Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/92fdbfe39550cff5bfdacb0e6eb01b/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/cfd89d7bf6135f3fef843c121f75ca/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/cfd89d7bf6135f3fef843c121f75ca/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/92fdbfe39550cff5bfdacb0e6eb01b/germline_control_1.haplotyper.unfiltered.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/12c1c7596bd25e15e4234479db7299/germline_control_1.forcecall.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/12c1c7596bd25e15e4234479db7299/germline_control_1.forcecall.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
Writing to /tmp/bcftools.sDjqJr
Merging 1 temporary files
Done
Cleaning