[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXaYzy5A/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXaYzy5A/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXaYzy5A/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T18:50:06.611515Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:06.615974Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:06.616008Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:06.616015Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:06.616020Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXaYzy5A'
[2026-05-27T18:50:06.616024Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:06.616032Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:06.616036Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:06.616040Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:06.616044Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:06.616048Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:06.616051Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:06.616055Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:06.616059Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:06.616943Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:06.617036Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:06.622809Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:06.623547Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:06.623790Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:06.624025Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:06.624173Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.624497Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.624584Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.624660Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.624775Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.624841Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.624959Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.625020Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.625329Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.625552Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.625694Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.626228Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.628246Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.628779Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:06.629201Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.629325Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.629455Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.629527Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.629646Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.629718Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.629911Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.629980Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.630095Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.630164Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.630273Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.630386Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.630720Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631017Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631134Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631201Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631312Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631405Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631519Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631582Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631694Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631757Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631868Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.631935Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.632059Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.632238Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.632821Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.632894Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.633006Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.633072Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.633705Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.633771Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.634042Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.634466Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.634647Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.634716Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.634828Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.634893Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.635005Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.635071Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.635188Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.635251Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.635366Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.635434Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.635761Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.636158Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.636274Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.636336Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.636447Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.636511Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.636623Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.636690Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.652470Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.652967Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.653041Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.653209Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.653285Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.653373Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.653438Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.653557Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.653629Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:06.654866Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:06.662731Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.663285Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.663575Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.663986Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.664637Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.665178Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.666038Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.667001Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.667768Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.669939Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:06.673677Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T18:50:06.677159Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:06.677767Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T18:50:06.681192Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:06.683379Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T18:50:06.683589Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T18:50:06.784096Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.784177Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.785208Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.785536Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.788871Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T18:50:06.789667Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T18:50:06.900391Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.901264Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.903896Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T18:50:07.366095Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.366962Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.369863Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T18:50:07.781854Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.782672Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.785694Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:07.814711Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.815453Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.817939Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T18:50:07.847348Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.848041Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.850407Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T18:50:08.112385Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.113221Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.116004Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T18:50:08.236080Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:08.277625Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.277697Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.278354Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.278576Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.281299Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T18:50:08.282302Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T18:50:08.310819Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.311512Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.314066Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T18:50:08.375275Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.376078Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.378384Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:08.439877Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.440614Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.443161Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T18:50:08.705326Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.706109Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.708995Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T18:50:08.870656Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.870730Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.871416Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.871669Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.874654Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T18:50:08.901255Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T18:50:08.904264Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.904330Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.904943Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.905167Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.908011Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T18:50:08.908977Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T18:50:08.913230Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.913744Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.916247Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T18:50:08.945853Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.945918Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.946502Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.947144Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.949742Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T18:50:08.950488Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T18:50:08.979048Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.979695Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.981907Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T18:50:09.344375Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.345087Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.347727Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T18:50:09.376986Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.377574Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.380448Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T18:50:09.491697Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.491781Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.492605Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.492938Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.496076Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T18:50:09.497111Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T18:50:09.525264Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.525872Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.528384Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T18:50:09.690119Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.690784Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.693812Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:09.698651Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.699207Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.701848Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:09.706801Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.707323Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.709651Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T18:50:09.739266Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.739839Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.742192Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T18:50:09.771796Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.772386Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.774722Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T18:50:09.836437Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.836997Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.839673Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T18:50:10.001295Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.001969Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.004967Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T18:50:10.034024Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.034623Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.037099Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T18:50:10.066572Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.067102Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.069913Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:10.131184Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.131793Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.134538Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:10.195767Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.195840Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.196337Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.196694Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.199454Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T18:50:10.200133Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T18:50:10.228675Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.228740Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.229233Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.229491Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.232714Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T18:50:10.260920Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T18:50:10.261753Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.262296Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.264823Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:10.677667Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.678268Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.681301Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T18:50:10.694545Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.695075Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.698058Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T18:50:10.711121Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.711643Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.714235Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T18:50:10.727523Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.727591Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.728044Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.728273Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.730756Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T18:50:10.731585Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:10.744262Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.744717Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.747037Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T18:50:10.760485Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.760953Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.763300Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:10.776724Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.776790Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.777209Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.777484Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.780042Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T18:50:10.781027Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T18:50:10.810300Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.818122Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.818185Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.818578Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.820811Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T18:50:10.850511Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.065104Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.065543Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.068303Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T18:50:11.097587Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.097641Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.098027Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.100372Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T18:50:11.161953Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.225820Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.226372Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.227976Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.228488Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T18:50:11.228855Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.230815Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T18:50:11.260761Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.260822Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.377354Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.377710Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.380148Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T18:50:12.409473Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.409707Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.409824Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.410062Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.410289Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.414464Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:12.415638Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:12.416509Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:12.443154Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.443219Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.443239Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.443430Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.443721Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.445930Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:12.470117Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:12.475991Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.476057Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.476230Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.478469Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:12.508286Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:17.182452Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:25.504644Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:25.504644Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] 
[2026-05-27T18:50:25.504644Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:25.504696Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] 
[2026-05-27T18:50:25.504703Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:25.504709Z] [nf-86444c4c4304d95f94c8828692a3b320-1b6cc-ncbqm] [582_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec