Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/3300bc457771f74b01342f0d89c948/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/2a82d5e4a55c9032015ef17a646c2d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/2a82d5e4a55c9032015ef17a646c2d/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-p8jrsbwa because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:24,559 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:25,434 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:25,614 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:26,598 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:26,797 - cnv_pipe.batch.run_model - INFO - Processing cluster 886 with 190 probes
2026-05-27 18:54:27,185 - cnv_pipe.batch.run_model.cluster886 - INFO - Child process started for cluster 886 with 190 probes
2026-05-27 18:55:24,458 - cnv_pipe.batch.run_model.cluster886 - INFO - Child process finished cluster 886. Wrote cluster_886_samples.csv and cluster_886_params.csv
2026-05-27 18:55:24,459 - cnv_pipe.batch.run_model - INFO - Cluster 886 finished in 57.66 seconds. Status: SUCCESS