Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/ca8c83caf970653638015782a06c0c/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/ca8c83caf970653638015782a06c0c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/8cec261d5efbf269078e42e83159b5/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/8cec261d5efbf269078e42e83159b5/Sig_18_Blood.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T18:50:09.718608Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:09.722989Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:09.723001Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:09.723006Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:09.723010Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXHbFTKb'
[2026-05-27T18:50:09.723014Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:09.723018Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:09.723022Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:09.723026Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:09.723029Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:09.723033Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:09.723036Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:09.723040Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:09.723044Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:09.723757Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:09.723869Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:09.729506Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:09.730151Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:09.730365Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:09.730514Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:09.730760Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731024Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731110Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731201Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731325Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731390Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731505Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731567Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731682Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.731746Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.732208Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.732326Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.732531Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.732962Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.734721Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.734940Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.735061Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:09.735202Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.735346Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.735578Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736029Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736093Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736204Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736271Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736377Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736438Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736551Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736612Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736723Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736787Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.736900Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.737068Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.737345Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.737697Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.737813Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.737877Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.737986Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.738048Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.738154Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.738214Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.738324Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.738408Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.738525Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.738590Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.739400Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.739761Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.739883Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.739949Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740124Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740192Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740298Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740363Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740470Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740534Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740643Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740703Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.740969Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.741387Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.741502Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.741565Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.741677Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.741737Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.741849Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.741917Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.742022Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.742254Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.742387Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.742544Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.759569Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.759668Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.759744Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.759898Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.759966Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.760051Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.760118Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.761270Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.761364Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.761416Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:09.763159Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.763910Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.764228Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.764778Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.765409Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.765885Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.766931Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.767959Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.769805Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.770323Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T18:50:09.775598Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:09.780914Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T18:50:09.783217Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:09.784062Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T18:50:09.786169Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T18:50:09.786399Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T18:50:09.787140Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T18:50:09.885630Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.886476Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.889523Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T18:50:10.401980Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.402893Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.405683Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:10.466996Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.467746Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.470418Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:10.732722Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.733772Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.736659Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T18:50:10.765766Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.766490Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.768885Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T18:50:11.282272Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.283132Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.285874Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:11.397550Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.398385Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.400945Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:11.430321Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.431104Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.433519Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:11.595711Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.595799Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.596520Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.596815Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.599754Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:11.600847Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:11.630571Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.631306Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.634304Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:11.647221Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.647909Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.650223Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T18:50:11.679816Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.680534Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.683127Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:11.688194Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.688829Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.691236Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:11.720729Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.721438Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.723953Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T18:50:11.737409Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.738086Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.740506Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T18:50:11.770015Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.770708Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.772973Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T18:50:11.802669Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.803378Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.805862Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T18:50:11.811122Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.811754Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.814038Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T18:50:11.975937Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.976630Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.979488Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T18:50:12.008854Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.009541Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.012450Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:12.041876Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.041961Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.042594Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.042817Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.045534Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:12.046287Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:12.107601Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.107685Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.108293Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.108643Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.111866Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:12.112628Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T18:50:12.173191Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.173861Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.176808Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:12.205914Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.206576Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.209258Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T18:50:12.238454Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.239057Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.241709Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T18:50:12.603810Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.604391Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.607254Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T18:50:12.636284Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.636895Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.639544Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:13.102462Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.103162Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.106061Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T18:50:13.135217Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.135833Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.138374Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T18:50:13.249958Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.250642Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.253451Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:13.282749Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.283344Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.286018Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T18:50:13.315484Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.316045Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.318568Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T18:50:13.430282Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.430386Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.430973Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.431340Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.433932Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T18:50:13.434800Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T18:50:13.464001Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.464083Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.464601Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.464936Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.467889Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:13.468698Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:13.529331Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.529421Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.529928Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.530312Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.532808Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:13.533795Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:13.562069Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.562589Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.564270Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.564891Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.565303Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T18:50:13.567411Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T18:50:13.596730Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.597316Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.599852Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T18:50:13.711567Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.712162Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.715098Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T18:50:13.744178Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.744689Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.747276Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T18:50:13.858856Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.859412Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.862290Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T18:50:13.891469Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.891584Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.892046Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.892355Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.895490Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:13.896342Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:13.908458Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.908947Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.911602Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T18:50:13.924794Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.925262Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.927774Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T18:50:13.940963Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.941419Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.943684Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T18:50:13.945921Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.946379Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.948634Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T18:50:13.963363Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.963846Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.966070Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T18:50:13.979711Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.981176Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.997015Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.211457Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.211910Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.215035Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:14.275993Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.041725Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.042165Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.044773Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T18:50:15.073996Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.105812Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.106190Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.108452Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T18:50:15.138033Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.138099Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.138489Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.140799Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:15.170553Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.234570Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.234939Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.237246Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T18:50:15.267288Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.267537Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.267661Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.267885Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.268339Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.272741Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:15.273064Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:15.273593Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:15.301224Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.301282Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.301303Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.301477Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.301711Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.304297Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:15.304921Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:15.333559Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.333641Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.333830Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.336250Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:15.365739Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:20.292122Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:28.611375Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:28.611375Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] 
[2026-05-27T18:50:28.611375Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:28.611437Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] 
[2026-05-27T18:50:28.611446Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:28.611453Z] [nf-daca8c83caf970653638015782a06c0c-b34d6-bngkv] [579_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec