File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/6c98c92f5f0cb22567af00f809bbde/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T18:50:09.814189Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:09.814706Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:09.814720Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:09.814726Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:09.814731Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXK8CtEv'
[2026-05-27T18:50:09.814736Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:09.814743Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:09.814752Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:09.814756Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-05-27T18:50:09.814761Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:09.814767Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:09.814772Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:09.814778Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:09.814782Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:09.815137Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:09.815238Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:09.822187Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:09.822798Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:09.822933Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:09.823093Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:09.823317Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.824060Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.824169Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.824258Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.824407Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.824559Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.824899Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.825050Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.825330Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.825626Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.825958Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.826386Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.827933Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.828150Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:09.828598Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.828749Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.829062Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.829144Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.829308Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.829407Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.829640Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.829723Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.829864Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.829947Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.830119Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.830273Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.831136Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.831231Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.831376Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.831457Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.831590Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.831673Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.831960Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.832312Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.832452Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.832532Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.832666Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.832744Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.832883Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.832958Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.833098Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.833179Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.833318Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.833496Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.833957Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834036Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834174Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834317Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834456Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834535Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834667Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834747Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.834884Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.835027Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.835620Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.835701Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.835837Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.835917Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.836050Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.836128Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.836266Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.836344Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.836478Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.836613Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.854010Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.854464Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.854564Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.854712Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.855565Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.855726Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.855985Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.856130Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.856581Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.856685Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.857011Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.858526Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.859073Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.859449Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.859733Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.860249Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:09.860346Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.860804Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.861355Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.866970Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T18:50:09.870673Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T18:50:09.873522Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T18:50:09.878013Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T18:50:09.880688Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T18:50:09.944597Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T18:50:09.990465Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.990521Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.991246Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.991447Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.994475Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T18:50:10.462456Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T18:50:10.506135Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.506194Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.506973Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.507246Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.509902Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T18:50:10.510932Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T18:50:10.539009Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.539730Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.542069Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T18:50:10.796711Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T18:50:10.803798Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.803862Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.804647Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.805031Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.808865Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T18:50:10.810176Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T18:50:10.869808Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.869860Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.870589Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.870799Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.874261Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T18:50:10.875457Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T18:50:10.902937Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.903626Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.906398Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T18:50:10.935364Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.936444Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.936684Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.938676Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.940612Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T18:50:10.941885Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T18:50:10.970754Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.971457Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.974263Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T18:50:11.003222Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.003903Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.006669Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T18:50:11.518638Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.519488Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.522747Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T18:50:11.539753Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T18:50:11.551379Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.551427Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.552068Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.552317Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.555097Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T18:50:11.556674Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T18:50:11.584251Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.584300Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.584906Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.585183Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.586615Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.588902Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T18:50:11.589573Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.589812Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T18:50:11.592126Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T18:50:11.621359Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.621406Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.621990Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.622295Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.626042Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T18:50:11.682049Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T18:50:11.686300Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.687042Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.689793Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T18:50:11.750884Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.751555Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.754683Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T18:50:11.783337Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.783984Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.786735Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T18:50:11.815685Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.816315Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.818992Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T18:50:11.848275Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.848972Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.851721Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T18:50:11.962986Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.963694Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.966624Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T18:50:11.995618Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.996254Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.998804Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T18:50:12.028003Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.028062Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.028635Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.028902Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.032074Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T18:50:12.033559Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T18:50:12.060712Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.061300Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.064014Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:12.077012Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.077589Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.080654Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T18:50:12.141523Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.142084Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.144704Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T18:50:12.255909Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.256477Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.259089Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T18:50:12.288094Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.288602Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.291554Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T18:50:12.320424Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.321023Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.323417Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T18:50:12.384712Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.385220Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.387815Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T18:50:12.416950Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.417504Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.420561Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T18:50:12.449198Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.449755Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.452255Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:12.513586Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.514182Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.516960Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:12.529972Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.530544Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.533044Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T18:50:12.562203Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.562684Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.564935Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T18:50:12.594254Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.594661Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.597243Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T18:50:12.626367Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.626865Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.629480Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T18:50:12.740655Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.741132Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.743350Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T18:50:12.772709Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.773133Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.775970Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T18:50:12.837049Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.837519Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.839867Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T18:50:12.869089Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.932907Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.932965Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.933390Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.933603Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.936049Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T18:50:12.936635Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T18:50:12.965828Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.965880Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.129824Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.130263Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.132514Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T18:50:13.145798Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.146210Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.148937Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T18:50:13.177896Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.177957Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.391853Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.391891Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.392246Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.392446Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.395364Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T18:50:13.396242Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T18:50:13.424272Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.424319Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.538092Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.538423Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.540531Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T18:50:13.569976Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.570188Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.570286Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.570459Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.570761Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.574704Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:13.576091Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:13.577165Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:13.603265Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.603313Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.603517Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.603788Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.604431Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.607382Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:13.608437Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:13.637550Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.637595Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.637811Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.639889Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:13.669429Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.485294Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:20.355595Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:20.355595Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] 
[2026-05-27T18:50:20.355595Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:20.355635Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] 
[2026-05-27T18:50:20.355642Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:20.355649Z] [nf-9e6c98c92f5f0cb22567af00f809bbde-296b6-9h4n5] [754_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec