Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/85f3afd8b759e8f08f5e882bdecaf5/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/bfa67d0b98a4e5b82b2b677c7e210c/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/bfa67d0b98a4e5b82b2b677c7e210c/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/85f3afd8b759e8f08f5e882bdecaf5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T18:50:06.292304Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:06.292965Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:06.292979Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:06.292984Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:06.292988Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX6YCRiW'
[2026-05-27T18:50:06.292992Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:06.292997Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:06.293001Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:06.293005Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:06.293011Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:06.293015Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:06.293019Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:06.293024Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:06.293029Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:06.293707Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:06.293833Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:06.299838Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:06.300444Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:06.300594Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:06.300833Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:06.301075Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.301934Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.302031Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.302105Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.302513Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.302571Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.302729Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.302868Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.302936Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.303075Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.303416Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.305635Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.305942Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:06.306116Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.306249Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.306314Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.306422Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.306484Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.306591Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.306652Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.306840Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.306906Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.307017Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.307082Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.307324Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.307593Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308011Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308078Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308187Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308253Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308361Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308425Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308554Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308618Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308789Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.308990Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.309519Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.309788Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.309925Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310004Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310118Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310178Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310291Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310390Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310497Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310560Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310672Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.310754Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.311028Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.311486Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.311602Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.311667Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.311775Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.311837Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.311949Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312012Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312123Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312188Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312293Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312356Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312476Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312596Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.312847Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.313277Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.328714Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.329333Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.329447Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.329593Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.330330Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.330382Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.330793Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.331033Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.331635Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.332087Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.332391Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.334082Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.334549Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.334995Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.335728Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.336045Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.337115Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.338512Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:06.340004Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.340630Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T18:50:06.345245Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T18:50:06.348643Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T18:50:06.351403Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T18:50:06.353844Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T18:50:06.357390Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T18:50:06.360046Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T18:50:06.360216Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T18:50:06.423630Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.423718Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.424383Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.424819Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.428208Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T18:50:06.428987Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T18:50:06.789937Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.790709Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.793761Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T18:50:06.854890Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.854989Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.855721Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.856041Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.859083Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T18:50:06.860061Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T18:50:06.888093Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.888847Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.891792Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T18:50:07.003241Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.003939Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.007078Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T18:50:07.118509Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.118621Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.119320Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.119571Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.122337Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T18:50:07.123605Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T18:50:07.151537Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.151634Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.152285Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.152687Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.155760Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:07.156442Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T18:50:07.184898Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.185566Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.188388Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T18:50:07.217520Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.218213Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.221031Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T18:50:07.234124Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.234782Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.237538Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T18:50:07.242508Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.243103Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.245441Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T18:50:07.357265Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.358051Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.360942Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T18:50:07.422315Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.423005Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.426099Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T18:50:07.738368Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.738470Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.739162Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.739524Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.742770Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T18:50:07.743846Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T18:50:07.771828Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.772469Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.775146Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T18:50:07.804413Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.805072Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.807864Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T18:50:07.836867Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.836938Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.837495Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.837984Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.840709Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T18:50:07.841747Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T18:50:07.871291Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.871354Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.871918Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.872216Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.875454Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T18:50:07.876326Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T18:50:07.937026Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.937113Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.937673Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.938234Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.941000Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T18:50:07.942138Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T18:50:07.970318Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.970397Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.970966Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.971504Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.974271Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T18:50:07.975139Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T18:50:08.035752Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.036365Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.039038Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:08.052051Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.052571Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.055052Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T18:50:08.084679Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.085553Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.085769Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.087612Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.088022Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:08.090364Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T18:50:08.151673Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.152307Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.154961Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T18:50:08.184191Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.184780Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.187590Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T18:50:08.188265Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.188686Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.191253Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T18:50:08.220491Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.221085Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.223688Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T18:50:08.224775Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.225200Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.227724Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T18:50:08.241031Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.241530Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.244312Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T18:50:08.249147Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.249612Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.250023Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.251800Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.252285Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T18:50:08.253707Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.254310Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.254666Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T18:50:08.256841Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T18:50:08.286097Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.286175Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.286589Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.286877Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.289488Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T18:50:08.290665Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T18:50:08.318761Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.318820Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.319222Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.319491Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.322589Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T18:50:08.323741Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T18:50:08.351539Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.352031Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.354869Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T18:50:08.383846Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.383911Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.384285Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.384519Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.387162Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T18:50:08.388152Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T18:50:08.416328Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.416412Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.530649Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.531172Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.533939Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T18:50:08.595315Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.659338Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.659787Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.662685Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T18:50:08.691748Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.006244Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.006736Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.009553Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T18:50:09.070680Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.285203Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.285636Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.288538Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T18:50:09.317589Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.431547Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.431963Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.434331Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T18:50:09.463788Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.463852Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.464192Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.466534Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T18:50:09.496070Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.496309Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.496424Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.496744Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.497129Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.500936Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:09.502028Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:09.503046Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:09.529427Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.529488Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.529515Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.529718Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.530210Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.532931Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:09.534706Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:09.562879Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.562942Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.563114Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.565494Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:09.595033Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.963663Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:16.837496Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:16.837496Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] 
[2026-05-27T18:50:16.837496Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:16.837595Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] 
[2026-05-27T18:50:16.837605Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:16.837614Z] [nf-8a85f3afd8b759e8f08f5e882bdecaf5-83ff1-4dch4] [579_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec