File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/1fef6b0823660d05ac78c49c9c77cc/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-27T18:50:08.255823Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:08.256580Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:08.256606Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:08.256611Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:08.256616Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXOsrp44'
[2026-05-27T18:50:08.256620Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:08.256625Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:08.256628Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:08.256632Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] [RunParameters] memMb: 386708
[2026-05-27T18:50:08.256636Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:08.256640Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:08.256643Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:08.256647Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:08.256650Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:08.257542Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:08.257607Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:08.263568Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:08.264392Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:08.264594Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:08.265260Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:08.265666Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.266027Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.266126Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.266199Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.266324Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.266393Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.266513Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.266670Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.267218Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.267440Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.267634Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.268076Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.268572Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.270147Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.270307Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:08.270456Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.270974Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.271147Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.271393Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.271630Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.271833Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.271902Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272017Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272082Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272190Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272252Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272365Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272431Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272538Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272603Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.272845Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.273123Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.273513Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.273767Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.273879Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.273946Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.274055Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.274117Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.274230Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.274290Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.274398Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.274458Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.274596Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.274662Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.275354Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.275691Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.275803Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.275927Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276040Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276104Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276209Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276272Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276386Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276445Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276552Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276615Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.276741Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.277219Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.277521Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.277586Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.277694Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.277753Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.277862Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.277924Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.278029Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.278114Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.278255Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.278772Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.293831Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.294341Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.294410Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.294572Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.294640Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.294726Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.295946Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.296935Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.297131Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.297909Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.298006Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.298215Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:08.298488Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.299219Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.299872Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.300438Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.300979Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.302138Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.304080Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.309658Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:08.313097Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T18:50:08.315987Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T18:50:08.316151Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:08.318443Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:08.320664Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T18:50:08.323532Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:08.324583Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:08.388212Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.388281Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.389120Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.389427Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.392921Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:08.393558Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T18:50:08.393629Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.394338Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.396920Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T18:50:08.959784Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.960557Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.963733Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T18:50:09.225528Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.226457Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.229512Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:09.991916Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.992692Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.995559Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T18:50:10.024537Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.024606Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.025278Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.026853Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.027676Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:10.030032Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:10.058960Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.059737Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.062357Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T18:50:10.124054Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.125081Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.127966Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:10.189127Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.189881Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.192843Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T18:50:10.354650Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.355425Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.357838Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:10.419560Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.419652Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.420319Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.420808Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.423504Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:10.424410Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T18:50:10.454900Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.455568Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.458293Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T18:50:10.459441Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.460014Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.462288Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T18:50:10.492807Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.493482Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.496083Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T18:50:10.501428Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.502047Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.504991Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T18:50:10.534526Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.534605Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.535193Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.535835Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.538582Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:10.539605Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:10.601371Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.601446Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.602044Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.602716Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.605706Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T18:50:10.606221Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T18:50:10.918218Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.918327Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.919004Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.919616Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.923097Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T18:50:10.924275Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:10.952053Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.952699Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.955155Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T18:50:10.984787Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.985421Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.988191Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:11.400532Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.401157Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.403839Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T18:50:11.515314Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.516014Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.518575Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T18:50:11.547943Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.548557Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.550884Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T18:50:11.580343Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.580995Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.583563Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T18:50:11.795194Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.795861Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.798354Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T18:50:11.828913Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.829523Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.832308Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:11.845874Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.846436Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.848816Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:11.910610Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.911155Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.913842Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:11.975380Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.975943Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.978677Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:12.008296Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.008865Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.011328Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T18:50:12.123043Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.123145Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.123178Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.123739Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.124406Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.127165Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.127624Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:12.128203Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T18:50:12.130397Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:12.159911Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.159991Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.160484Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.161009Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.163996Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T18:50:12.164947Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T18:50:12.275709Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.276301Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.278832Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T18:50:12.308590Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.309157Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.311782Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:12.341587Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.342120Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.344652Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T18:50:12.374201Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.374738Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.377216Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T18:50:12.407058Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.407595Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.410115Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T18:50:12.621939Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.622511Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.625157Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:12.686762Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.687324Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.689648Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:12.720420Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.720943Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.723524Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:12.753044Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.753519Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.755793Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T18:50:12.785565Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.786073Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.788563Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T18:50:12.850418Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.850918Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.853375Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T18:50:12.883745Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.915697Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.916148Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.918747Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T18:50:12.948301Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.263061Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.263603Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.266181Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T18:50:13.295560Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.509917Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.510387Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.512841Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T18:50:13.543516Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.575563Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.575982Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.578467Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:13.608197Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.822692Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.823184Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.825672Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T18:50:13.855540Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.069995Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.070452Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.072592Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T18:50:14.103463Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.318002Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.318420Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.320810Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T18:50:14.350294Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.350526Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.350644Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.351228Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.352233Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.354591Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.356441Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:14.356919Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:14.385474Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.385545Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.385569Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.385753Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.387125Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.388255Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.389086Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:14.419076Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.419140Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.419313Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.421369Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:14.451856Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:18.875045Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:27.145159Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:27.145159Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] 
[2026-05-27T18:50:27.145159Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:27.145221Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] 
[2026-05-27T18:50:27.145228Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:27.145235Z] [nf-951fef6b0823660d05ac78c49c9c77cc-37826-h8qkl] [580_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec