File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/5e724c4ce29205c6735b6d2169f441/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-202p47zy because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:42,170 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:42,979 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:43,156 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:44,103 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:44,290 - cnv_pipe.batch.run_model - INFO - Processing cluster 991 with 184 probes
2026-05-27 18:54:44,662 - cnv_pipe.batch.run_model.cluster991 - INFO - Child process started for cluster 991 with 184 probes
2026-05-27 18:55:40,431 - cnv_pipe.batch.run_model.cluster991 - INFO - Child process finished cluster 991. Wrote cluster_991_samples.csv and cluster_991_params.csv
2026-05-27 18:55:40,433 - cnv_pipe.batch.run_model - INFO - Cluster 991 finished in 56.14 seconds. Status: SUCCESS