File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/37c45dd5686dd5a10bec917fc71278/.command.log
Size
87.4 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr4_22420786-22421189.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/37c45dd5686dd5a10bec917fc71278/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/bfa67d0b98a4e5b82b2b677c7e210c/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/bfa67d0b98a4e5b82b2b677c7e210c/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/37c45dd5686dd5a10bec917fc71278/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T18:50:08.192811Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:08.196259Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:08.196291Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:08.196298Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:08.196303Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXx64AXu'
[2026-05-27T18:50:08.196307Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:08.196312Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:08.196333Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:08.196340Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:08.196344Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:08.196347Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:08.196351Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:08.196355Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:08.196359Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:08.197262Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:08.197389Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:08.203157Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:08.204013Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:08.204210Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:08.204477Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:08.204806Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.205249Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.205338Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.205409Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.205524Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.205590Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.205706Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.205769Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.206010Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.206295Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.206475Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.206643Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.206716Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.207042Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.207436Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.207870Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.207996Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.209752Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.210477Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:08.210728Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.211201Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.211340Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.211666Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.211737Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.211852Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.211916Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.212039Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.212105Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.212216Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.212283Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.212417Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.212489Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.212630Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.212987Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.213428Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.213725Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.213838Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.213901Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214020Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214083Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214234Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214298Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214412Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214481Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214589Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214651Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.214776Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.215337Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.215911Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.215993Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216114Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216185Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216298Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216382Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216499Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216561Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216674Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216741Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.216923Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.217659Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.217833Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.217909Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.218060Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.218129Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.218242Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.218312Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.218434Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.218606Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.219227Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.219294Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.219405Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.219469Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.219579Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.219643Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.221008Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.221186Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.221831Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.221904Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222016Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222079Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222191Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222259Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222372Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222433Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222540Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222605Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222715Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.222821Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.223024Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.223651Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.223768Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.223834Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.223940Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.224004Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.224142Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.224211Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.240445Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.240723Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.241690Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.241744Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.241946Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.242419Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.242778Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.242932Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.243518Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.243847Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.244631Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.244988Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.247112Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.247747Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.248160Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T18:50:08.248579Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.249193Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.249670Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.250533Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:08.252979Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.253482Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T18:50:08.256082Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T18:50:08.259620Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T18:50:08.263585Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T18:50:08.266309Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T18:50:08.269492Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T18:50:08.270726Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T18:50:08.985983Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.986084Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.987017Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.987330Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.990533Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T18:50:08.991682Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T18:50:09.202899Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.203963Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.207076Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T18:50:09.236376Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.237341Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.240312Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T18:50:09.241152Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.242074Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.244959Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T18:50:09.607006Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.607089Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.608191Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.608581Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.611962Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T18:50:09.612344Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T18:50:09.640993Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.641990Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.644502Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T18:50:09.756265Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.757288Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.760150Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T18:50:09.789285Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.790264Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.792959Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T18:50:09.822219Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.823210Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.826432Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T18:50:09.831120Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.831969Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834791Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T18:50:10.096739Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.097761Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.100627Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T18:50:10.129808Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.130791Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.133824Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T18:50:10.295347Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.296363Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.299335Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T18:50:10.510951Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.512377Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.515264Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T18:50:10.544569Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.545701Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.548503Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T18:50:10.577572Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.578464Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.581083Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T18:50:10.742689Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.743652Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.746606Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T18:50:10.858274Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.858355Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.859257Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.859748Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.862590Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T18:50:10.863809Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T18:50:10.892157Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.893095Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.896055Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T18:50:10.925047Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.925929Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.928810Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T18:50:10.957994Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.958894Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.961792Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T18:50:10.990933Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.991710Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.994644Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T18:50:11.056070Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.057085Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.059773Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T18:50:11.089055Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.090287Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.090577Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.091951Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.094567Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T18:50:11.095573Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T18:50:11.156099Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.156991Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.159885Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T18:50:11.173021Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.173848Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.176217Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T18:50:11.189610Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.190423Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.192827Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T18:50:11.206241Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.207130Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.209899Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T18:50:11.321453Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.322360Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.325432Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T18:50:11.486775Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.487783Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.490373Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T18:50:11.519771Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.519855Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.520660Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.520958Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.523921Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T18:50:11.525226Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T18:50:11.553347Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.554132Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.556625Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T18:50:11.586082Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.586936Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.589542Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T18:50:11.618919Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.619730Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.622160Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T18:50:11.651857Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.652697Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.655384Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T18:50:11.684722Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.685486Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.688091Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T18:50:11.749531Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.750417Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.753245Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T18:50:11.782637Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.783424Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.786055Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T18:50:11.947564Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.948385Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.950991Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T18:50:11.980238Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.981005Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.983514Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T18:50:11.996779Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.997614Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.000078Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T18:50:12.161830Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.161906Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.161934Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.162822Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.163179Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.163771Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.167851Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T18:50:12.169137Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T18:50:12.170236Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T18:50:12.228354Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.228428Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.229123Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.229358Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.232368Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T18:50:12.233385Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T18:50:12.744843Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.744936Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.744958Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.745656Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.746069Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.747981Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.748762Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T18:50:12.751401Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T18:50:12.752548Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T18:50:12.780683Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.781546Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.784303Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:12.845489Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.846208Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.849056Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T18:50:12.878215Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.879206Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.879422Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.881694Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.882278Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T18:50:12.884526Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T18:50:12.885319Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.885869Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.888275Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T18:50:12.917743Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.918381Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.920901Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T18:50:12.950387Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.951047Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.953453Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T18:50:12.982906Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.982983Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.983623Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.983859Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.986509Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T18:50:12.987543Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T18:50:13.015889Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.015969Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.016579Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.016928Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.019679Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T18:50:13.020688Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T18:50:13.081199Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.081842Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.084583Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T18:50:13.113769Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.114448Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.117021Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T18:50:13.130266Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.130867Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.133851Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T18:50:13.146835Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.147566Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.150254Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T18:50:13.163490Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.164300Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.167061Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T18:50:13.228385Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.228960Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.231821Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T18:50:13.261053Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.261659Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.264420Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T18:50:13.726604Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.727258Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.730154Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T18:50:13.759248Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.759861Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.762564Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T18:50:13.791807Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.792451Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.794984Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:13.856581Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.856657Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.857247Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.857521Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.860204Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:13.861402Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T18:50:13.889707Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.890199Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.892841Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T18:50:13.893802Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.894297Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.897005Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T18:50:13.926369Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.926431Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.926881Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.927144Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.929804Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T18:50:13.930792Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T18:50:13.959047Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.959094Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.974840Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.974905Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.975324Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.975720Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.978328Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T18:50:13.979353Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T18:50:14.007915Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.007979Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.071976Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.072491Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.074987Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T18:50:14.104488Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.104548Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.104968Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.107345Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T18:50:14.136763Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.168652Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.169088Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.171501Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T18:50:14.200960Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.264945Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.265579Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.267796Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T18:50:14.297429Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.297732Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.297861Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.298168Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.298656Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.302362Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.303540Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.304532Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:14.331079Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.331130Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.331150Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.331371Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.331636Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.333965Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.357370Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.363936Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.363986Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.364188Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.366595Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:14.396183Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:18.819565Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:27.085068Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:27.085068Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] 
[2026-05-27T18:50:27.085068Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:27.085136Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] 
[2026-05-27T18:50:27.085143Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:27.085151Z] [nf-7637c45dd5686dd5a10bec917fc71278-e0715-47fwr] [585_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec