Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/40b1f245c7d6cc5a302417d1a26838/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/4e5ffc063a75e1dc2203690bc19417/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/40b1f245c7d6cc5a302417d1a26838/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/4e5ffc063a75e1dc2203690bc19417/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T18:50:06.022638Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:06.035224Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:06.035249Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:06.035254Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:06.035258Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXfH3hW2'
[2026-05-27T18:50:06.035262Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:06.035266Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:06.035270Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:06.035273Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-05-27T18:50:06.035276Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:06.035280Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:06.035283Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:06.035287Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:06.035290Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:06.036146Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:06.036260Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:06.041849Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:06.042337Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:06.042572Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:06.042745Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:06.042939Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.043796Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.043878Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.043947Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.044189Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.044445Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.044537Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.045020Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.045311Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.045550Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.045646Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.046608Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.047057Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.047362Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:06.047683Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048019Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048161Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048231Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048345Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048404Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048585Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048649Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048758Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048825Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048936Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.048998Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.049327Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.049541Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.049659Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.049720Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.049832Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.049900Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.050011Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.050072Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.050178Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.050246Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.050352Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.050414Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.050550Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.050828Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051144Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051207Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051317Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051381Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051489Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051550Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051677Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051795Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.051953Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.052017Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.052134Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.052210Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.052556Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.052899Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.053008Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.053066Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.066705Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.066785Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.066849Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.066983Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.067049Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.067129Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.067192Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.067293Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.067359Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.067407Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:06.069727Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.070397Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.070665Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.070932Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.071152Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.071851Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.072328Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.072743Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.074605Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.082520Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T18:50:06.082891Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T18:50:06.084999Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T18:50:06.085352Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T18:50:06.090121Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:06.090473Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:06.090976Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T18:50:06.091180Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T18:50:06.190890Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.191551Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.194324Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T18:50:06.807144Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.807925Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.810604Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T18:50:06.840164Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.840976Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.843527Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T18:50:06.905106Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.905862Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.908532Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T18:50:06.970009Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.970820Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.973311Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T18:50:07.235455Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.236150Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.239127Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T18:50:07.701724Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.702462Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.704900Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T18:50:07.766992Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.767113Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.767748Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.769178Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.770068Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T18:50:07.772294Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T18:50:07.834035Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.834727Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.837578Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T18:50:07.899365Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.900095Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.902794Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:07.964325Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.965016Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.967599Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:07.997224Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.997843Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.000325Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:08.029856Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.030490Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.033248Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T18:50:08.144955Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.145065Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.145668Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.147089Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.149096Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T18:50:08.149935Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T18:50:08.180556Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.180643Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.181190Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.181824Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.184766Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T18:50:08.185451Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.185887Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T18:50:08.186447Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.188517Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T18:50:08.218318Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.218854Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.221721Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T18:50:08.235126Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.235684Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.237644Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:08.268599Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.269215Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.271609Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T18:50:08.286340Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.286851Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.289734Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T18:50:08.302717Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.303254Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.305623Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T18:50:08.335403Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.335971Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.338590Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:08.339906Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.340404Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.342874Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T18:50:08.404902Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.405491Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.408170Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T18:50:08.670337Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.670448Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.671002Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.671690Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.674246Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T18:50:08.676667Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T18:50:08.737590Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.738225Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.740871Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T18:50:08.802729Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.803344Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.806239Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T18:50:08.835653Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.836252Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.839079Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:08.900849Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.901455Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.904535Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T18:50:08.965944Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.966537Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.969742Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T18:50:09.332379Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.332471Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.333011Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.333391Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.335988Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T18:50:09.337145Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T18:50:09.365593Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.366146Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.368562Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T18:50:09.369882Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.370349Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.372858Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T18:50:09.402733Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.403292Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.405569Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:09.420150Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.420642Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.423000Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T18:50:09.452843Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.453348Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.456219Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T18:50:09.456905Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.488824Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.492531Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.492946Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.495678Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T18:50:09.557472Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.771842Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.772305Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.775004Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T18:50:09.804265Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.219146Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.219236Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.219631Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.220298Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.222942Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T18:50:10.224088Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T18:50:10.254877Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.254955Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.070777Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.071228Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.073885Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T18:50:11.103658Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.318133Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.318573Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.321329Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:11.351017Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.351281Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.351430Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.353097Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.353864Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.355892Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:11.356383Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:11.358383Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:11.386340Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.386418Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.386661Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.386926Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.388918Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.390071Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:11.390742Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:11.453558Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.453653Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.453874Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.456361Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:11.486098Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.700611Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:16.572348Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:16.572348Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] 
[2026-05-27T18:50:16.572348Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:16.572416Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] 
[2026-05-27T18:50:16.572424Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:16.572432Z] [nf-f14e5ffc063a75e1dc2203690bc19417-a454b-xnxsm] [582_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec