File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/2c7ed89d9f4e3938d2b9580993d3a2/.command.err
Size
1.2 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-_q9wb92y because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:52:12,773 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:52:13,803 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:52:14,007 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:52:15,331 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:52:15,560 - cnv_pipe.batch.run_model - INFO - Processing cluster 84 with 158 probes
2026-05-27 18:52:16,077 - cnv_pipe.batch.run_model.cluster84 - INFO - Child process started for cluster 84 with 158 probes
2026-05-27 18:53:20,768 - cnv_pipe.batch.run_model.cluster84 - INFO - Child process finished cluster 84. Wrote cluster_84_samples.csv and cluster_84_params.csv
2026-05-27 18:53:20,769 - cnv_pipe.batch.run_model - INFO - Cluster 84 finished in 65.21 seconds. Status: SUCCESS