion 34367 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Substitution 34601 79.28 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Insertion 34234 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -117 Cycle Base Deletion 34234 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Substitution 34601 83.73 26.00 26.23 -0.23 After
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Insertion 34222 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -118 Cycle Base Deletion 34222 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Substitution 34460 103.46 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Insertion 34107 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -119 Cycle Base Deletion 34107 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Substitution 38672 56.41 28.00 27.91 0.09 After
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Insertion 38671 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -12 Cycle Base Deletion 38671 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Substitution 34337 94.72 26.00 25.66 0.34 After
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Insertion 33973 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -120 Cycle Base Deletion 33973 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Substitution 34114 88.15 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Insertion 33745 0.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -121 Cycle Base Deletion 33745 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Substitution 34254 66.78 27.00 26.29 0.71 After
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Insertion 33884 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -122 Cycle Base Deletion 33884 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Substitution 34230 69.77 27.00 26.32 0.68 After
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Insertion 33839 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -123 Cycle Base Deletion 33839 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Substitution 34084 72.83 27.00 26.14 0.86 After
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Insertion 33694 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -124 Cycle Base Deletion 33694 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Substitution 33943 69.53 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Insertion 33565 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -125 Cycle Base Deletion 33565 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Substitution 33866 74.07 27.00 26.97 0.03 After
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Insertion 33494 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -126 Cycle Base Deletion 33494 2.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Substitution 33729 71.75 27.00 26.27 0.73 After
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Insertion 33343 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -127 Cycle Base Deletion 33343 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Substitution 33740 81.84 26.00 26.16 -0.16 After
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Insertion 33353 3.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -128 Cycle Base Deletion 33353 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Substitution 33572 66.28 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Insertion 33172 1.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -129 Cycle Base Deletion 33172 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Substitution 38472 52.59 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Insertion 38471 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -13 Cycle Base Deletion 38471 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Substitution 33513 99.33 26.00 26.04 -0.04 After
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Insertion 33102 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -130 Cycle Base Deletion 33102 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Substitution 33534 86.91 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Insertion 33110 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -131 Cycle Base Deletion 33110 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Substitution 33285 73.50 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Insertion 32853 0.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -132 Cycle Base Deletion 32853 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Substitution 33275 72.74 26.00 25.98 0.02 After
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Insertion 32858 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -133 Cycle Base Deletion 32858 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Substitution 33173 76.42 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Insertion 32730 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -134 Cycle Base Deletion 32730 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Substitution 33031 79.13 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Insertion 32606 0.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -135 Cycle Base Deletion 32606 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Substitution 32906 72.79 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Insertion 32466 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -136 Cycle Base Deletion 32466 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Substitution 32825 74.90 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Insertion 32373 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -137 Cycle Base Deletion 32373 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Substitution 32738 72.74 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Insertion 32296 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -138 Cycle Base Deletion 32296 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Substitution 32523 62.40 27.00 26.26 0.74 After
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Insertion 32053 0.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -139 Cycle Base Deletion 32053 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Substitution 38560 74.36 27.00 27.05 -0.05 After
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Insertion 38560 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -14 Cycle Base Deletion 38560 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Substitution 32507 70.40 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Insertion 32025 0.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -140 Cycle Base Deletion 32025 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Substitution 32452 54.36 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Insertion 31956 0.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -141 Cycle Base Deletion 31956 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Substitution 32215 67.43 27.00 26.25 0.75 After
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Insertion 31657 0.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -142 Cycle Base Deletion 31657 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Substitution 32134 43.75 28.00 26.22 1.78 After
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Insertion 31531 0.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -143 Cycle Base Deletion 31531 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Substitution 32070 37.39 28.00 26.78 1.22 After
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Insertion 31396 0.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -144 Cycle Base Deletion 31396 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Substitution 31939 48.10 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Insertion 24753 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -145 Cycle Base Deletion 24753 0.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Substitution 31633 21.95 28.00 26.31 1.69 After
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Insertion 24572 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -146 Cycle Base Deletion 24572 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -147 Cycle Base Substitution 31611 18.80 27.00 23.03 3.97 After
REGRESSION.HCC1395_tumor.L007 -148 Cycle Base Substitution 31365 25.15 24.00 16.11 7.89 After
REGRESSION.HCC1395_tumor.L007 -149 Cycle Base Substitution 19496 29.11 21.00 14.19 6.81 After
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Substitution 38593 56.71 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Insertion 38593 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -15 Cycle Base Deletion 38593 2.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -150 Cycle Base Substitution 6861 8.85 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Substitution 38670 56.96 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Insertion 38670 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -16 Cycle Base Deletion 38670 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Substitution 38570 65.54 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Insertion 38570 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -17 Cycle Base Deletion 38570 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Substitution 38591 57.99 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Insertion 38591 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -18 Cycle Base Deletion 38591 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Substitution 38652 53.49 28.00 27.16 0.84 After
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Insertion 38652 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -19 Cycle Base Deletion 38652 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -2 Cycle Base Substitution 38576 115.92 25.00 25.78 -0.78 After
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Substitution 38600 54.12 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Insertion 38600 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -20 Cycle Base Deletion 38600 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Substitution 38490 47.13 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Insertion 38489 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -21 Cycle Base Deletion 38489 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Substitution 38516 45.71 28.00 27.72 0.28 After
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Insertion 38515 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -22 Cycle Base Deletion 38515 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Substitution 38610 52.87 28.00 27.73 0.27 After
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Insertion 38609 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -23 Cycle Base Deletion 38609 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Substitution 38458 54.82 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Insertion 38458 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -24 Cycle Base Deletion 38458 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Substitution 38488 62.07 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Insertion 38488 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -25 Cycle Base Deletion 38488 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Substitution 38411 56.14 28.00 26.57 1.43 After
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Insertion 38411 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -26 Cycle Base Deletion 38411 2.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Substitution 38441 49.25 28.00 26.58 1.42 After
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Insertion 38439 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -27 Cycle Base Deletion 38439 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Substitution 38353 69.44 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Insertion 38349 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -28 Cycle Base Deletion 38349 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Substitution 38583 50.49 28.00 26.56 1.44 After
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Insertion 38579 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -29 Cycle Base Deletion 38579 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -3 Cycle Base Substitution 38759 127.32 25.00 26.38 -1.38 After
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Substitution 38437 54.49 28.00 26.63 1.37 After
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Insertion 38430 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -30 Cycle Base Deletion 38430 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Substitution 38346 76.33 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Insertion 38339 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -31 Cycle Base Deletion 38339 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Substitution 38431 40.20 28.00 26.77 1.23 After
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Insertion 38426 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -32 Cycle Base Deletion 38426 4.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Substitution 38437 69.06 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Insertion 38432 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -33 Cycle Base Deletion 38432 4.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Substitution 38359 42.35 28.00 26.69 1.31 After
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Insertion 38356 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -34 Cycle Base Deletion 38356 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Substitution 38438 61.53 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Insertion 38436 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -35 Cycle Base Deletion 38436 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Substitution 38498 51.68 28.00 26.54 1.46 After
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Insertion 38494 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -36 Cycle Base Deletion 38494 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Substitution 38368 55.34 28.00 27.05 0.95 After
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Insertion 38364 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -37 Cycle Base Deletion 38364 5.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Substitution 38271 64.15 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Insertion 38265 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -38 Cycle Base Deletion 38265 5.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Substitution 38349 55.90 28.00 26.76 1.24 After
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Insertion 38344 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -39 Cycle Base Deletion 38344 4.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -4 Cycle Base Substitution 38657 99.06 26.00 26.12 -0.12 After
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Substitution 38284 44.03 29.00 27.12 1.88 After
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Insertion 38280 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -40 Cycle Base Deletion 38280 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Substitution 38388 42.65 29.00 27.17 1.83 After
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Insertion 38382 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -41 Cycle Base Deletion 38382 5.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Substitution 38439 47.27 28.00 26.71 1.29 After
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Insertion 38431 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -42 Cycle Base Deletion 38431 3.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Substitution 38294 67.83 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Insertion 38283 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -43 Cycle Base Deletion 38283 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Substitution 38427 46.12 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Insertion 38421 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -44 Cycle Base Deletion 38421 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Substitution 38343 56.97 28.00 26.62 1.38 After
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Insertion 38333 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -45 Cycle Base Deletion 38333 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Substitution 38328 51.10 28.00 26.55 1.45 After
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Insertion 38320 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -46 Cycle Base Deletion 38320 3.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Substitution 38312 59.03 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Insertion 38300 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -47 Cycle Base Deletion 38300 4.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Substitution 38319 64.70 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Insertion 38305 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -48 Cycle Base Deletion 38305 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Substitution 38177 49.59 28.00 26.94 1.06 After
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Insertion 38164 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -49 Cycle Base Deletion 38164 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Substitution 38765 56.38 28.00 26.91 1.09 After
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Insertion 38764 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -5 Cycle Base Deletion 38764 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Substitution 38254 59.25 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Insertion 38232 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -50 Cycle Base Deletion 38232 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Substitution 38230 56.55 28.00 26.73 1.27 After
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Insertion 38202 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -51 Cycle Base Deletion 38202 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Substitution 38077 56.45 28.00 26.70 1.30 After
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Insertion 38046 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -52 Cycle Base Deletion 38046 4.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Substitution 38132 65.39 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Insertion 38101 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -53 Cycle Base Deletion 38101 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Substitution 38210 69.27 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Insertion 38174 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -54 Cycle Base Deletion 38174 4.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Substitution 38270 56.74 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Insertion 38225 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -55 Cycle Base Deletion 38225 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Substitution 38255 63.23 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Insertion 38215 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -56 Cycle Base Deletion 38215 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Substitution 38080 59.43 28.00 27.08 0.92 After
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Insertion 38018 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -57 Cycle Base Deletion 38018 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Substitution 38064 67.07 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Insertion 38009 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -58 Cycle Base Deletion 38009 5.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Substitution 38144 67.28 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Insertion 38091 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -59 Cycle Base Deletion 38091 4.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Substitution 38659 62.56 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Insertion 38658 0.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -6 Cycle Base Deletion 38658 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Substitution 38062 79.85 27.00 26.73 0.27 After
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Insertion 37993 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -60 Cycle Base Deletion 37993 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Substitution 37957 52.52 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Insertion 37902 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -61 Cycle Base Deletion 37902 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Substitution 37983 58.78 27.00 26.98 0.02 After
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Insertion 37923 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -62 Cycle Base Deletion 37923 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Substitution 37902 49.85 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Insertion 37842 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -63 Cycle Base Deletion 37842 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Substitution 37880 60.80 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Insertion 37814 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -64 Cycle Base Deletion 37814 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Substitution 37855 65.85 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Insertion 37765 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -65 Cycle Base Deletion 37765 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Substitution 37980 60.87 27.00 26.95 0.05 After
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Insertion 37887 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -66 Cycle Base Deletion 37887 3.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Substitution 38002 69.22 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Insertion 37903 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -67 Cycle Base Deletion 37903 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Substitution 37930 61.75 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Insertion 37824 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -68 Cycle Base Deletion 37824 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Substitution 37871 70.07 27.00 27.14 -0.14 After
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Insertion 37768 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -69 Cycle Base Deletion 37768 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Substitution 38563 71.63 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Insertion 38563 0.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -7 Cycle Base Deletion 38563 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Substitution 37761 52.91 28.00 26.66 1.34 After
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Insertion 37648 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -70 Cycle Base Deletion 37648 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Substitution 37707 66.61 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Insertion 37605 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -71 Cycle Base Deletion 37605 3.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Substitution 37668 78.35 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Insertion 37542 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -72 Cycle Base Deletion 37542 3.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Substitution 37794 79.85 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Insertion 37651 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -73 Cycle Base Deletion 37651 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Substitution 37577 67.19 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Insertion 37428 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -74 Cycle Base Deletion 37428 3.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Substitution 37689 73.06 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Insertion 37539 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -75 Cycle Base Deletion 37539 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Substitution 37595 74.94 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Insertion 37451 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -76 Cycle Base Deletion 37451 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Substitution 37559 71.47 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Insertion 37418 0.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -77 Cycle Base Deletion 37418 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Substitution 37431 71.23 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Insertion 37274 1.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -78 Cycle Base Deletion 37274 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Substitution 37454 81.78 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Insertion 37284 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -79 Cycle Base Deletion 37284 6.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Substitution 38722 49.89 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Insertion 38722 0.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -8 Cycle Base Deletion 38722 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Substitution 37399 63.93 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Insertion 37215 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -80 Cycle Base Deletion 37215 5.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Substitution 37347 67.43 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Insertion 37157 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -81 Cycle Base Deletion 37157 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Substitution 37291 59.52 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Insertion 37069 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -82 Cycle Base Deletion 37069 5.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Substitution 37314 68.60 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Insertion 37104 0.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -83 Cycle Base Deletion 37104 5.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Substitution 37166 87.43 26.00 26.67 -0.67 After
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Insertion 36952 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -84 Cycle Base Deletion 36952 4.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Substitution 37253 78.34 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Insertion 37039 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -85 Cycle Base Deletion 37039 3.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Substitution 37234 64.02 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Insertion 37032 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -86 Cycle Base Deletion 37032 4.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Substitution 36979 80.95 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Insertion 36766 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -87 Cycle Base Deletion 36766 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Substitution 37062 74.39 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Insertion 36828 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -88 Cycle Base Deletion 36828 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Substitution 37111 82.12 27.00 26.10 0.90 After
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Insertion 36860 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -89 Cycle Base Deletion 36860 4.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Substitution 38581 61.23 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Insertion 38581 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -9 Cycle Base Deletion 38581 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Substitution 37007 81.53 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Insertion 36737 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -90 Cycle Base Deletion 36737 4.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Substitution 36813 71.36 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Insertion 36519 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -91 Cycle Base Deletion 36519 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Substitution 36748 70.11 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Insertion 36464 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -92 Cycle Base Deletion 36464 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Substitution 36688 69.48 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Insertion 36398 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -93 Cycle Base Deletion 36398 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Substitution 36683 65.04 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Insertion 36421 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -94 Cycle Base Deletion 36421 4.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Substitution 36559 69.15 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Insertion 36299 1.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -95 Cycle Base Deletion 36299 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Substitution 36623 82.29 26.00 26.52 -0.52 After
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Insertion 36357 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -96 Cycle Base Deletion 36357 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Substitution 36445 82.19 26.00 26.45 -0.45 After
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Insertion 36188 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -97 Cycle Base Deletion 36188 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Substitution 36254 61.94 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Insertion 35977 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -98 Cycle Base Deletion 35977 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Substitution 36283 75.72 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Insertion 35988 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 -99 Cycle Base Deletion 35988 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 1 Cycle Base Substitution 38245 90.20 26.00 26.05 -0.05 After
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Substitution 38735 46.93 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Insertion 38735 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 10 Cycle Base Deletion 38735 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Substitution 36243 58.95 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Insertion 35945 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 100 Cycle Base Deletion 35945 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Substitution 36187 60.76 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Insertion 35881 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 101 Cycle Base Deletion 35881 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Substitution 36140 59.75 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Insertion 35831 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 102 Cycle Base Deletion 35831 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Substitution 36029 62.76 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Insertion 35718 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 103 Cycle Base Deletion 35718 2.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Substitution 36020 64.64 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Insertion 35692 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 104 Cycle Base Deletion 35692 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Substitution 35886 51.08 28.00 26.81 1.19 After
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Insertion 35558 2.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 105 Cycle Base Deletion 35558 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Substitution 35784 71.60 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Insertion 35443 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 106 Cycle Base Deletion 35443 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Substitution 35667 77.50 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Insertion 35308 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 107 Cycle Base Deletion 35308 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Substitution 35630 77.96 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Insertion 35289 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 108 Cycle Base Deletion 35289 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Substitution 35495 66.11 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Insertion 35155 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 109 Cycle Base Deletion 35155 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Substitution 38731 44.80 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Insertion 38731 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 11 Cycle Base Deletion 38731 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Substitution 35265 60.66 27.00 26.75 0.25 After
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Insertion 34948 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 110 Cycle Base Deletion 34948 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Substitution 35329 55.60 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Insertion 35017 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 111 Cycle Base Deletion 35017 4.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Substitution 35202 73.22 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Insertion 34872 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 112 Cycle Base Deletion 34872 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Substitution 35259 57.46 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Insertion 34916 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 113 Cycle Base Deletion 34916 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Substitution 35040 71.35 27.00 26.62 0.38 After
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Insertion 34706 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 114 Cycle Base Deletion 34706 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Substitution 35057 67.14 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Insertion 34687 0.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 115 Cycle Base Deletion 34687 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Substitution 34949 65.63 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Insertion 34575 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 116 Cycle Base Deletion 34575 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Substitution 34754 60.90 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Insertion 34381 1.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 117 Cycle Base Deletion 34381 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Substitution 34767 76.20 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Insertion 34398 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 118 Cycle Base Deletion 34398 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Substitution 34816 72.42 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Insertion 34458 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 119 Cycle Base Deletion 34458 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Substitution 38612 47.91 29.00 28.07 0.93 After
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Insertion 38612 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 12 Cycle Base Deletion 38612 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Substitution 34637 70.63 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Insertion 34275 1.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 120 Cycle Base Deletion 34275 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Substitution 34450 61.23 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Insertion 34075 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 121 Cycle Base Deletion 34075 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Substitution 34499 83.27 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Insertion 34137 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 122 Cycle Base Deletion 34137 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Substitution 34364 61.55 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Insertion 33995 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 123 Cycle Base Deletion 33995 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Substitution 34181 63.54 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Insertion 33819 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 124 Cycle Base Deletion 33819 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Substitution 34174 73.95 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Insertion 33796 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 125 Cycle Base Deletion 33796 3.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Substitution 34060 54.67 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Insertion 33704 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 126 Cycle Base Deletion 33704 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Substitution 33928 76.52 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Insertion 33555 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 127 Cycle Base Deletion 33555 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Substitution 33718 82.00 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Insertion 33357 2.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 128 Cycle Base Deletion 33357 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Substitution 33689 81.17 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Insertion 33318 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 129 Cycle Base Deletion 33318 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Substitution 38615 46.90 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Insertion 38615 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 13 Cycle Base Deletion 38615 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Substitution 33640 70.03 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Insertion 33248 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 130 Cycle Base Deletion 33248 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Substitution 33634 75.27 26.00 26.53 -0.53 After
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Insertion 33212 1.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 131 Cycle Base Deletion 33212 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Substitution 33586 71.67 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Insertion 33174 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 132 Cycle Base Deletion 33174 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Substitution 33322 70.33 27.00 26.46 0.54 After
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Insertion 32912 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 133 Cycle Base Deletion 32912 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Substitution 33269 67.05 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Insertion 32874 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 134 Cycle Base Deletion 32874 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Substitution 33174 76.64 26.00 26.33 -0.33 After
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Insertion 32793 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 135 Cycle Base Deletion 32793 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Substitution 33011 74.29 26.00 26.54 -0.54 After
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Insertion 32620 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 136 Cycle Base Deletion 32620 2.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Substitution 33013 84.16 26.00 26.45 -0.45 After
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Insertion 32604 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 137 Cycle Base Deletion 32604 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Substitution 32902 57.36 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Insertion 32516 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 138 Cycle Base Deletion 32516 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Substitution 32920 75.00 26.00 25.76 0.24 After
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Insertion 32498 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 139 Cycle Base Deletion 32498 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Substitution 38606 40.03 29.00 27.67 1.33 After
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Insertion 38606 1.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 14 Cycle Base Deletion 38606 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Substitution 32802 69.68 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Insertion 32399 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 140 Cycle Base Deletion 32399 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Substitution 32693 70.06 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Insertion 32291 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 141 Cycle Base Deletion 32291 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Substitution 32397 61.09 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Insertion 31942 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 142 Cycle Base Deletion 31942 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Substitution 32482 65.82 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Insertion 32073 0.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 143 Cycle Base Deletion 32073 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Substitution 32383 76.52 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Insertion 31933 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 144 Cycle Base Deletion 31933 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Substitution 32143 65.86 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Insertion 31660 0.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 145 Cycle Base Deletion 31660 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Substitution 32100 72.41 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Insertion 31664 0.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 146 Cycle Base Deletion 31664 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 147 Cycle Base Substitution 31978 79.65 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L007 148 Cycle Base Substitution 31858 98.28 25.00 26.62 -1.62 After
REGRESSION.HCC1395_tumor.L007 149 Cycle Base Substitution 31672 82.79 26.00 26.22 -0.22 After
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Substitution 38501 38.10 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Insertion 38501 2.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 15 Cycle Base Deletion 38501 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 150 Cycle Base Substitution 31577 74.63 26.00 26.48 -0.48 After
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Substitution 38470 25.91 30.00 28.59 1.41 After
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Insertion 38470 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 16 Cycle Base Deletion 38470 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Substitution 38505 40.08 29.00 28.35 0.65 After
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Insertion 38505 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 17 Cycle Base Deletion 38505 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Substitution 38486 27.12 30.00 28.50 1.50 After
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Insertion 38486 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 18 Cycle Base Deletion 38486 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Substitution 38671 21.10 30.00 28.64 1.36 After
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Insertion 38671 1.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 19 Cycle Base Deletion 38671 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 2 Cycle Base Substitution 38744 81.97 27.00 27.69 -0.69 After
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Substitution 38648 27.02 30.00 28.50 1.50 After
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Insertion 38648 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 20 Cycle Base Deletion 38648 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Substitution 38545 34.66 29.00 28.52 0.48 After
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Insertion 38545 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 21 Cycle Base Deletion 38545 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Substitution 38495 29.86 30.00 28.64 1.36 After
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Insertion 38495 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 22 Cycle Base Deletion 38495 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Substitution 38471 31.11 30.00 28.74 1.26 After
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Insertion 38471 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 23 Cycle Base Deletion 38471 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Substitution 38353 24.01 30.00 28.48 1.52 After
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Insertion 38353 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 24 Cycle Base Deletion 38353 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Substitution 38348 31.14 30.00 28.68 1.32 After
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Insertion 38348 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 25 Cycle Base Deletion 38348 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Substitution 38477 33.45 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Insertion 38477 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 26 Cycle Base Deletion 38477 4.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Substitution 38384 43.70 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Insertion 38382 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 27 Cycle Base Deletion 38382 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Substitution 38403 37.05 29.00 28.33 0.67 After
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Insertion 38403 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 28 Cycle Base Deletion 38403 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Substitution 38449 36.23 29.00 28.16 0.84 After
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Insertion 38447 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 29 Cycle Base Deletion 38447 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 3 Cycle Base Substitution 38668 105.48 26.00 27.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Substitution 38422 35.42 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Insertion 38420 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 30 Cycle Base Deletion 38420 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Substitution 38448 38.63 29.00 28.02 0.98 After
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Insertion 38446 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 31 Cycle Base Deletion 38446 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Substitution 38405 58.28 28.00 27.92 0.08 After
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Insertion 38402 2.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 32 Cycle Base Deletion 38402 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Substitution 38466 48.56 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Insertion 38463 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 33 Cycle Base Deletion 38463 4.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Substitution 38477 45.67 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Insertion 38473 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 34 Cycle Base Deletion 38473 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Substitution 38321 51.24 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Insertion 38319 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 35 Cycle Base Deletion 38319 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Substitution 38384 49.12 28.00 27.90 0.10 After
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Insertion 38381 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 36 Cycle Base Deletion 38381 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Substitution 38465 40.40 29.00 28.30 0.70 After
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Insertion 38462 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 37 Cycle Base Deletion 38462 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Substitution 38368 39.67 29.00 27.82 1.18 After
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Insertion 38364 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 38 Cycle Base Deletion 38364 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Substitution 38263 39.90 29.00 28.18 0.82 After
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Insertion 38259 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 39 Cycle Base Deletion 38259 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 4 Cycle Base Substitution 38726 73.68 27.00 27.01 -0.01 After
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Substitution 38294 48.91 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Insertion 38289 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 40 Cycle Base Deletion 38289 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Substitution 38325 48.48 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Insertion 38321 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 41 Cycle Base Deletion 38321 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Substitution 38255 49.60 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Insertion 38249 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 42 Cycle Base Deletion 38249 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Substitution 38272 46.24 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Insertion 38265 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 43 Cycle Base Deletion 38265 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Substitution 38200 45.95 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Insertion 38195 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 44 Cycle Base Deletion 38195 2.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Substitution 38212 50.01 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Insertion 38204 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 45 Cycle Base Deletion 38204 3.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Substitution 38347 44.15 29.00 27.83 1.17 After
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Insertion 38338 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 46 Cycle Base Deletion 38338 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Substitution 38189 53.67 28.00 27.56 0.44 After
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Insertion 38178 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 47 Cycle Base Deletion 38178 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Substitution 38179 46.49 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Insertion 38168 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 48 Cycle Base Deletion 38168 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Substitution 38204 49.98 29.00 28.30 0.70 After
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Insertion 38192 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 49 Cycle Base Deletion 38192 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Substitution 38646 51.57 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Insertion 38646 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 5 Cycle Base Deletion 38646 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Substitution 38231 43.54 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Insertion 38214 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 50 Cycle Base Deletion 38214 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Substitution 38189 51.53 28.00 27.96 0.04 After
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Insertion 38167 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 51 Cycle Base Deletion 38167 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Substitution 38182 43.10 29.00 27.50 1.50 After
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Insertion 38151 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 52 Cycle Base Deletion 38151 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Substitution 38106 37.37 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Insertion 38074 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 53 Cycle Base Deletion 38074 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Substitution 38118 46.48 28.00 27.68 0.32 After
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Insertion 38080 4.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 54 Cycle Base Deletion 38080 3.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Substitution 38214 44.01 29.00 27.60 1.40 After
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Insertion 38174 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 55 Cycle Base Deletion 38174 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Substitution 38160 41.65 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Insertion 38127 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 56 Cycle Base Deletion 38127 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Substitution 38172 58.68 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Insertion 38121 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 57 Cycle Base Deletion 38121 4.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Substitution 38113 36.45 29.00 27.96 1.04 After
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Insertion 38062 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 58 Cycle Base Deletion 38062 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Substitution 38134 41.02 29.00 27.86 1.14 After
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Insertion 38084 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 59 Cycle Base Deletion 38084 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Substitution 38644 43.12 29.00 27.62 1.38 After
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Insertion 38644 0.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 6 Cycle Base Deletion 38644 0.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Substitution 38065 55.21 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Insertion 38004 1.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 60 Cycle Base Deletion 38004 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Substitution 38057 50.25 28.00 27.66 0.34 After
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Insertion 38001 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 61 Cycle Base Deletion 38001 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Substitution 38070 40.79 29.00 28.17 0.83 After
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Insertion 38001 3.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 62 Cycle Base Deletion 38001 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Substitution 38012 55.60 28.00 27.53 0.47 After
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Insertion 37942 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 63 Cycle Base Deletion 37942 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Substitution 38049 47.67 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Insertion 37976 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 64 Cycle Base Deletion 37976 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Substitution 38145 53.54 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Insertion 38058 1.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 65 Cycle Base Deletion 38058 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Substitution 37872 63.42 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Insertion 37781 2.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 66 Cycle Base Deletion 37781 3.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Substitution 37917 52.51 28.00 27.14 0.86 After
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Insertion 37816 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 67 Cycle Base Deletion 37816 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Substitution 37998 54.79 28.00 27.38 0.62 After
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Insertion 37882 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 68 Cycle Base Deletion 37882 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Substitution 37780 46.91 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Insertion 37673 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 69 Cycle Base Deletion 37673 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Substitution 38497 56.78 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Insertion 38497 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 7 Cycle Base Deletion 38497 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Substitution 37879 56.31 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Insertion 37768 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 70 Cycle Base Deletion 37768 3.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Substitution 37766 59.88 28.00 27.47 0.53 After
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Insertion 37647 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 71 Cycle Base Deletion 37647 4.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Substitution 37763 44.75 28.00 27.57 0.43 After
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Insertion 37634 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 72 Cycle Base Deletion 37634 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Substitution 37698 54.09 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Insertion 37563 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 73 Cycle Base Deletion 37563 5.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Substitution 37665 52.84 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Insertion 37520 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 74 Cycle Base Deletion 37520 5.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Substitution 37694 61.39 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Insertion 37533 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 75 Cycle Base Deletion 37533 4.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Substitution 37640 53.98 28.00 27.46 0.54 After
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Insertion 37500 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 76 Cycle Base Deletion 37500 5.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Substitution 37575 54.01 28.00 27.24 0.76 After
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Insertion 37426 1.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 77 Cycle Base Deletion 37426 4.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Substitution 37487 43.99 29.00 28.16 0.84 After
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Insertion 37335 4.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 78 Cycle Base Deletion 37335 4.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Substitution 37373 56.96 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Insertion 37209 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 79 Cycle Base Deletion 37209 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Substitution 38684 58.44 28.00 27.35 0.65 After
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Insertion 38684 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 8 Cycle Base Deletion 38684 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Substitution 37376 69.68 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Insertion 37189 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 80 Cycle Base Deletion 37189 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Substitution 37327 52.28 28.00 27.29 0.71 After
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Insertion 37144 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 81 Cycle Base Deletion 37144 5.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Substitution 37281 54.17 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Insertion 37072 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 82 Cycle Base Deletion 37072 4.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Substitution 37193 60.23 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Insertion 36987 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 83 Cycle Base Deletion 36987 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Substitution 37194 66.83 27.00 27.30 -0.30 After
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Insertion 36991 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 84 Cycle Base Deletion 36991 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Substitution 37157 62.53 28.00 27.14 0.86 After
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Insertion 36944 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 85 Cycle Base Deletion 36944 4.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Substitution 37188 60.89 27.00 26.96 0.04 After
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Insertion 36979 2.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 86 Cycle Base Deletion 36979 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Substitution 37078 64.42 27.00 26.99 0.01 After
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Insertion 36863 1.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 87 Cycle Base Deletion 36863 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Substitution 37153 47.47 28.00 27.15 0.85 After
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Insertion 36926 2.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 88 Cycle Base Deletion 36926 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Substitution 36877 68.89 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Insertion 36629 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 89 Cycle Base Deletion 36629 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Substitution 38651 45.18 29.00 27.57 1.43 After
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Insertion 38651 0.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 9 Cycle Base Deletion 38651 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Substitution 36913 58.57 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Insertion 36628 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 90 Cycle Base Deletion 36628 4.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Substitution 36791 58.63 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Insertion 36496 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 91 Cycle Base Deletion 36496 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Substitution 36859 57.54 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Insertion 36572 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 92 Cycle Base Deletion 36572 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Substitution 36761 59.91 27.00 26.88 0.12 After
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Insertion 36485 1.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 93 Cycle Base Deletion 36485 2.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Substitution 36660 56.59 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Insertion 36400 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 94 Cycle Base Deletion 36400 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Substitution 36571 59.89 27.00 27.00 0.00 After
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Insertion 36310 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 95 Cycle Base Deletion 36310 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Substitution 36515 60.36 28.00 27.39 0.61 After
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Insertion 36243 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 96 Cycle Base Deletion 36243 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Substitution 36465 64.51 27.00 27.06 -0.06 After
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Insertion 36194 2.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 97 Cycle Base Deletion 36194 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Substitution 36403 78.42 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Insertion 36125 1.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 98 Cycle Base Deletion 36125 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Substitution 36249 52.43 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Insertion 35963 0.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 99 Cycle Base Deletion 35963 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L007 10 QualityScore Base Substitution 14632 1473.69 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L007 11 QualityScore Base Substitution 14447 1089.69 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L007 12 QualityScore Base Substitution 21601 1223.31 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L007 13 QualityScore Base Substitution 5961 41.67 17.00 13.00 4.00 After
REGRESSION.HCC1395_tumor.L007 14 QualityScore Base Substitution 17628 363.85 16.00 14.00 2.00 After
REGRESSION.HCC1395_tumor.L007 15 QualityScore Base Substitution 17100 13.17 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L007 16 QualityScore Base Substitution 8309 2.84 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L007 17 QualityScore Base Substitution 14178 2.57 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L007 22 QualityScore Base Substitution 297 0.12 22.00 22.00 0.00 After
REGRESSION.HCC1395_tumor.L007 23 QualityScore Base Substitution 99680 628.72 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 24 QualityScore Base Substitution 101552 391.84 24.00 24.00 0.00 After
REGRESSION.HCC1395_tumor.L007 25 QualityScore Base Substitution 140050 208.27 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L007 28 QualityScore Base Substitution 7659 3.73 28.00 28.00 0.00 After
REGRESSION.HCC1395_tumor.L007 29 QualityScore Base Substitution 57779 99.22 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 30 QualityScore Base Substitution 2492682 1578.99 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L007 31 QualityScore Base Substitution 2844746 1244.04 33.00 31.00 2.00 After
REGRESSION.HCC1395_tumor.L007 32 QualityScore Base Substitution 4652811 1073.69 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L007 33 QualityScore Base Substitution 375156 75.45 35.00 33.00 2.00 After
REGRESSION.HCC1395_tumor.L007 45 QualityScore Base Insertion 10952123 435.78 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L007 45 QualityScore Base Deletion 10952123 992.30 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L007 8 QualityScore Base Substitution 1459 258.41 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L007 9 QualityScore Base Substitution 64396 8729.24 9.00 9.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AA Context Base Substitution 831398 1822.00 27.00 25.48 1.52 After
REGRESSION.HCC1395_tumor.L008 AAA Context Base Insertion 295364 58.93 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 AAA Context Base Deletion 295364 195.95 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L008 AAC Context Base Insertion 131279 6.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAC Context Base Deletion 131279 10.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAG Context Base Insertion 196934 6.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAG Context Base Deletion 196934 9.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAT Context Base Insertion 174256 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AAT Context Base Deletion 174256 14.34 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 AC Context Base Substitution 528754 1907.49 24.00 24.70 -0.70 After
REGRESSION.HCC1395_tumor.L008 ACA Context Base Insertion 203645 19.15 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 ACA Context Base Deletion 203645 34.51 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 ACC Context Base Insertion 146082 6.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACC Context Base Deletion 146082 6.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACG Context Base Insertion 30673 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACG Context Base Deletion 30673 2.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACT Context Base Insertion 156989 2.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ACT Context Base Deletion 156989 13.74 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 AG Context Base Substitution 794831 619.31 31.00 28.68 2.32 After
REGRESSION.HCC1395_tumor.L008 AGA Context Base Insertion 220466 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGA Context Base Deletion 220466 13.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGC Context Base Insertion 191152 0.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGC Context Base Deletion 191152 6.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGG Context Base Insertion 225693 14.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGG Context Base Deletion 225693 7.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGT Context Base Insertion 154005 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AGT Context Base Deletion 154005 6.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 AT Context Base Substitution 601661 639.33 30.00 27.61 2.39 After
REGRESSION.HCC1395_tumor.L008 ATA Context Base Insertion 135161 10.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATA Context Base Deletion 135161 7.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATC Context Base Insertion 120639 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATC Context Base Deletion 120639 6.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATG Context Base Insertion 174057 4.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATG Context Base Deletion 174057 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATT Context Base Insertion 182598 4.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 ATT Context Base Deletion 182598 7.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CA Context Base Substitution 852318 1806.54 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L008 CAA Context Base Insertion 171301 5.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CAA Context Base Deletion 171301 14.65 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CAC Context Base Insertion 183202 22.00 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CAC Context Base Deletion 183202 33.31 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CAG Context Base Insertion 289765 7.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CAG Context Base Deletion 289765 12.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CAT Context Base Insertion 169787 6.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CAT Context Base Deletion 169787 6.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CC Context Base Substitution 762944 2431.74 25.00 24.58 0.42 After
REGRESSION.HCC1395_tumor.L008 CCA Context Base Insertion 244622 6.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCA Context Base Deletion 244622 7.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCC Context Base Insertion 211880 12.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCC Context Base Deletion 211880 16.43 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CCG Context Base Insertion 53524 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCG Context Base Deletion 53524 5.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCT Context Base Insertion 242426 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CCT Context Base Deletion 242426 9.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CG Context Base Substitution 160744 526.69 25.00 24.84 0.16 After
REGRESSION.HCC1395_tumor.L008 CGA Context Base Insertion 55797 4.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGA Context Base Deletion 55797 0.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGC Context Base Insertion 80153 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGC Context Base Deletion 80153 5.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGG Context Base Insertion 96991 2.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGG Context Base Deletion 96991 6.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGT Context Base Insertion 62762 0.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CGT Context Base Deletion 62762 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CT Context Base Substitution 836482 413.10 33.00 29.34 3.66 After
REGRESSION.HCC1395_tumor.L008 CTA Context Base Insertion 96160 0.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTA Context Base Deletion 96160 6.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTC Context Base Insertion 201346 6.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTC Context Base Deletion 201346 17.30 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 CTG Context Base Insertion 291107 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTG Context Base Deletion 291107 13.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTT Context Base Insertion 209522 8.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 CTT Context Base Deletion 209522 9.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GA Context Base Substitution 697695 1028.91 28.00 27.03 0.97 After
REGRESSION.HCC1395_tumor.L008 GAA Context Base Insertion 207542 6.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAA Context Base Deletion 207542 9.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAC Context Base Insertion 117742 2.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAC Context Base Deletion 117742 7.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAG Context Base Insertion 205758 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAG Context Base Deletion 205758 12.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAT Context Base Insertion 124420 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GAT Context Base Deletion 124420 2.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GC Context Base Substitution 659940 1479.73 26.00 25.96 0.04 After
REGRESSION.HCC1395_tumor.L008 GCA Context Base Insertion 202633 5.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCA Context Base Deletion 202633 7.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCC Context Base Insertion 199098 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCC Context Base Deletion 199098 9.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCG Context Base Insertion 49327 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCG Context Base Deletion 49327 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCT Context Base Insertion 208821 4.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GCT Context Base Deletion 208821 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GG Context Base Substitution 786927 700.66 30.00 28.08 1.92 After
REGRESSION.HCC1395_tumor.L008 GGA Context Base Insertion 213597 18.74 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 GGA Context Base Deletion 213597 12.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGC Context Base Insertion 195862 5.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGC Context Base Deletion 195862 6.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGG Context Base Insertion 217765 10.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGG Context Base Deletion 217765 23.37 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 GGT Context Base Insertion 157765 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GGT Context Base Deletion 157765 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GT Context Base Substitution 588444 1013.96 28.00 26.88 1.12 After
REGRESSION.HCC1395_tumor.L008 GTA Context Base Insertion 100817 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTA Context Base Deletion 100817 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTC Context Base Insertion 126542 1.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTC Context Base Deletion 126542 3.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTG Context Base Insertion 199603 12.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTG Context Base Deletion 199603 35.02 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 GTT Context Base Insertion 148533 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 GTT Context Base Deletion 148533 16.14 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 TA Context Base Substitution 483567 1184.27 26.00 24.97 1.03 After
REGRESSION.HCC1395_tumor.L008 TAA Context Base Insertion 150119 10.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAA Context Base Deletion 150119 15.22 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 TAC Context Base Insertion 93201 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAC Context Base Deletion 93201 4.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAG Context Base Insertion 96053 2.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAG Context Base Deletion 96053 0.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAT Context Base Insertion 128848 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TAT Context Base Deletion 128848 5.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TC Context Base Substitution 645400 1660.56 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L008 TCA Context Base Insertion 194774 5.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCA Context Base Deletion 194774 15.58 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 TCC Context Base Insertion 200924 24.96 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 TCC Context Base Deletion 200924 9.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCG Context Base Insertion 26018 0.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCG Context Base Deletion 26018 0.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCT Context Base Insertion 222477 3.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TCT Context Base Deletion 222477 13.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TG Context Base Substitution 840561 344.98 33.00 29.36 3.64 After
REGRESSION.HCC1395_tumor.L008 TGA Context Base Insertion 202573 1.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGA Context Base Deletion 202573 6.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGC Context Base Insertion 188546 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGC Context Base Deletion 188546 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGG Context Base Insertion 240727 4.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGG Context Base Deletion 240727 7.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGT Context Base Insertion 209958 13.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TGT Context Base Deletion 209958 41.40 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 TT Context Base Substitution 841692 964.33 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L008 TTA Context Base Insertion 147846 6.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTA Context Base Deletion 147846 8.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTC Context Base Insertion 192921 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTC Context Base Deletion 192921 13.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTG Context Base Insertion 169959 5.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTG Context Base Deletion 169959 9.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 TTT Context Base Insertion 295511 42.62 43.00 45.00 -2.00 After
REGRESSION.HCC1395_tumor.L008 TTT Context Base Deletion 295511 186.78 37.00 45.00 -8.00 After
REGRESSION.HCC1395_tumor.L008 -1 Cycle Base Substitution 38344 161.79 24.00 23.34 0.66 After
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Substitution 38700 60.95 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Insertion 38700 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -10 Cycle Base Deletion 38700 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Substitution 36325 75.03 27.00 26.52 0.48 After
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Insertion 36054 3.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -100 Cycle Base Deletion 36054 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Substitution 36291 91.70 26.00 25.66 0.34 After
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Insertion 36034 1.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -101 Cycle Base Deletion 36034 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Substitution 36303 62.71 27.00 26.59 0.41 After
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Insertion 36032 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -102 Cycle Base Deletion 36032 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Substitution 36083 85.20 26.00 25.82 0.18 After
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Insertion 35803 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -103 Cycle Base Deletion 35803 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Substitution 35961 79.02 27.00 26.48 0.52 After
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Insertion 35653 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -104 Cycle Base Deletion 35653 3.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Substitution 36059 87.35 26.00 26.70 -0.70 After
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Insertion 35746 0.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -105 Cycle Base Deletion 35746 3.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Substitution 35784 62.56 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Insertion 35490 0.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -106 Cycle Base Deletion 35490 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Substitution 35783 80.12 26.00 26.35 -0.35 After
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Insertion 35483 0.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -107 Cycle Base Deletion 35483 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Substitution 35778 81.01 26.00 25.78 0.22 After
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Insertion 35476 3.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -108 Cycle Base Deletion 35476 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Substitution 35773 90.95 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Insertion 35451 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -109 Cycle Base Deletion 35451 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Substitution 38746 61.47 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Insertion 38746 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -11 Cycle Base Deletion 38746 4.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Substitution 35637 73.05 27.00 26.51 0.49 After
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Insertion 35279 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -110 Cycle Base Deletion 35279 2.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Substitution 35546 75.01 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Insertion 35177 1.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -111 Cycle Base Deletion 35177 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Substitution 35549 88.76 26.00 25.77 0.23 After
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Insertion 35191 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -112 Cycle Base Deletion 35191 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Substitution 35387 99.01 26.00 26.10 -0.10 After
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Insertion 35024 2.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -113 Cycle Base Deletion 35024 2.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Substitution 35134 69.84 27.00 26.45 0.55 After
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Insertion 34762 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -114 Cycle Base Deletion 34762 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Substitution 35180 73.61 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Insertion 34796 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -115 Cycle Base Deletion 34796 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Substitution 35070 84.50 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Insertion 34663 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -116 Cycle Base Deletion 34663 3.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Substitution 34927 84.58 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Insertion 34533 1.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -117 Cycle Base Deletion 34533 2.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Substitution 34869 79.01 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Insertion 34483 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -118 Cycle Base Deletion 34483 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Substitution 34803 111.22 25.00 26.30 -1.30 After
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Insertion 34408 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -119 Cycle Base Deletion 34408 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Substitution 38656 49.91 28.00 27.52 0.48 After
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Insertion 38656 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -12 Cycle Base Deletion 38656 3.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Substitution 34784 89.72 26.00 25.72 0.28 After
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Insertion 34407 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -120 Cycle Base Deletion 34407 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Substitution 34495 81.29 26.00 26.24 -0.24 After
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Insertion 34112 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -121 Cycle Base Deletion 34112 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Substitution 34541 82.18 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Insertion 34153 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -122 Cycle Base Deletion 34153 2.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Substitution 34451 78.68 26.00 26.34 -0.34 After
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Insertion 34055 1.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -123 Cycle Base Deletion 34055 2.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Substitution 34286 77.74 26.00 26.16 -0.16 After
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Insertion 33898 0.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -124 Cycle Base Deletion 33898 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Substitution 34327 103.60 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Insertion 33929 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -125 Cycle Base Deletion 33929 2.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Substitution 34114 87.25 26.00 26.11 -0.11 After
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Insertion 33710 0.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -126 Cycle Base Deletion 33710 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Substitution 34093 87.90 26.00 26.08 -0.08 After
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Insertion 33715 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -127 Cycle Base Deletion 33715 2.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Substitution 33850 84.85 26.00 26.20 -0.20 After
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Insertion 33475 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -128 Cycle Base Deletion 33475 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Substitution 33730 85.02 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Insertion 33342 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -129 Cycle Base Deletion 33342 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Substitution 38664 66.34 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Insertion 38664 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -13 Cycle Base Deletion 38664 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Substitution 33776 80.10 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Insertion 33389 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -130 Cycle Base Deletion 33389 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Substitution 33631 65.11 27.00 26.24 0.76 After
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Insertion 33233 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -131 Cycle Base Deletion 33233 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Substitution 33556 81.60 26.00 26.17 -0.17 After
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Insertion 33152 1.21 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -132 Cycle Base Deletion 33152 1.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Substitution 33472 73.17 27.00 26.43 0.57 After
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Insertion 33068 0.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -133 Cycle Base Deletion 33068 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Substitution 33371 86.24 26.00 26.18 -0.18 After
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Insertion 32933 0.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -134 Cycle Base Deletion 32933 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Substitution 33286 71.50 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Insertion 32850 0.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -135 Cycle Base Deletion 32850 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Substitution 33068 74.07 26.00 26.05 -0.05 After
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Insertion 32628 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -136 Cycle Base Deletion 32628 1.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Substitution 33077 82.62 26.00 26.37 -0.37 After
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Insertion 32610 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -137 Cycle Base Deletion 32610 2.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Substitution 32935 73.32 26.00 26.27 -0.27 After
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Insertion 32481 0.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -138 Cycle Base Deletion 32481 1.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Substitution 32836 74.71 26.00 26.36 -0.36 After
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Insertion 32390 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -139 Cycle Base Deletion 32390 1.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Substitution 38544 56.46 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Insertion 38544 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -14 Cycle Base Deletion 38544 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Substitution 32674 68.64 27.00 26.13 0.87 After
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Insertion 32168 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -140 Cycle Base Deletion 32168 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Substitution 32613 62.36 27.00 26.28 0.72 After
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Insertion 32089 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -141 Cycle Base Deletion 32089 1.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Substitution 32409 64.54 27.00 26.06 0.94 After
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Insertion 31783 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -142 Cycle Base Deletion 31783 1.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Substitution 32346 63.46 27.00 26.37 0.63 After
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Insertion 31669 0.00 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -143 Cycle Base Deletion 31669 1.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Substitution 32232 52.14 27.00 26.15 0.85 After
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Insertion 31499 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -144 Cycle Base Deletion 31499 0.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Substitution 32085 53.03 27.00 26.21 0.79 After
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Insertion 24717 0.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -145 Cycle Base Deletion 24717 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Substitution 31870 25.34 28.00 26.39 1.61 After
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Insertion 24646 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -146 Cycle Base Deletion 24646 0.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -147 Cycle Base Substitution 31689 20.08 26.00 22.33 3.67 After
REGRESSION.HCC1395_tumor.L008 -148 Cycle Base Substitution 31442 19.97 24.00 16.05 7.95 After
REGRESSION.HCC1395_tumor.L008 -149 Cycle Base Substitution 19627 18.08 22.00 14.19 7.81 After
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Substitution 38805 41.89 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Insertion 38805 1.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -15 Cycle Base Deletion 38805 3.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -150 Cycle Base Substitution 6945 12.09 27.00 26.65 0.35 After
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Substitution 38739 57.12 28.00 27.63 0.37 After
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Insertion 38739 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -16 Cycle Base Deletion 38739 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Substitution 38601 56.48 28.00 27.38 0.62 After
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Insertion 38601 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -17 Cycle Base Deletion 38601 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Substitution 38626 47.25 28.00 27.82 0.18 After
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Insertion 38626 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -18 Cycle Base Deletion 38626 4.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Substitution 38591 63.86 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Insertion 38591 3.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -19 Cycle Base Deletion 38591 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -2 Cycle Base Substitution 38916 107.88 26.00 25.51 0.49 After
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Substitution 38616 57.95 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Insertion 38616 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -20 Cycle Base Deletion 38616 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Substitution 38454 39.64 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Insertion 38454 3.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -21 Cycle Base Deletion 38454 3.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Substitution 38634 60.16 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Insertion 38634 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -22 Cycle Base Deletion 38634 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Substitution 38588 58.78 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Insertion 38588 2.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -23 Cycle Base Deletion 38588 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Substitution 38553 50.75 28.00 27.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Insertion 38553 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -24 Cycle Base Deletion 38553 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Substitution 38529 54.02 28.00 27.86 0.14 After
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Insertion 38529 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -25 Cycle Base Deletion 38529 2.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Substitution 38538 63.12 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Insertion 38538 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -26 Cycle Base Deletion 38538 3.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Substitution 38572 52.32 28.00 26.54 1.46 After
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Insertion 38572 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -27 Cycle Base Deletion 38572 3.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Substitution 38410 61.57 28.00 27.04 0.96 After
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Insertion 38409 3.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -28 Cycle Base Deletion 38409 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Substitution 38581 58.06 28.00 26.44 1.56 After
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Insertion 38578 3.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -29 Cycle Base Deletion 38578 4.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -3 Cycle Base Substitution 38898 129.51 25.00 26.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Substitution 38515 57.48 28.00 26.70 1.30 After
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Insertion 38511 2.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -30 Cycle Base Deletion 38511 5.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Substitution 38451 74.48 27.00 26.41 0.59 After
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Insertion 38444 3.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -31 Cycle Base Deletion 38444 5.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Substitution 38419 42.26 29.00 27.17 1.83 After
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Insertion 38412 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -32 Cycle Base Deletion 38412 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Substitution 38487 62.90 27.00 26.77 0.23 After
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Insertion 38482 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -33 Cycle Base Deletion 38482 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Substitution 38472 50.83 28.00 26.82 1.18 After
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Insertion 38465 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -34 Cycle Base Deletion 38465 3.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Substitution 38423 52.58 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Insertion 38420 2.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -35 Cycle Base Deletion 38420 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Substitution 38591 68.42 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Insertion 38586 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -36 Cycle Base Deletion 38586 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Substitution 38378 53.57 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Insertion 38374 1.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -37 Cycle Base Deletion 38374 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Substitution 38364 64.78 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Insertion 38361 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -38 Cycle Base Deletion 38361 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Substitution 38337 63.75 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Insertion 38335 2.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -39 Cycle Base Deletion 38335 4.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -4 Cycle Base Substitution 38752 81.88 27.00 26.16 0.84 After
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Substitution 38330 55.34 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Insertion 38329 2.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -40 Cycle Base Deletion 38329 5.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Substitution 38393 52.73 28.00 26.80 1.20 After
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Insertion 38391 3.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -41 Cycle Base Deletion 38391 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Substitution 38315 47.76 28.00 26.87 1.13 After
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Insertion 38312 1.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -42 Cycle Base Deletion 38312 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Substitution 38393 57.61 28.00 26.68 1.32 After
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Insertion 38390 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -43 Cycle Base Deletion 38390 4.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Substitution 38432 69.03 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Insertion 38423 1.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -44 Cycle Base Deletion 38423 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Substitution 38281 44.59 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Insertion 38266 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -45 Cycle Base Deletion 38266 3.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Substitution 38319 63.26 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Insertion 38306 2.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -46 Cycle Base Deletion 38306 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Substitution 38265 68.26 27.00 27.08 -0.08 After
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Insertion 38252 2.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -47 Cycle Base Deletion 38252 4.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Substitution 38342 66.28 27.00 26.84 0.16 After
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Insertion 38334 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -48 Cycle Base Deletion 38334 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Substitution 38267 69.90 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Insertion 38258 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -49 Cycle Base Deletion 38258 3.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Substitution 38792 67.37 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Insertion 38792 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -5 Cycle Base Deletion 38792 1.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Substitution 38342 57.88 28.00 26.97 1.03 After
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Insertion 38329 3.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -50 Cycle Base Deletion 38329 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Substitution 38217 50.75 28.00 27.11 0.89 After
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Insertion 38199 0.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -51 Cycle Base Deletion 38199 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Substitution 38312 60.62 28.00 27.18 0.82 After
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Insertion 38282 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -52 Cycle Base Deletion 38282 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Substitution 38277 73.96 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Insertion 38247 1.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -53 Cycle Base Deletion 38247 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Substitution 38268 60.80 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Insertion 38227 1.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -54 Cycle Base Deletion 38227 3.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Substitution 38160 85.92 26.00 26.71 -0.71 After
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Insertion 38117 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -55 Cycle Base Deletion 38117 4.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Substitution 38268 66.14 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Insertion 38228 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -56 Cycle Base Deletion 38228 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Substitution 38113 51.50 28.00 26.84 1.16 After
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Insertion 38069 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -57 Cycle Base Deletion 38069 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Substitution 38161 65.55 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Insertion 38112 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -58 Cycle Base Deletion 38112 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Substitution 38234 80.47 27.00 26.91 0.09 After
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Insertion 38190 2.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -59 Cycle Base Deletion 38190 5.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Substitution 38781 86.58 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Insertion 38781 0.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -6 Cycle Base Deletion 38781 3.01 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Substitution 38269 78.14 27.00 27.02 -0.02 After
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Insertion 38214 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -60 Cycle Base Deletion 38214 5.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Substitution 38164 61.23 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Insertion 38099 2.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -61 Cycle Base Deletion 38099 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Substitution 38232 60.02 27.00 26.82 0.18 After
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Insertion 38164 3.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -62 Cycle Base Deletion 38164 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Substitution 38123 80.23 27.00 26.20 0.80 After
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Insertion 38038 2.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -63 Cycle Base Deletion 38038 5.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Substitution 38030 65.42 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Insertion 37944 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -64 Cycle Base Deletion 37944 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Substitution 37955 78.75 27.00 26.92 0.08 After
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Insertion 37860 1.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -65 Cycle Base Deletion 37860 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Substitution 37971 53.68 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Insertion 37867 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -66 Cycle Base Deletion 37867 3.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Substitution 37985 52.05 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Insertion 37880 1.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -67 Cycle Base Deletion 37880 3.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Substitution 38093 76.07 27.00 26.78 0.22 After
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Insertion 37987 1.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -68 Cycle Base Deletion 37987 3.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Substitution 38033 64.75 27.00 26.69 0.31 After
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Insertion 37934 2.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -69 Cycle Base Deletion 37934 4.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Substitution 38659 57.73 28.00 26.95 1.05 After
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Insertion 38659 0.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -7 Cycle Base Deletion 38659 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Substitution 38018 68.11 27.00 27.20 -0.20 After
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Insertion 37917 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -70 Cycle Base Deletion 37917 4.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Substitution 37775 55.87 28.00 26.73 1.27 After
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Insertion 37666 0.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -71 Cycle Base Deletion 37666 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Substitution 37745 69.29 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Insertion 37623 1.71 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -72 Cycle Base Deletion 37623 5.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Substitution 37889 80.06 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Insertion 37748 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -73 Cycle Base Deletion 37748 4.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Substitution 37803 61.99 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Insertion 37664 1.05 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -74 Cycle Base Deletion 37664 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Substitution 37670 63.50 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Insertion 37520 1.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -75 Cycle Base Deletion 37520 4.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Substitution 37623 60.16 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Insertion 37455 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -76 Cycle Base Deletion 37455 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Substitution 37508 56.86 28.00 26.64 1.36 After
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Insertion 37346 1.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -77 Cycle Base Deletion 37346 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Substitution 37638 71.81 27.00 26.71 0.29 After
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Insertion 37471 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -78 Cycle Base Deletion 37471 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Substitution 37496 79.18 27.00 26.60 0.40 After
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Insertion 37312 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -79 Cycle Base Deletion 37312 4.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Substitution 38732 61.64 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Insertion 38732 0.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -8 Cycle Base Deletion 38732 3.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Substitution 37441 64.37 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Insertion 37254 0.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -80 Cycle Base Deletion 37254 4.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Substitution 37474 68.26 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Insertion 37275 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -81 Cycle Base Deletion 37275 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Substitution 37405 79.46 27.00 26.64 0.36 After
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Insertion 37209 0.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -82 Cycle Base Deletion 37209 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Substitution 37357 76.11 27.00 26.18 0.82 After
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Insertion 37150 0.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -83 Cycle Base Deletion 37150 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Substitution 37209 69.00 27.00 26.76 0.24 After
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Insertion 37001 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -84 Cycle Base Deletion 37001 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Substitution 37204 80.92 27.00 26.39 0.61 After
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Insertion 37015 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -85 Cycle Base Deletion 37015 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Substitution 37249 68.95 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Insertion 37038 0.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -86 Cycle Base Deletion 37038 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Substitution 37160 80.50 27.00 26.47 0.53 After
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Insertion 36960 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -87 Cycle Base Deletion 36960 2.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Substitution 37138 73.78 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Insertion 36926 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -88 Cycle Base Deletion 36926 3.29 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Substitution 37080 67.35 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Insertion 36861 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -89 Cycle Base Deletion 36861 3.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Substitution 38787 73.75 27.00 27.26 -0.26 After
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Insertion 38787 0.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -9 Cycle Base Deletion 38787 3.48 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Substitution 37027 79.42 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Insertion 36800 0.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -90 Cycle Base Deletion 36800 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Substitution 37026 77.34 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Insertion 36793 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -91 Cycle Base Deletion 36793 3.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Substitution 36870 91.69 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Insertion 36630 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -92 Cycle Base Deletion 36630 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Substitution 36823 83.78 26.00 25.88 0.12 After
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Insertion 36557 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -93 Cycle Base Deletion 36557 3.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Substitution 36658 71.46 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Insertion 36388 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -94 Cycle Base Deletion 36388 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Substitution 36781 71.74 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Insertion 36490 2.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -95 Cycle Base Deletion 36490 3.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Substitution 36636 86.06 26.00 25.99 0.01 After
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Insertion 36351 0.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -96 Cycle Base Deletion 36351 2.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Substitution 36583 81.86 26.00 26.62 -0.62 After
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Insertion 36293 1.65 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -97 Cycle Base Deletion 36293 3.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Substitution 36414 78.79 27.00 26.42 0.58 After
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Insertion 36145 1.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -98 Cycle Base Deletion 36145 3.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Substitution 36465 73.62 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Insertion 36199 2.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 -99 Cycle Base Deletion 36199 3.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 1 Cycle Base Substitution 38372 84.09 26.00 25.77 0.23 After
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Substitution 38748 43.24 29.00 27.58 1.42 After
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Insertion 38748 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 10 Cycle Base Deletion 38748 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Substitution 36276 73.71 27.00 26.81 0.19 After
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Insertion 36011 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 100 Cycle Base Deletion 36011 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Substitution 36321 48.31 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Insertion 36072 3.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 101 Cycle Base Deletion 36072 3.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Substitution 36222 51.40 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Insertion 35955 2.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 102 Cycle Base Deletion 35955 3.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Substitution 36161 66.94 27.00 26.80 0.20 After
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Insertion 35871 2.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 103 Cycle Base Deletion 35871 4.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Substitution 36098 54.47 28.00 26.74 1.26 After
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Insertion 35811 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 104 Cycle Base Deletion 35811 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Substitution 36032 61.84 27.00 26.89 0.11 After
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Insertion 35732 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 105 Cycle Base Deletion 35732 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Substitution 36036 63.45 28.00 27.07 0.93 After
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Insertion 35751 1.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 106 Cycle Base Deletion 35751 3.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Substitution 35799 65.29 27.00 27.17 -0.17 After
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Insertion 35511 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 107 Cycle Base Deletion 35511 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Substitution 35741 77.13 27.00 26.74 0.26 After
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Insertion 35451 2.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 108 Cycle Base Deletion 35451 2.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Substitution 35776 48.20 28.00 27.19 0.81 After
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Insertion 35462 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 109 Cycle Base Deletion 35462 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Substitution 38747 39.82 29.00 27.36 1.64 After
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Insertion 38747 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 11 Cycle Base Deletion 38747 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Substitution 35734 71.69 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Insertion 35380 1.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 110 Cycle Base Deletion 35380 3.82 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Substitution 35746 72.37 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Insertion 35374 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 111 Cycle Base Deletion 35374 4.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Substitution 35582 68.59 27.00 26.90 0.10 After
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Insertion 35207 1.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 112 Cycle Base Deletion 35207 4.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Substitution 35640 66.96 27.00 26.79 0.21 After
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Insertion 35265 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 113 Cycle Base Deletion 35265 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Substitution 35407 59.29 27.00 26.86 0.14 After
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Insertion 35044 1.55 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 114 Cycle Base Deletion 35044 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Substitution 35247 67.08 27.00 26.63 0.37 After
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Insertion 34864 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 115 Cycle Base Deletion 34864 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Substitution 35169 77.73 26.00 26.69 -0.69 After
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Insertion 34770 1.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 116 Cycle Base Deletion 34770 3.38 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Substitution 34990 73.31 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Insertion 34594 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 117 Cycle Base Deletion 34594 3.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Substitution 34843 55.93 27.00 26.68 0.32 After
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Insertion 34482 2.15 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 118 Cycle Base Deletion 34482 3.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Substitution 34977 75.76 27.00 26.70 0.30 After
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Insertion 34609 0.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 119 Cycle Base Deletion 34609 2.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Substitution 38741 42.49 29.00 27.77 1.23 After
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Insertion 38741 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 12 Cycle Base Deletion 38741 3.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Substitution 34757 60.65 27.00 26.85 0.15 After
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Insertion 34403 0.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 120 Cycle Base Deletion 34403 4.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Substitution 34831 83.90 26.00 26.74 -0.74 After
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Insertion 34446 0.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 121 Cycle Base Deletion 34446 4.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Substitution 34440 60.28 27.00 26.56 0.44 After
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Insertion 34044 0.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 122 Cycle Base Deletion 34044 3.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Substitution 34467 69.40 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Insertion 34079 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 123 Cycle Base Deletion 34079 3.36 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Substitution 34420 77.91 26.00 26.55 -0.55 After
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Insertion 34029 0.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 124 Cycle Base Deletion 34029 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Substitution 34387 72.34 27.00 26.58 0.42 After
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Insertion 34002 0.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 125 Cycle Base Deletion 34002 2.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Substitution 34250 82.92 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Insertion 33879 0.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 126 Cycle Base Deletion 33879 2.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Substitution 34132 62.21 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Insertion 33774 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 127 Cycle Base Deletion 33774 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Substitution 33985 74.48 27.00 26.53 0.47 After
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Insertion 33624 0.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 128 Cycle Base Deletion 33624 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Substitution 33951 58.79 27.00 26.61 0.39 After
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Insertion 33586 0.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 129 Cycle Base Deletion 33586 3.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Substitution 38687 52.32 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Insertion 38687 1.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 13 Cycle Base Deletion 38687 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Substitution 33806 69.25 27.00 26.54 0.46 After
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Insertion 33427 0.79 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 130 Cycle Base Deletion 33427 3.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Substitution 33886 76.68 26.00 26.60 -0.60 After
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Insertion 33506 0.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 131 Cycle Base Deletion 33506 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Substitution 33744 78.26 26.00 26.39 -0.39 After
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Insertion 33341 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 132 Cycle Base Deletion 33341 2.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Substitution 33540 80.20 26.00 26.64 -0.64 After
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Insertion 33165 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 133 Cycle Base Deletion 33165 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Substitution 33417 65.25 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Insertion 33021 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 134 Cycle Base Deletion 33021 3.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Substitution 33356 61.25 27.00 26.33 0.67 After
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Insertion 32928 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 135 Cycle Base Deletion 32928 2.31 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Substitution 33197 70.75 27.00 26.72 0.28 After
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Insertion 32791 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 136 Cycle Base Deletion 32791 2.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Substitution 33194 56.47 27.00 26.49 0.51 After
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Insertion 32779 0.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 137 Cycle Base Deletion 32779 2.72 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Substitution 33047 64.36 27.00 26.57 0.43 After
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Insertion 32645 0.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 138 Cycle Base Deletion 32645 1.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Substitution 33025 67.73 27.00 26.55 0.45 After
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Insertion 32613 1.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 139 Cycle Base Deletion 32613 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Substitution 38592 34.10 29.00 28.16 0.84 After
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Insertion 38592 3.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 14 Cycle Base Deletion 38592 2.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Substitution 32865 65.61 27.00 26.31 0.69 After
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Insertion 32450 0.57 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 140 Cycle Base Deletion 32450 1.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Substitution 32891 59.83 27.00 26.67 0.33 After
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Insertion 32461 0.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 141 Cycle Base Deletion 32461 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Substitution 32736 76.37 26.00 26.64 -0.64 After
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Insertion 32287 0.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 142 Cycle Base Deletion 32287 1.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Substitution 32625 76.80 26.00 26.32 -0.32 After
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Insertion 32165 0.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 143 Cycle Base Deletion 32165 1.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Substitution 32441 74.95 26.00 26.56 -0.56 After
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Insertion 31956 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 144 Cycle Base Deletion 31956 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Substitution 32432 71.89 26.00 26.44 -0.44 After
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Insertion 31931 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 145 Cycle Base Deletion 31931 0.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Substitution 32326 66.70 27.00 26.66 0.34 After
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Insertion 31857 0.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 146 Cycle Base Deletion 31857 0.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 147 Cycle Base Substitution 32048 72.19 26.00 26.51 -0.51 After
REGRESSION.HCC1395_tumor.L008 148 Cycle Base Substitution 31936 90.88 26.00 26.58 -0.58 After
REGRESSION.HCC1395_tumor.L008 149 Cycle Base Substitution 31814 81.24 26.00 26.42 -0.42 After
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Substitution 38693 45.97 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Insertion 38693 3.97 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 15 Cycle Base Deletion 38693 2.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 150 Cycle Base Substitution 31769 83.20 26.00 26.55 -0.55 After
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Substitution 38523 25.81 30.00 28.68 1.32 After
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Insertion 38523 2.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 16 Cycle Base Deletion 38523 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Substitution 38582 40.06 29.00 28.50 0.50 After
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Insertion 38582 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 17 Cycle Base Deletion 38582 3.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Substitution 38599 23.64 30.00 28.92 1.08 After
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Insertion 38598 2.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 18 Cycle Base Deletion 38598 4.28 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Substitution 38617 31.04 30.00 28.71 1.29 After
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Insertion 38616 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 19 Cycle Base Deletion 38616 3.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 2 Cycle Base Substitution 38826 75.82 27.00 27.59 -0.59 After
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Substitution 38575 38.51 29.00 28.60 0.40 After
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Insertion 38574 2.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 20 Cycle Base Deletion 38574 3.24 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Substitution 38518 27.72 30.00 28.53 1.47 After
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Insertion 38517 2.66 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 21 Cycle Base Deletion 38517 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Substitution 38695 21.78 30.00 28.75 1.25 After
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Insertion 38695 3.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 22 Cycle Base Deletion 38695 3.23 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Substitution 38458 29.91 30.00 28.59 1.41 After
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Insertion 38458 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 23 Cycle Base Deletion 38458 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Substitution 38563 30.56 30.00 28.76 1.24 After
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Insertion 38562 1.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 24 Cycle Base Deletion 38562 4.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Substitution 38469 34.25 29.00 28.43 0.57 After
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Insertion 38468 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 25 Cycle Base Deletion 38468 3.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Substitution 38490 50.02 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Insertion 38489 3.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 26 Cycle Base Deletion 38489 3.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Substitution 38587 35.98 29.00 27.56 1.44 After
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Insertion 38583 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 27 Cycle Base Deletion 38583 4.96 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Substitution 38551 42.05 29.00 28.20 0.80 After
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Insertion 38548 1.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 28 Cycle Base Deletion 38548 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Substitution 38533 34.91 29.00 27.79 1.21 After
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Insertion 38528 3.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 29 Cycle Base Deletion 38528 4.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 3 Cycle Base Substitution 38862 105.45 26.00 27.21 -1.21 After
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Substitution 38581 44.55 28.00 27.87 0.13 After
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Insertion 38576 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 30 Cycle Base Deletion 38576 5.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Substitution 38380 32.42 29.00 27.87 1.13 After
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Insertion 38377 1.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 31 Cycle Base Deletion 38377 5.34 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Substitution 38514 58.53 28.00 27.80 0.20 After
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Insertion 38509 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 32 Cycle Base Deletion 38509 5.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Substitution 38485 33.48 29.00 27.71 1.29 After
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Insertion 38483 1.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 33 Cycle Base Deletion 38483 4.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Substitution 38421 41.50 29.00 27.59 1.41 After
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Insertion 38416 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 34 Cycle Base Deletion 38416 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Substitution 38473 45.09 28.00 27.81 0.19 After
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Insertion 38469 1.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 35 Cycle Base Deletion 38469 4.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Substitution 38481 49.89 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Insertion 38479 1.62 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 36 Cycle Base Deletion 38479 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Substitution 38363 37.72 29.00 27.92 1.08 After
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Insertion 38361 1.50 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 37 Cycle Base Deletion 38361 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Substitution 38427 42.56 29.00 27.95 1.05 After
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Insertion 38422 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 38 Cycle Base Deletion 38422 4.19 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Substitution 38443 47.18 28.00 27.65 0.35 After
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Insertion 38440 1.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 39 Cycle Base Deletion 38440 4.51 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 4 Cycle Base Substitution 38936 75.36 27.00 27.24 -0.24 After
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Substitution 38444 48.14 28.00 27.84 0.16 After
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Insertion 38441 1.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 40 Cycle Base Deletion 38441 4.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Substitution 38461 46.89 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Insertion 38456 3.10 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 41 Cycle Base Deletion 38456 4.70 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Substitution 38373 48.06 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Insertion 38372 2.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 42 Cycle Base Deletion 38372 4.42 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Substitution 38454 35.60 29.00 28.25 0.75 After
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Insertion 38453 2.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 43 Cycle Base Deletion 38453 4.74 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Substitution 38464 48.59 29.00 28.05 0.95 After
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Insertion 38460 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 44 Cycle Base Deletion 38460 4.73 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Substitution 38370 43.05 29.00 28.25 0.75 After
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Insertion 38364 2.54 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 45 Cycle Base Deletion 38364 4.76 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Substitution 38365 37.27 29.00 28.20 0.80 After
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Insertion 38355 2.99 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 46 Cycle Base Deletion 38355 4.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Substitution 38290 45.87 28.00 27.70 0.30 After
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Insertion 38279 2.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 47 Cycle Base Deletion 38279 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Substitution 38318 55.26 28.00 27.76 0.24 After
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Insertion 38311 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 48 Cycle Base Deletion 38311 4.80 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Substitution 38367 49.08 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Insertion 38356 2.84 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 49 Cycle Base Deletion 38356 4.78 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Substitution 38855 47.25 28.00 27.92 0.08 After
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Insertion 38855 0.85 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 5 Cycle Base Deletion 38855 0.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Substitution 38364 46.49 28.00 27.79 0.21 After
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Insertion 38348 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 50 Cycle Base Deletion 38348 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Substitution 38178 47.61 29.00 28.27 0.73 After
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Insertion 38155 1.69 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 51 Cycle Base Deletion 38155 4.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Substitution 38258 42.36 29.00 27.78 1.22 After
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Insertion 38229 2.03 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 52 Cycle Base Deletion 38229 4.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Substitution 38229 38.30 29.00 27.70 1.30 After
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Insertion 38202 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 53 Cycle Base Deletion 38202 4.47 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Substitution 38244 52.53 28.00 27.27 0.73 After
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Insertion 38215 2.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 54 Cycle Base Deletion 38215 4.30 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Substitution 38150 29.36 29.00 27.74 1.26 After
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Insertion 38113 2.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 55 Cycle Base Deletion 38113 4.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Substitution 38346 40.98 29.00 27.61 1.39 After
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Insertion 38303 0.98 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 56 Cycle Base Deletion 38303 4.95 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Substitution 38155 47.34 28.00 27.50 0.50 After
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Insertion 38114 0.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 57 Cycle Base Deletion 38114 5.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Substitution 38261 43.46 29.00 27.62 1.38 After
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Insertion 38208 1.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 58 Cycle Base Deletion 38208 4.09 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Substitution 38208 39.79 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Insertion 38163 0.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 59 Cycle Base Deletion 38163 4.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Substitution 38798 47.72 28.00 27.78 0.22 After
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Insertion 38798 0.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 6 Cycle Base Deletion 38798 1.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Substitution 38094 54.82 28.00 27.54 0.46 After
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Insertion 38043 1.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 60 Cycle Base Deletion 38043 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Substitution 38170 47.01 28.00 27.55 0.45 After
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Insertion 38104 1.06 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 61 Cycle Base Deletion 38104 3.43 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Substitution 38057 63.61 28.00 27.43 0.57 After
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Insertion 37991 1.44 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 62 Cycle Base Deletion 37991 3.46 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Substitution 38067 59.93 28.00 27.42 0.58 After
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Insertion 37985 1.37 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 63 Cycle Base Deletion 37985 3.45 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Substitution 38022 52.63 28.00 27.67 0.33 After
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Insertion 37932 2.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 64 Cycle Base Deletion 37932 3.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Substitution 38078 40.28 29.00 27.58 1.42 After
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Insertion 37990 1.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 65 Cycle Base Deletion 37990 3.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Substitution 37902 43.59 28.00 27.93 0.07 After
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Insertion 37804 1.67 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 66 Cycle Base Deletion 37804 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Substitution 37947 55.07 28.00 27.45 0.55 After
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Insertion 37857 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 67 Cycle Base Deletion 37857 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Substitution 37950 72.80 27.00 27.46 -0.46 After
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Insertion 37856 1.61 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 68 Cycle Base Deletion 37856 3.60 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Substitution 37972 52.25 28.00 27.51 0.49 After
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Insertion 37880 1.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 69 Cycle Base Deletion 37880 4.13 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Substitution 38698 41.57 29.00 27.72 1.28 After
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Insertion 38698 0.90 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 7 Cycle Base Deletion 38698 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Substitution 37880 38.27 29.00 28.06 0.94 After
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Insertion 37779 1.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 70 Cycle Base Deletion 37779 4.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Substitution 37947 39.92 29.00 27.65 1.35 After
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Insertion 37828 1.94 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 71 Cycle Base Deletion 37828 3.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Substitution 37827 54.91 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Insertion 37704 1.56 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 72 Cycle Base Deletion 37704 4.40 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Substitution 37914 63.44 28.00 27.26 0.74 After
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Insertion 37780 2.26 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 73 Cycle Base Deletion 37780 5.17 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Substitution 37725 62.87 28.00 27.17 0.83 After
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Insertion 37584 1.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 74 Cycle Base Deletion 37584 3.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Substitution 37757 55.67 28.00 27.62 0.38 After
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Insertion 37610 1.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 75 Cycle Base Deletion 37610 3.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Substitution 37721 56.40 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Insertion 37560 1.91 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 76 Cycle Base Deletion 37560 2.77 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Substitution 37635 64.93 28.00 27.32 0.68 After
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Insertion 37481 2.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 77 Cycle Base Deletion 37481 3.33 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Substitution 37593 54.22 28.00 27.33 0.67 After
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Insertion 37434 1.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 78 Cycle Base Deletion 37434 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Substitution 37540 66.98 27.00 27.36 -0.36 After
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Insertion 37362 1.58 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 79 Cycle Base Deletion 37362 2.92 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Substitution 38696 47.31 28.00 27.48 0.52 After
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Insertion 38696 0.93 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 8 Cycle Base Deletion 38696 2.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Substitution 37487 60.89 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Insertion 37309 1.75 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 80 Cycle Base Deletion 37309 2.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Substitution 37473 56.85 28.00 27.12 0.88 After
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Insertion 37259 3.59 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 81 Cycle Base Deletion 37259 3.18 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Substitution 37375 56.58 28.00 27.30 0.70 After
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Insertion 37176 2.11 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 82 Cycle Base Deletion 37176 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Substitution 37305 53.91 28.00 27.40 0.60 After
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Insertion 37112 1.04 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 83 Cycle Base Deletion 37112 3.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Substitution 37242 68.87 27.00 27.08 -0.08 After
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Insertion 37038 1.83 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 84 Cycle Base Deletion 37038 4.35 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Substitution 37306 59.88 28.00 27.13 0.87 After
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Insertion 37109 1.14 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 85 Cycle Base Deletion 37109 4.07 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Substitution 37206 55.05 28.00 26.77 1.23 After
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Insertion 36984 1.16 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 86 Cycle Base Deletion 36984 4.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Substitution 37214 50.05 28.00 27.25 0.75 After
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Insertion 37007 1.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 87 Cycle Base Deletion 37007 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Substitution 37021 75.05 27.00 26.94 0.06 After
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Insertion 36809 1.89 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 88 Cycle Base Deletion 36809 4.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Substitution 36984 54.17 28.00 27.01 0.99 After
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Insertion 36777 2.12 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 89 Cycle Base Deletion 36777 4.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Substitution 38736 44.84 29.00 27.73 1.27 After
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Insertion 38736 0.81 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 9 Cycle Base Deletion 38736 3.49 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Substitution 37020 54.60 28.00 27.20 0.80 After
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Insertion 36796 1.64 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 90 Cycle Base Deletion 36796 4.20 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Substitution 37131 62.14 28.00 27.49 0.51 After
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Insertion 36906 1.02 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 91 Cycle Base Deletion 36906 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Substitution 36917 74.22 27.00 27.06 -0.06 After
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Insertion 36694 0.86 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 92 Cycle Base Deletion 36694 4.27 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Substitution 36865 52.25 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Insertion 36611 0.63 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 93 Cycle Base Deletion 36611 3.88 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Substitution 36791 56.25 27.00 26.93 0.07 After
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Insertion 36525 1.32 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 94 Cycle Base Deletion 36525 4.68 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Substitution 36810 56.98 28.00 27.22 0.78 After
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Insertion 36523 1.52 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 95 Cycle Base Deletion 36523 4.08 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Substitution 36720 65.21 27.00 27.10 -0.10 After
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Insertion 36436 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 96 Cycle Base Deletion 36436 4.22 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Substitution 36634 64.22 28.00 27.02 0.98 After
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Insertion 36341 1.39 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 97 Cycle Base Deletion 36341 3.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Substitution 36560 64.65 27.00 26.87 0.13 After
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Insertion 36288 1.25 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 98 Cycle Base Deletion 36288 3.53 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Substitution 36297 61.29 28.00 27.09 0.91 After
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Insertion 36033 1.41 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 99 Cycle Base Deletion 36033 3.87 45.00 45.00 0.00 After
REGRESSION.HCC1395_tumor.L008 10 QualityScore Base Substitution 25817 2703.69 10.00 10.00 0.00 After
REGRESSION.HCC1395_tumor.L008 11 QualityScore Base Substitution 9320 666.82 11.00 11.00 0.00 After
REGRESSION.HCC1395_tumor.L008 12 QualityScore Base Substitution 28017 1699.55 12.00 12.00 0.00 After
REGRESSION.HCC1395_tumor.L008 13 QualityScore Base Substitution 12484 251.74 16.00 13.00 3.00 After
REGRESSION.HCC1395_tumor.L008 14 QualityScore Base Substitution 12216 180.75 17.00 14.00 3.00 After
REGRESSION.HCC1395_tumor.L008 15 QualityScore Base Substitution 17499 13.32 21.00 15.00 6.00 After
REGRESSION.HCC1395_tumor.L008 16 QualityScore Base Substitution 7760 0.33 20.00 16.00 4.00 After
REGRESSION.HCC1395_tumor.L008 17 QualityScore Base Substitution 14222 0.87 22.00 17.00 5.00 After
REGRESSION.HCC1395_tumor.L008 21 QualityScore Base Substitution 98 0.00 21.00 21.00 0.00 After
REGRESSION.HCC1395_tumor.L008 22 QualityScore Base Substitution 39105 228.29 22.00 22.00 0.00 After
REGRESSION.HCC1395_tumor.L008 23 QualityScore Base Substitution 74322 431.18 22.00 23.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 24 QualityScore Base Substitution 120544 417.96 25.00 24.00 1.00 After
REGRESSION.HCC1395_tumor.L008 25 QualityScore Base Substitution 110480 193.93 27.00 25.00 2.00 After
REGRESSION.HCC1395_tumor.L008 28 QualityScore Base Substitution 8195 0.72 29.00 28.00 1.00 After
REGRESSION.HCC1395_tumor.L008 29 QualityScore Base Substitution 60065 101.67 28.00 29.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 30 QualityScore Base Substitution 2574900 1624.58 32.00 30.00 2.00 After
REGRESSION.HCC1395_tumor.L008 31 QualityScore Base Substitution 2728435 1107.52 34.00 31.00 3.00 After
REGRESSION.HCC1395_tumor.L008 32 QualityScore Base Substitution 4595913 1105.58 36.00 32.00 4.00 After
REGRESSION.HCC1395_tumor.L008 33 QualityScore Base Substitution 495366 81.78 36.00 33.00 3.00 After
REGRESSION.HCC1395_tumor.L008 45 QualityScore Base Insertion 10990089 458.83 44.00 45.00 -1.00 After
REGRESSION.HCC1395_tumor.L008 45 QualityScore Base Deletion 10990089 1015.37 41.00 45.00 -4.00 After
REGRESSION.HCC1395_tumor.L008 8 QualityScore Base Substitution 2387 424.35 8.00 8.00 0.00 After
REGRESSION.HCC1395_tumor.L008 9 QualityScore Base Substitution 52944 7554.85 8.00 9.00 -1.00 After
16414 rows