[2026-05-27T18:50:09.158749Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:09.161093Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:09.161128Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:09.161135Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:09.161139Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXaKRB8Q'
[2026-05-27T18:50:09.161144Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:09.161149Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:09.161153Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:09.161157Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:09.161161Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:09.161164Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:09.161168Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:09.161171Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:09.161175Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:09.162170Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:09.162293Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:09.168160Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:09.168744Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:09.168971Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:09.169380Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:09.169659Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.170134Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.170237Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.170377Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.170560Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.170646Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.171065Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.171336Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.172014Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.173998Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:09.174410Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.174573Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.174737Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.174809Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.174933Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.175001Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.175115Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.175184Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.175301Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.175366Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.175487Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.175768Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176054Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176126Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176244Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176321Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176440Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176504Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176617Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176682Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176793Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176861Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.176991Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.177108Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.177451Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.177724Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.178197Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.178302Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.178433Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.178517Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.178656Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.178746Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.178881Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.178954Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.179069Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.179137Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.179372Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.179502Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.180122Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.180553Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.180683Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.180752Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.180880Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.180943Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.181054Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.181132Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.181250Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.181318Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.181440Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.181506Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.181786Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.182280Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.182416Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.182494Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.182604Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.182684Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.182796Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.182877Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.183728Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.184163Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.184293Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.184357Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.184466Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.184529Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.185967Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.186550Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.186694Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.186763Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.186878Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.186944Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.187062Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.187127Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.187239Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.187302Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.187413Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.187488Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.187641Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188277Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188391Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188456Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188570Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188637Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188744Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188807Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188920Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.188980Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.189091Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.189154Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.205899Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.206475Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.206626Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.206773Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.207770Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.207910Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.207998Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.208526Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.208770Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.208996Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.209399Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.210039Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.210594Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.210809Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.211597Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.212030Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:09.212897Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.215301Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.215960Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:09.216747Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.219171Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T18:50:09.223292Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-05-27T18:50:09.227991Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-05-27T18:50:09.228520Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T18:50:09.231799Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-05-27T18:50:09.233057Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T18:50:09.233968Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-05-27T18:50:09.297606Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.297671Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.297693Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.298561Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.299002Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.299519Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.304319Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T18:50:09.305146Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T18:50:09.305452Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T18:50:09.332909Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.333842Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.336345Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-05-27T18:50:09.365986Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.366985Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.369652Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-05-27T18:50:10.032450Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.033493Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.036667Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T18:50:10.037195Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.037982Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.040830Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T18:50:10.070265Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.071351Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.074622Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-05-27T18:50:10.079078Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.080033Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.082957Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-05-27T18:50:10.095730Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.096599Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.099172Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-05-27T18:50:10.112306Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.113201Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.116173Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-05-27T18:50:10.377812Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.378833Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.381667Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-05-27T18:50:10.410997Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.412015Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.414877Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T18:50:10.476580Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.477643Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.480680Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T18:50:10.541812Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.542763Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.545470Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T18:50:10.574707Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.575741Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.578642Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:10.740394Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.741401Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.744228Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-05-27T18:50:10.855813Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.856750Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.859788Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:10.889053Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.890006Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.892812Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-05-27T18:50:10.954206Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.955109Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.957761Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-05-27T18:50:10.987199Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.988135Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.991054Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T18:50:11.052560Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.053539Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.056467Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-05-27T18:50:11.086227Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.087146Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.089979Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-05-27T18:50:11.301870Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.302950Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.305787Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-05-27T18:50:11.417301Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.418313Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.421314Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-05-27T18:50:11.421901Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.422631Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.425223Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-05-27T18:50:11.454600Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.455669Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.458301Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T18:50:11.487558Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.488439Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.491576Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-05-27T18:50:11.552589Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.553509Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.556176Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-05-27T18:50:11.585555Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.586495Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.589448Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-05-27T18:50:11.700809Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.701961Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.704839Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-05-27T18:50:11.916471Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.917431Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.920455Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-05-27T18:50:11.949394Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.950246Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.953255Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-05-27T18:50:12.265232Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.266201Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.269262Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:12.330948Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.331832Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.334560Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:12.396100Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.397023Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.400098Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-05-27T18:50:12.511355Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.512245Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.515057Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-05-27T18:50:12.515914Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.516986Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.519580Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T18:50:12.581035Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.581132Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.582042Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.582474Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.585712Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T18:50:12.586727Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:12.647033Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.647138Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.647943Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.648175Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.651170Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T18:50:12.652113Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T18:50:12.680504Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.681215Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.683670Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T18:50:12.713074Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.713886Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.716710Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T18:50:12.745737Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.745813Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.746568Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.746836Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.749701Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T18:50:12.750525Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:12.778872Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.779707Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.782423Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T18:50:12.811620Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.812411Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.815051Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T18:50:12.828225Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.828978Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.831452Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-05-27T18:50:12.860947Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.861734Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.864564Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T18:50:12.869694Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.870436Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.872946Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-05-27T18:50:12.902351Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.902454Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.903341Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.903645Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.906329Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T18:50:12.907395Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-05-27T18:50:12.935645Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.936511Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.938952Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-05-27T18:50:12.968387Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.969326Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.971857Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:13.133462Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.134614Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.137727Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T18:50:13.166585Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.167549Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.170875Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T18:50:13.231559Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.231649Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.232588Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.232908Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.235698Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-05-27T18:50:13.236826Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-05-27T18:50:13.249027Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.249959Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.252609Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T18:50:13.265759Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.265842Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.266617Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.267003Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.270136Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-05-27T18:50:13.271138Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:13.299380Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.300198Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.302882Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-05-27T18:50:13.315975Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.316736Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.319618Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T18:50:13.332491Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.333315Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.335876Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:13.365168Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.365956Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.368926Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-05-27T18:50:13.373692Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.374494Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.376801Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T18:50:13.438474Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.439303Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.441931Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-05-27T18:50:13.471204Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.472017Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.474568Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-05-27T18:50:14.087093Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.087918Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.090873Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-05-27T18:50:14.119956Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.120831Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.123669Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-05-27T18:50:14.184879Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.185591Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.188347Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-05-27T18:50:14.217452Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.218248Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.221158Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T18:50:14.250093Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.250908Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.253475Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T18:50:14.282704Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.283504Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.286408Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-05-27T18:50:14.287300Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.288015Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.290608Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:14.319876Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.319965Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.320749Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.321273Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.324218Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:14.324837Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-05-27T18:50:14.353405Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.353476Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.354151Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.354441Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.357133Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T18:50:14.357748Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-05-27T18:50:14.386494Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.386602Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.387472Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.387819Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.390670Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-05-27T18:50:14.391743Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-05-27T18:50:14.403944Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.404642Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.407428Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-05-27T18:50:14.436591Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.436680Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.437377Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.440066Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-05-27T18:50:14.441069Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.473185Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.587493Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.588233Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.591169Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:14.620369Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.985224Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.985884Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.988609Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:15.049912Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.615189Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.615833Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.618703Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-05-27T18:50:15.679901Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.546366Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.546908Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.549760Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-05-27T18:50:16.579062Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.643796Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.644296Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.647060Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-05-27T18:50:21.708313Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.708623Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.708761Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.709031Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.709504Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.713013Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:21.714441Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:21.715415Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:21.742597Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.742661Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.742684Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.742884Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.743149Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.745877Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:21.771685Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:21.775608Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.775663Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.775837Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.778227Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:21.807726Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:28.125420Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:42.280810Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:42.280810Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] 
[2026-05-27T18:50:42.280810Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:42.280882Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] 
[2026-05-27T18:50:42.280890Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:42.280897Z] [nf-432361482120e3b59d8843b73cb4a973-ed7aa-qnp2z] [584_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec