File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/cae2832c91de9ebf477e6976bf58e8/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T18:50:10.069719Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:10.071831Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:10.071862Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:10.071867Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:10.071872Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXJOSSFt'
[2026-05-27T18:50:10.071876Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:10.071881Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:10.071884Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:10.071888Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-05-27T18:50:10.071891Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:10.071895Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:10.071898Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:10.071902Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:10.071906Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:10.072818Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:10.072881Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:10.078798Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:10.079588Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:10.079834Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:10.080006Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:10.080214Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.080868Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.080961Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.081030Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.081146Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.081211Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.081525Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.081887Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.082070Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.082262Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.082336Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.082454Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.082531Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.082880Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.083313Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.084005Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.085687Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.085841Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:10.086474Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.086924Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.087126Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.087200Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.087315Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.087386Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.087500Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.087563Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.088208Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.088458Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.088601Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.088667Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.088774Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.088841Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.088964Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.089025Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.089135Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.089196Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.089307Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.089369Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.089535Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.089998Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.090264Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.090324Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.090443Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.090512Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.090622Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.090682Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.090792Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.090906Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.091023Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.091085Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.091188Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.091370Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.091819Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.091879Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.091990Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092051Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092158Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092220Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092324Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092383Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092490Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092548Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092658Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.092728Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.107588Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.108334Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.108406Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.108570Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.108638Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.108721Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.108785Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.108889Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.108955Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.109002Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:10.109518Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.111535Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.112127Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.112465Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.113209Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.113658Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.114071Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.115921Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.116275Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T18:50:10.118290Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.123512Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T18:50:10.127081Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T18:50:10.128799Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T18:50:10.131579Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T18:50:10.134991Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T18:50:10.136370Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T18:50:10.235720Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.235807Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.236499Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.237147Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.240251Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T18:50:10.240753Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T18:50:10.302620Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.303372Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.305575Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T18:50:10.368560Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.369292Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.371884Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T18:50:10.483592Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.484284Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.487105Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T18:50:10.548791Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.549546Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.552471Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T18:50:10.714171Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.714949Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.718103Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T18:50:10.823713Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T18:50:10.829581Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.830380Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.833404Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T18:50:10.863594Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.864282Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.866981Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T18:50:10.896449Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.897128Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.899528Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T18:50:10.905077Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.905734Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.908670Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T18:50:10.913724Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.914363Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.916711Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T18:50:10.931371Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.932000Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.934476Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T18:50:10.948014Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.948666Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.951182Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T18:50:10.964785Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965443Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.968042Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T18:50:10.997861Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.998526Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.001044Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T18:50:11.030775Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.031443Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.033881Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T18:50:11.095749Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.096450Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.099332Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T18:50:11.411731Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.411822Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.412440Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.413050Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.416001Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T18:50:11.417257Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T18:50:11.477455Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.477550Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.478184Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.479673Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.481433Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T18:50:11.482480Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T18:50:11.512217Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.512310Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.512894Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.513451Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.516340Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T18:50:11.517412Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T18:50:11.546709Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.547300Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.549977Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T18:50:11.579526Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.580160Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.582780Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T18:50:11.644325Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.644988Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.647396Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T18:50:11.709341Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.709999Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.712551Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T18:50:11.742039Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.742641Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.745425Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T18:50:11.774823Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.775409Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.778008Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T18:50:11.839669Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.840293Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.843505Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:11.904801Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.905418Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.908471Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T18:50:11.937654Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.938247Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.940513Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T18:50:11.971438Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.972012Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.974412Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T18:50:12.036347Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.036936Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.039450Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T18:50:12.053076Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.053630Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.056307Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T18:50:12.069671Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.070212Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.072824Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T18:50:12.086408Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.086484Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.086973Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.087627Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.089503Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T18:50:12.091835Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T18:50:12.121369Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.121441Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.121907Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.122451Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.124412Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T18:50:12.126593Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T18:50:12.140141Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.140658Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.142992Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T18:50:12.156737Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.157208Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.159611Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T18:50:12.173132Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.173623Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.176092Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T18:50:12.177607Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.178109Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.180940Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T18:50:12.210201Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.210280Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.210746Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.211370Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.214419Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:12.215489Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T18:50:12.243670Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.244162Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.246637Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T18:50:12.261161Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.261635Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.263929Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:12.277623Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.309552Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.313158Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.313592Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.316140Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T18:50:12.329594Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.330036Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.332545Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T18:50:12.345898Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.361676Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.393559Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.393974Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.397028Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T18:50:12.426237Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.740871Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.741385Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.743925Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T18:50:12.757416Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.757822Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.760057Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T18:50:12.773768Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.789516Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.953603Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.953991Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.956758Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T18:50:12.986134Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.986375Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.986505Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.987058Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.987537Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.990610Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:12.992422Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:12.992921Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:13.019588Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.019658Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.019681Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.019877Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.020174Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.022914Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:13.023785Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:13.052046Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.052111Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.052291Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.054365Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:13.084183Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.753279Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:20.626608Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:20.626608Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] 
[2026-05-27T18:50:20.626608Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:20.626662Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] 
[2026-05-27T18:50:20.626670Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:20.626675Z] [nf-fccae2832c91de9ebf477e6976bf58e8-a193e-hf728] [585_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec