File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/fa2735f4992a784795b3443abd18d4/.command.log
Size
55.4 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr16_25246607-25247490.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/fa2735f4992a784795b3443abd18d4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/3cfabeb790a6f016a7b8ea9337df7f/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/3cfabeb790a6f016a7b8ea9337df7f/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/fa2735f4992a784795b3443abd18d4/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T18:50:10.641940Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:10.643348Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:10.643374Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:10.643380Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:10.643385Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXb1pbZD'
[2026-05-27T18:50:10.643388Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:10.643393Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:10.643397Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:10.643401Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-05-27T18:50:10.643404Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:10.643408Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:10.643412Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:10.643415Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:10.643419Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:10.644245Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:10.644311Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:10.650028Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:10.650549Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:10.650758Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:10.651113Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:10.651331Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.652177Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.652274Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.652345Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.652564Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.652814Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.652990Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.653527Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.653737Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.655898Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.656197Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.656342Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:10.656846Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.656955Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.657084Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.657154Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.657272Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.657343Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.657458Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.657521Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.657723Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.657828Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658194Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658261Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658376Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658439Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658552Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658616Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658726Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658791Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658924Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.658990Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.659102Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.659174Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.659645Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.659841Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.659953Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660023Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660131Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660196Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660305Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660364Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660474Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660536Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660642Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660704Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660817Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.660931Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.661248Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.661610Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.661728Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.661791Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.661900Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.661960Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.662068Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.662130Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.676484Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.676976Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677268Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677415Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677483Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677563Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677626Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677729Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677796Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:10.677841Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:10.681932Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.682386Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.682738Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.683462Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.684000Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.684484Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.684857Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.685136Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.686694Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.690645Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:10.693491Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T18:50:10.696637Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T18:50:10.700002Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T18:50:10.700257Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T18:50:10.702875Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T18:50:10.704058Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T18:50:10.755151Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T18:50:10.804185Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.804923Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.808192Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:11.470705Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.471374Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.473667Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T18:50:11.536080Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.536157Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.536765Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.536977Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.540000Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T18:50:11.651385Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.652802Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.655767Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T18:50:11.917703Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.918398Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.921254Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T18:50:12.183221Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.183922Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.186570Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:12.216250Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.216907Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.219492Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T18:50:12.280860Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.281568Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.284357Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T18:50:12.396057Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.396744Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.399439Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T18:50:12.461112Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.461818Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.464595Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:12.526483Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.527125Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.530176Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T18:50:12.591386Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.591476Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.592113Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.592525Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.595387Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T18:50:12.596386Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T18:50:12.608774Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.609319Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.612063Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T18:50:12.641483Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.642077Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.644429Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T18:50:12.645970Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.646471Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.648959Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T18:50:12.708522Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T18:50:12.710814Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.710885Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.710911Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.711453Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.712024Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.714028Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.715575Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T18:50:12.716698Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T18:50:12.717578Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T18:50:12.746991Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.747070Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.747093Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.747599Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.748253Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.748577Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.751507Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T18:50:12.752876Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:12.754040Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:12.781049Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.781588Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.784112Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:12.813721Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.814241Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.816572Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:12.847305Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.847805Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.850372Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T18:50:12.880220Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.880762Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.883717Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T18:50:12.945273Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.945830Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.948705Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T18:50:13.010263Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.010810Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.013674Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T18:50:13.042741Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.043236Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.046005Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T18:50:13.107585Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.108108Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.110727Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T18:50:13.173642Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.174196Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.176959Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T18:50:13.288496Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.289064Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.292020Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T18:50:13.353480Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.353982Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.356965Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T18:50:13.518478Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.519024Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.521727Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T18:50:13.583319Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.583868Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.586666Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T18:50:13.615965Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.616056Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.616497Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.617068Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.619602Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:13.620750Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:13.649274Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.649347Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.649368Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.649790Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.651260Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.652106Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.652620Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T18:50:13.655500Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T18:50:13.656217Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T18:50:13.685656Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.685730Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.799871Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.800345Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.803283Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T18:50:13.832558Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.946776Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.947227Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.950051Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T18:50:13.979370Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.995138Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.995502Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.997686Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T18:50:14.060051Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.975905Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.976328Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.979028Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T18:50:15.008413Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.523231Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.523652Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.526212Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T18:50:15.555719Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.220894Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.221255Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.223992Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T18:50:16.253147Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.253378Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.253505Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.254154Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.254852Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.257249Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:16.258832Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:16.259508Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:16.286955Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.288248Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.288454Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.290348Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:16.290918Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.291137Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.293127Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:16.323155Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.323229Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.323389Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.325554Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:16.356210Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:21.229479Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:29.532055Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:29.532055Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] 
[2026-05-27T18:50:29.532055Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:29.532121Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] 
[2026-05-27T18:50:29.532127Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:29.532134Z] [nf-23fa2735f4992a784795b3443abd18d4-4ac6a-9n9l7] [571_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec