Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/3300bc457771f74b01342f0d89c948/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/cd6ee21eb6aab560aad8ee604a88d9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/cd6ee21eb6aab560aad8ee604a88d9/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ey4w7hip because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:20,302 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:21,137 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:21,313 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:22,276 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:22,447 - cnv_pipe.batch.run_model - INFO - Processing cluster 861 with 197 probes
2026-05-27 18:54:22,833 - cnv_pipe.batch.run_model.cluster861 - INFO - Child process started for cluster 861 with 197 probes
2026-05-27 18:55:21,314 - cnv_pipe.batch.run_model.cluster861 - INFO - Child process finished cluster 861. Wrote cluster_861_samples.csv and cluster_861_params.csv
2026-05-27 18:55:21,316 - cnv_pipe.batch.run_model - INFO - Cluster 861 finished in 58.87 seconds. Status: SUCCESS