Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/3300bc457771f74b01342f0d89c948/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/cd017da0b6ae43c0f81ba214de8efc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/cd017da0b6ae43c0f81ba214de8efc/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-1xr6onnm because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:11,731 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:12,560 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:12,749 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:13,798 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:13,995 - cnv_pipe.batch.run_model - INFO - Processing cluster 808 with 164 probes
2026-05-27 18:54:14,376 - cnv_pipe.batch.run_model.cluster808 - INFO - Child process started for cluster 808 with 164 probes
2026-05-27 18:55:03,844 - cnv_pipe.batch.run_model.cluster808 - INFO - Child process finished cluster 808. Wrote cluster_808_samples.csv and cluster_808_params.csv
2026-05-27 18:55:03,846 - cnv_pipe.batch.run_model - INFO - Cluster 808 finished in 49.85 seconds. Status: SUCCESS