cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:161000001, elapsed 0.1s, est remaining 2.3s, peak mem 322MB, user 0.2s, sys 3.0s, output queue size 8
progress 10% @chr2:72000001, elapsed 0.2s, est remaining 2.0s, peak mem 526MB, user 0.4s, sys 5.8s, output queue size 41
progress 15% @chr2:234000001, elapsed 0.3s, est remaining 1.8s, peak mem 629MB, user 0.6s, sys 8.7s, output queue size 12
progress 20% @chr3:155000001, elapsed 0.4s, est remaining 1.7s, peak mem 779MB, user 0.7s, sys 11.6s, output queue size 17
progress 25% @chr4:117000001, elapsed 0.5s, est remaining 1.5s, peak mem 896MB, user 0.9s, sys 14.3s, output queue size 7
progress 30% @chr5:68000001, elapsed 0.6s, est remaining 1.4s, peak mem 973MB, user 1.1s, sys 17.1s, output queue size 18
progress 35% @chr6:64000001, elapsed 0.7s, est remaining 1.3s, peak mem 1018MB, user 1.3s, sys 19.8s, output queue size 2
progress 40% @chr7:53000001, elapsed 0.8s, est remaining 1.2s, peak mem 1067MB, user 1.5s, sys 22.6s, output queue size 7
progress 45% @chr8:58000001, elapsed 0.9s, est remaining 1.1s, peak mem 1138MB, user 1.7s, sys 25.4s, output queue size 3
progress 50% @chr9:75000001, elapsed 1.0s, est remaining 1.0s, peak mem 1237MB, user 1.9s, sys 28.3s, output queue size 18
progress 55% @chr10:96000001, elapsed 1.1s, est remaining 0.9s, peak mem 1300MB, user 2.0s, sys 31.0s, output queue size 6
progress 60% @chr11:121000001, elapsed 1.2s, est remaining 0.8s, peak mem 1373MB, user 2.3s, sys 33.8s, output queue size 2
progress 65% @chr12:117000001, elapsed 1.3s, est remaining 0.7s, peak mem 1429MB, user 2.5s, sys 36.6s, output queue size 32
progress 70% @chr14:58000001, elapsed 1.4s, est remaining 0.6s, peak mem 1480MB, user 2.7s, sys 39.4s, output queue size 3
progress 75% @chr16:17000001, elapsed 1.5s, est remaining 0.5s, peak mem 1517MB, user 2.9s, sys 42.4s, output queue size 8
progress 80% @chr18:1000001, elapsed 1.6s, est remaining 0.4s, peak mem 1544MB, user 3.1s, sys 45.3s, output queue size 10
progress 85% @chr20:23000001, elapsed 1.7s, est remaining 0.3s, peak mem 1583MB, user 3.2s, sys 48.5s, output queue size 18
progress 90% @chrX:46000001, elapsed 2.0s, est remaining 0.2s, peak mem 2785MB, user 6.2s, sys 50.1s, output queue size 114
progress 95% @chrY:43000001, elapsed 2.1s, est remaining 0.1s, peak mem 2803MB, user 8.5s, sys 50.8s, output queue size 276
progress 100% @chr21:41000001, elapsed 4.1s, est remaining 0.0s, peak mem 2819MB, user 20.7s, sys 52.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52291134
output file size: 74381931
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.022 real
ReadQualCal::delayed_init: 1 calls 0.008 user 0.002 sys 0.026 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.389 user 6.347 sys 8.048 real
done: 1 calls 0.350 user 0.272 sys 0.625 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.000 sys 4.142 real
fetch: 3219322 calls 0.189 user 5.837 sys 6.494 real
fetch_reads: 3219322 calls 0.338 user 6.061 sys 6.592 real
fetch_ref: 13318 calls 0.029 user 0.020 sys 0.055 real
fetch_vcf: 13318 calls 1.275 user 0.045 sys 1.408 real
idle: 2138 calls 1.851 user 0.349 sys 78.773 real
init: 1 calls 0.013 user 0.002 sys 0.032 real
update: 13537 calls 6.414 user 1.154 sys 8.178 real
write: 3219322 calls 7.964 user 6.484 sys 14.232 real
overall: 2956898304 mem 25.992 user 53.326 sys 5.449 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.021 user 0.003 sys 0.031 real
done: 1 calls 0.047 user 0.013 sys 0.064 real
idle: 61 calls 0.002 user 0.000 sys 31.383 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83664896 mem 0.064 user 0.053 sys 1.059 real