Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/3300bc457771f74b01342f0d89c948/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/32f4d6d5fcb956cf51fecd6eb05ff2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/32f4d6d5fcb956cf51fecd6eb05ff2/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-c85bli5a because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:55,852 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:56,624 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:56,787 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:57,634 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:57,780 - cnv_pipe.batch.run_model - INFO - Processing cluster 1076 with 158 probes
2026-05-27 18:54:58,144 - cnv_pipe.batch.run_model.cluster1076 - INFO - Child process started for cluster 1076 with 158 probes
2026-05-27 18:55:44,226 - cnv_pipe.batch.run_model.cluster1076 - INFO - Child process finished cluster 1076. Wrote cluster_1076_samples.csv and cluster_1076_params.csv
2026-05-27 18:55:44,227 - cnv_pipe.batch.run_model - INFO - Cluster 1076 finished in 46.45 seconds. Status: SUCCESS