cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:109000001, elapsed 0.1s, est remaining 1.1s, peak mem 420MB, user 0.2s, sys 2.2s, output queue size 128
progress 10% @chr2:114000001, elapsed 0.1s, est remaining 0.9s, peak mem 420MB, user 0.5s, sys 9.7s, output queue size 277
progress 15% @chr2:186000001, elapsed 0.1s, est remaining 0.8s, peak mem 420MB, user 0.9s, sys 16.3s, output queue size 400
progress 20% @chr3:97000001, elapsed 0.2s, est remaining 0.7s, peak mem 420MB, user 1.2s, sys 23.1s, output queue size 562
progress 25% @chr4:137000001, elapsed 0.2s, est remaining 0.6s, peak mem 420MB, user 1.7s, sys 29.3s, output queue size 281
progress 30% @chr5:139000001, elapsed 0.2s, est remaining 0.6s, peak mem 420MB, user 2.2s, sys 35.3s, output queue size 442
progress 35% @chr6:18000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 2.5s, sys 41.7s, output queue size 603
progress 40% @chr7:63000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 2.9s, sys 47.2s, output queue size 764
progress 45% @chr8:140000001, elapsed 0.3s, est remaining 0.4s, peak mem 420MB, user 3.1s, sys 50.1s, output queue size 927
progress 50% @chr9:88000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 3.3s, sys 55.1s, output queue size 1088
progress 55% @chr10:96000001, elapsed 0.4s, est remaining 0.3s, peak mem 420MB, user 3.7s, sys 60.4s, output queue size 1249
progress 60% @chr11:55000001, elapsed 0.5s, est remaining 0.3s, peak mem 420MB, user 4.0s, sys 66.2s, output queue size 1412
progress 65% @chr13:49000001, elapsed 0.5s, est remaining 0.3s, peak mem 420MB, user 4.2s, sys 72.7s, output queue size 1573
progress 70% @chr14:98000001, elapsed 0.5s, est remaining 0.2s, peak mem 420MB, user 4.6s, sys 78.6s, output queue size 1735
progress 75% @chr16:20000001, elapsed 0.6s, est remaining 0.2s, peak mem 420MB, user 5.0s, sys 83.8s, output queue size 1897
progress 80% @chr16:48000001, elapsed 0.6s, est remaining 0.1s, peak mem 420MB, user 5.5s, sys 89.5s, output queue size 2059
progress 85% @chr20:16000001, elapsed 0.6s, est remaining 0.1s, peak mem 420MB, user 5.8s, sys 95.5s, output queue size 225
progress 90% @chrX:51000001, elapsed 0.7s, est remaining 0.1s, peak mem 420MB, user 6.2s, sys 100.6s, output queue size 387
progress 95% @chrX:81000001, elapsed 0.7s, est remaining 0.0s, peak mem 420MB, user 6.6s, sys 106.2s, output queue size 715
progress 100% @HLA-DRB1*15:01:01:03:1, elapsed 0.8s, est remaining 0.0s, peak mem 420MB, user 6.8s, sys 119.5s, output queue size 3972
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 50716
output file size: 43808
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.000 user 0.000 sys 0.010 real
"predict_filter": 171 calls 0.015 user 0.018 sys 0.149 real
advance: 3219322 calls 0.695 user 46.890 sys 55.045 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.000 user 0.009 sys 0.830 real
fetch_ref: 448 calls 0.009 user 0.082 sys 0.248 real
idle: 20057 calls 0.497 user 0.311 sys 292.329 real
init: 1 calls 0.233 user 0.086 sys 0.469 real
overall: 440684544 mem 8.120 user 123.339 sys 2.414 real