File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/4233d534bedaed6f3ad2ef2e39d1b6/.command.log
Size
87.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr4_22420786-22421189.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/40b1f245c7d6cc5a302417d1a26838/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/4233d534bedaed6f3ad2ef2e39d1b6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/40b1f245c7d6cc5a302417d1a26838/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/4233d534bedaed6f3ad2ef2e39d1b6/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXoRQfPz/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXoRQfPz/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXoRQfPz/chr4_22420786-22421189.bed.gz.tbi
[2026-05-27T18:50:05.798127Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:05.800377Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:05.800387Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:05.800391Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:05.800395Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXoRQfPz'
[2026-05-27T18:50:05.800399Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:05.800404Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:05.800408Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:05.800411Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:05.800415Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:05.800419Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:05.800422Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:05.800426Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:05.800429Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:05.800977Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:05.801082Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:05.807713Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:05.808288Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:05.808517Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:05.808739Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:05.808950Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.809425Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.809522Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.809596Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.809720Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.809792Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.809915Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.810016Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.810340Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.810696Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.810921Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.811400Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.812249Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.813762Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.814237Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:05.814557Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815000Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815163Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815285Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815353Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815542Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815618Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815731Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815799Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815908Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.815969Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.816086Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.816153Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.816516Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.816839Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.816955Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817054Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817197Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817275Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817391Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817482Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817595Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817658Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817774Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.817841Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.818478Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.818568Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.818712Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.818781Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.818889Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.818952Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.819064Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.819181Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.819295Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.819361Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.819576Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.820157Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.820348Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.820427Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.820550Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.820618Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.820759Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.820833Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.820943Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.821013Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.821176Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.821468Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822020Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822092Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822204Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822274Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822387Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822449Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822560Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822627Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822736Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822798Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822906Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.822976Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.824618Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825211Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825355Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825434Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825552Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825617Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825735Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825798Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825912Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.825976Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.826085Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.826154Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.826372Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.826510Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.827485Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.828085Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.828258Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.828330Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.828443Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.828508Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.828624Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.828708Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.842873Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.847139Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.847984Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.848185Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.848293Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.848966Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.849372Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.849895Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.850205Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.850718Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.851337Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.851747Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.852392Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.852854Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.853259Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.855665Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.856077Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T18:50:05.857444Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.862456Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T18:50:05.865514Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T18:50:05.868821Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T18:50:05.869083Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T18:50:05.872012Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T18:50:05.875937Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:05.877098Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T18:50:05.877309Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:05.877843Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T18:50:06.594216Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.595198Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.598136Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T18:50:06.759773Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.760888Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.763886Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T18:50:06.776986Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.778075Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.780689Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T18:50:06.842100Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.843075Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.846095Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T18:50:07.007924Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.008971Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.012014Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T18:50:07.016879Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.017833Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.020485Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T18:50:07.382714Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.383778Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.386898Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T18:50:07.415967Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.417073Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.419996Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T18:50:07.449223Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.450286Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.453005Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T18:50:07.482239Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.483279Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.486284Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T18:50:07.598038Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.599128Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.602339Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T18:50:07.914500Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.914583Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.915772Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.916061Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.919290Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T18:50:07.920273Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T18:50:07.948217Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.949273Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.952283Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T18:50:08.063449Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.064348Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.066885Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T18:50:08.096349Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.097398Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.100381Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T18:50:08.129548Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.130483Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.133518Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T18:50:08.295235Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.296205Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.299421Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T18:50:08.511008Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.512301Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.515605Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T18:50:08.576304Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.576368Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.576392Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.576431Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.577306Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.577636Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.579599Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.580057Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T18:50:08.580675Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.584810Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T18:50:08.586964Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T18:50:08.587232Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T18:50:08.614258Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.615131Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.617780Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T18:50:08.647243Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.648209Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.650742Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T18:50:08.680146Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.681113Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.684140Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T18:50:08.713054Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.713938Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.716289Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T18:50:08.746140Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.747001Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.749901Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T18:50:09.212440Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.212542Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.213393Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.213673Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.216402Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T18:50:09.217542Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T18:50:09.221619Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.222394Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.224993Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T18:50:09.254407Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.254487Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.254508Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.255231Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.255493Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.255939Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.258709Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T18:50:09.261693Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T18:50:09.262723Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T18:50:09.290472Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.291282Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.294232Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T18:50:09.455693Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.456559Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.459275Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T18:50:09.488572Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.488673Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.489443Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.489920Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.492884Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T18:50:09.493886Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T18:50:09.522138Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.522922Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.525561Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T18:50:09.554873Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.555620Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.558278Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T18:50:09.619662Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.620432Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.623497Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T18:50:09.684694Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.685481Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.687899Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T18:50:09.717351Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.718121Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.720955Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T18:50:09.782367Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.783148Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.786026Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T18:50:09.815203Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.815907Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.818675Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T18:50:09.847736Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.848427Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.850989Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T18:50:09.880525Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.881265Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.884353Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T18:50:10.095964Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.096818Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.099750Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T18:50:10.129007Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.129691Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.132402Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T18:50:10.193871Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.193946Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.194653Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.194927Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.198049Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T18:50:10.199203Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T18:50:10.227387Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.228109Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.230597Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T18:50:10.292240Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.293008Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.295750Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T18:50:10.300671Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.301297Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.304057Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T18:50:10.333409Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.334116Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.337102Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T18:50:10.398732Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.398832Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.399494Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.399777Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.403116Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T18:50:10.403626Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T18:50:10.431881Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.432518Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.435410Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T18:50:10.798178Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.798930Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.801715Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T18:50:11.063473Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.064153Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.067230Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T18:50:11.096544Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.097265Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.100206Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T18:50:11.211864Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.212518Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.215452Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T18:50:11.277070Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.277776Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.280612Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T18:50:11.309783Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.309843Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.309866Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.310408Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.310658Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.312272Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.313136Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T18:50:11.315300Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T18:50:11.316324Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T18:50:11.344620Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.344708Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.345252Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.345512Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.348249Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T18:50:11.349111Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:11.378505Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.379049Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.381636Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T18:50:11.395072Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.395624Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.398068Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T18:50:11.399296Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.399762Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.402190Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T18:50:11.415668Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.416225Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.418681Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T18:50:11.423860Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.424349Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.426824Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T18:50:11.431967Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.432408Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.434674Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T18:50:11.448069Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.448582Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.450977Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T18:50:11.464367Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.464428Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.464895Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.465146Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.467840Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T18:50:11.468760Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.469030Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T18:50:11.469479Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.472143Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:11.477367Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.477906Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.480191Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T18:50:11.509864Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.509926Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.509948Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.510349Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.510582Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.513162Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T18:50:11.514089Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T18:50:11.515468Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.515897Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.518161Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T18:50:11.547672Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.549171Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.581059Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.581471Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.583731Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T18:50:11.613393Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.777872Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.778327Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.780567Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T18:50:11.810159Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.024465Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.024971Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.027733Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T18:50:12.056934Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.121094Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.121533Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.124191Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T18:50:12.153453Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.718446Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.718941Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.721225Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T18:50:12.750955Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.751238Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.751358Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.751583Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.751884Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.756068Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:12.757349Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:12.758495Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:12.784636Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.784705Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.784727Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.784914Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.785334Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.787806Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:12.788570Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:12.817740Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.817803Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.817971Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.819898Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:12.849917Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:16.421583Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:24.689122Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:24.689122Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] 
[2026-05-27T18:50:24.689122Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:24.689190Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] 
[2026-05-27T18:50:24.689198Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:24.689205Z] [nf-c14233d534bedaed6f3ad2ef2e39d1b6-57b4a-wkpxt] [578_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec