File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/b3e77392569f56e1b142a501449ec5/.command.log
Size
1.6 KB
Task
DAQ:SAMTOOLS_MERGE (Sig_18_tissue)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/b3e77392569f56e1b142a501449ec5/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/8c4caad810b4a7322549854bf5bba4/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/c44a8c41d100415cf31dbbe7d43687/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/e278748d47e8b22f7c2ee11c731daa/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/3048c40bcbe5f7b3f9315461eee619/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7183b2fb5fe91a60679bfeb941468c/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/b3e77392569f56e1b142a501449ec5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/a9b852ea063b99d4991a18790ef681/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/14b4523a79aeb80fbb83a5e0cd2335/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/ca1d8033fc5954544ba73dd0207742/Sig_18_tissue.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory