File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/a75fa0114d9c262273b46a63045fbc/.command.err
Size
86.1 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeG0Rjc/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeG0Rjc/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXeG0Rjc/chr4_22420786-22421189.bed.gz.tbi
[2026-05-27T18:50:10.955589Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:10.956308Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:10.956321Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:10.956326Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:10.956330Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXeG0Rjc'
[2026-05-27T18:50:10.956334Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:10.956340Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:10.956344Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:10.956348Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:10.956353Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:10.956358Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:10.956363Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:10.956366Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:10.956372Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:10.957165Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:10.957237Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:10.963047Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:10.963879Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:10.964083Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:10.964335Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:10.964661Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965115Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965202Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965273Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965387Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965453Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965572Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965635Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965779Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.966117Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.966522Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.966786Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.966897Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.967826Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.968131Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.969643Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.970327Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.970505Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:10.970969Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971223Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971426Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971492Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971603Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971669Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971777Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971837Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971955Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.972020Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.972130Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.972194Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.972841Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.972942Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973062Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973123Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973239Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973305Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973411Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973474Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973579Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973641Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973751Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973811Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.973931Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.974324Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.974733Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.974807Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.974918Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.975028Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.975163Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.975266Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.975394Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.975457Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.975567Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.975628Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.975765Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.976123Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.976795Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.976869Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.976975Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977040Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977150Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977211Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977322Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977384Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977490Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977558Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977669Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.977731Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.978062Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.978580Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.979507Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.979619Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.979747Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.979823Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.981336Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.981899Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982027Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982099Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982212Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982277Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982387Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982448Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982561Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982623Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982730Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.982800Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.983159Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.983710Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.983823Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.983889Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.984004Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.984075Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.984181Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.984244Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.984354Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.984418Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.000094Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.000811Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.000937Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.001187Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.001563Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.002529Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.002666Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.002860Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.003025Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.003425Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.003825Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.004007Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:11.004391Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.004672Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:11.005056Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.006133Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.007144Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.008031Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.009223Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.011430Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T18:50:11.016988Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T18:50:11.019444Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T18:50:11.021730Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T18:50:11.024462Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T18:50:11.029437Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T18:50:11.031468Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T18:50:11.032103Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T18:50:11.595869Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.596949Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.599937Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T18:50:11.811624Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.812687Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.815742Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T18:50:11.876974Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.878037Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.881029Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T18:50:12.142999Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.144010Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.147204Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T18:50:12.408881Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.409861Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.413072Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T18:50:12.524179Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.524288Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.525264Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.525599Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.528974Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T18:50:12.529683Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T18:50:12.533364Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.534150Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.537001Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T18:50:12.566081Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.566173Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.567114Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.567470Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.570754Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:12.571539Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T18:50:12.631851Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.632922Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.635756Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T18:50:12.797267Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.797345Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.798295Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.798539Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.801617Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T18:50:12.802552Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T18:50:12.832401Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.833766Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.834218Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.836699Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.837082Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T18:50:12.839455Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T18:50:12.869083Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.870092Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.872555Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T18:50:12.885862Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.885940Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.886806Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.887148Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.889850Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T18:50:12.890943Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T18:50:12.902849Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.903721Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.906186Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T18:50:12.919640Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.920529Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.923258Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T18:50:12.952612Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.953534Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.956071Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:13.017692Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.018945Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.021571Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T18:50:13.283440Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.284416Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.287490Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T18:50:13.316409Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.317752Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.320540Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T18:50:13.482106Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.483025Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.486193Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T18:50:13.486949Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.487838Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.490548Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T18:50:13.953102Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.953993Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.956855Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T18:50:14.018228Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.019134Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.021992Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T18:50:14.051255Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.051341Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.052158Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.052427Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.055071Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T18:50:14.056377Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T18:50:14.084515Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.086138Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.086449Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.088555Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.089120Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T18:50:14.091406Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T18:50:14.120578Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.120676Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.121702Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.122108Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.124863Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T18:50:14.125796Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T18:50:14.186201Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.186366Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.186416Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.187305Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.187650Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.188155Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.191037Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T18:50:14.192963Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T18:50:14.194183Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T18:50:14.221742Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.221835Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.222915Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.223305Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.226195Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T18:50:14.227393Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T18:50:14.255501Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.256738Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.259340Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T18:50:14.320867Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.321943Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.324586Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T18:50:14.386007Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.387386Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.390091Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T18:50:14.451550Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.452726Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.455437Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T18:50:14.484815Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.485833Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.488682Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T18:50:14.493513Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.494233Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.497249Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T18:50:14.497929Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.498501Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.500899Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T18:50:14.530396Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.531162Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.534207Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T18:50:14.646065Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.647074Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.649791Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T18:50:14.679067Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.680057Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.682700Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:14.744254Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.745082Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.748418Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T18:50:14.809291Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.809384Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.810081Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.810561Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.814086Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T18:50:14.814909Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T18:50:14.975675Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.976581Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.979429Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T18:50:15.040687Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.041442Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.044401Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T18:50:15.105631Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.106623Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.109533Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T18:50:15.321185Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.322069Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.324770Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T18:50:15.436400Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.436486Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.437170Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.437442Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.440559Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T18:50:15.441478Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T18:50:15.469860Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.469944Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.470561Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.470907Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.473696Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T18:50:15.474584Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T18:50:15.503168Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.503271Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.503882Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.504225Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.507165Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T18:50:15.508350Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T18:50:15.568467Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.569137Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.571869Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T18:50:15.733395Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.734106Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.736829Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T18:50:15.798264Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.798954Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.801916Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T18:50:15.863108Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.863731Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.866953Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T18:50:15.879991Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.880596Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.883249Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T18:50:15.912703Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.913309Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.915735Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T18:50:16.328126Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.328751Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.331734Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T18:50:16.336535Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.337102Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.339856Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T18:50:16.369251Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.369874Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.373116Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T18:50:16.386000Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.386585Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.389570Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T18:50:16.418701Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.418783Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.419355Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.419672Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.422243Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T18:50:16.423159Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T18:50:16.452492Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.452583Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.453119Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.453381Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.456825Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T18:50:16.457817Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T18:50:16.469664Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.470244Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.472837Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T18:50:16.502282Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.502863Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.505145Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T18:50:16.534765Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.535350Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.538571Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T18:50:16.599546Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.600129Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.602822Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T18:50:16.615895Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.616422Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.619803Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T18:50:16.632441Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.648323Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.712439Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.712943Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.715517Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T18:50:16.744802Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.909205Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.909774Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.912760Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T18:50:16.941793Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.156257Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.156799Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.159617Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T18:50:17.188730Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.188788Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.189225Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.191750Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T18:50:17.221068Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.285070Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.285541Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.287865Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T18:50:17.317409Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.632289Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.632784Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.635276Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T18:50:17.664741Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.665030Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.665164Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.665481Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.665959Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.670238Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:17.671621Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:17.672579Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:17.698988Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.699061Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.699080Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.699294Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.699546Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.701891Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:17.702608Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:17.731898Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.731956Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.732119Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.734304Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:17.763878Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.586624Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:29.844749Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:29.844749Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] 
[2026-05-27T18:50:29.844749Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:29.844808Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] 
[2026-05-27T18:50:29.844814Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:29.844821Z] [nf-bca75fa0114d9c262273b46a63045fbc-823b5-swfmf] [605_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec