File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/592ce8e5d486215379fe2c14150ebd/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-27T18:50:09.597414Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:09.604404Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:09.604435Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:09.604442Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:09.604446Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXPkcRvC'
[2026-05-27T18:50:09.604450Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:09.604461Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:09.604464Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:09.604468Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:09.604472Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:09.604478Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:09.604482Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:09.604486Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:09.604491Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:09.605283Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:09.605390Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:09.611088Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:09.611847Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:09.612329Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:09.612836Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:09.613101Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.613399Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.613493Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.613564Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.613681Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.613747Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.613867Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.613931Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.614047Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.614110Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.614269Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.614460Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.614832Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.615063Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.615197Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.615395Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.615513Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.616000Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.616520Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.618388Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:09.618624Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.618980Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619149Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619226Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619347Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619411Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619532Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619599Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619713Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619780Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.619962Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.620336Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.620470Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.620541Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.620654Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.620749Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.620863Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.620929Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.621038Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.621098Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.621213Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.621275Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.621638Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.621948Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.622409Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.622471Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.622586Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.622652Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.622823Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.622889Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.623127Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.623519Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.623630Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.623692Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.623802Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.623864Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.623977Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.624042Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.624153Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.624237Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.624355Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.624419Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.624613Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.625061Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.625172Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.625240Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.625348Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.625410Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.640852Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.641304Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.641379Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.641556Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.641624Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.641710Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.641779Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.643237Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.644133Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:09.644280Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.644449Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:09.645163Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.645627Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.646452Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.648919Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.649266Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:09.650147Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.650782Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.651906Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.654936Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:09.655735Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:09.655928Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.659828Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:09.662598Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:09.665404Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:09.667409Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T18:50:09.669723Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:09.733074Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.733139Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.733775Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.734109Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.738591Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T18:50:10.249609Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.250498Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.253540Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T18:50:10.415170Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.415978Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.419183Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T18:50:10.480073Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.480894Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.483752Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T18:50:10.645337Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.646130Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.649092Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T18:50:10.910681Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.911436Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.914281Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T18:50:10.975632Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.976397Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.978983Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T18:50:11.008516Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.009216Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.011920Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:11.073196Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.073913Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.076638Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T18:50:11.137920Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.138651Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.141370Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:11.170529Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.171214Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.173805Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:11.435687Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.435785Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.436504Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.436802Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.439386Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:11.440847Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:11.486953Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T18:50:11.501065Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.501151Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.501182Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.501796Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.502416Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.504108Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.505782Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T18:50:11.506511Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:11.508315Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T18:50:11.537815Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.537891Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.538483Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.538842Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.541296Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T18:50:11.571431Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:11.603341Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.603412Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.603999Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.604407Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.607105Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:11.608211Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T18:50:11.636543Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.637150Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.639504Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:11.751366Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.752016Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.755038Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T18:50:11.866360Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.867051Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.869971Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T18:50:12.131558Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.132305Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.135295Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T18:50:12.397335Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.397980Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.400976Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:12.512125Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.512836Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.515809Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:12.544914Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.545546Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.548109Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:12.577504Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.578121Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.581392Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T18:50:12.943111Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.943217Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.943806Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.945552Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.947573Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:12.948618Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:12.977803Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.978644Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.978894Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.980827Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.982180Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T18:50:12.983381Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T18:50:13.013273Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.013353Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.013859Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.014097Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.016922Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T18:50:13.018056Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T18:50:13.046590Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.047170Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.050560Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T18:50:13.079178Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.080348Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.080637Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.081609Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.084294Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T18:50:13.085120Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T18:50:13.114360Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.114913Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.117612Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:13.178939Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.179525Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.182117Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:13.211365Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.211902Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.214463Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T18:50:13.243828Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.244360Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.246865Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T18:50:13.276517Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.277061Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.280379Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T18:50:13.341238Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.341318Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.341818Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.342103Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.344667Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T18:50:13.345900Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T18:50:13.374104Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.374176Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.374628Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.374928Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.377608Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T18:50:13.378445Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T18:50:13.406732Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.407223Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.409833Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T18:50:13.439062Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.439557Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.442225Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:13.503578Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.504093Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.506645Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:13.535980Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.536510Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.539029Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:13.540198Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.540604Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.543207Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T18:50:13.572693Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.837429Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.837941Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.840649Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T18:50:13.869972Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.284989Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.285476Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.288052Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T18:50:14.317489Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.481706Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.482119Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.484787Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T18:50:14.514138Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.546088Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.546498Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.548973Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T18:50:14.578253Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.642209Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.642573Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.645133Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T18:50:14.674548Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.838690Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.839062Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.841156Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T18:50:14.871759Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.487143Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.487522Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.490265Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T18:50:15.519728Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.520019Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.520153Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.520434Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.521140Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.524334Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:15.525604Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:15.526417Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:15.553766Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.553832Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.553861Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.554054Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.554346Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.556835Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:15.582179Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:15.586572Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.586633Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.586798Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:15.589059Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:15.618704Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:20.192324Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:28.493064Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:28.493064Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] 
[2026-05-27T18:50:28.493064Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:28.493122Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] 
[2026-05-27T18:50:28.493129Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:28.493136Z] [nf-a1592ce8e5d486215379fe2c14150ebd-156c5-495cc] [626_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec