File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/a827040ef5a787d90f1100ffae7e6d/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-933b4kqt because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:33,334 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:35,087 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:35,474 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:37,617 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:37,953 - cnv_pipe.batch.run_model - INFO - Processing cluster 904 with 175 probes
2026-05-27 18:54:38,788 - cnv_pipe.batch.run_model.cluster904 - INFO - Child process started for cluster 904 with 175 probes
2026-05-27 18:56:04,590 - cnv_pipe.batch.run_model.cluster904 - INFO - Child process finished cluster 904. Wrote cluster_904_samples.csv and cluster_904_params.csv
2026-05-27 18:56:04,592 - cnv_pipe.batch.run_model - INFO - Cluster 904 finished in 86.64 seconds. Status: SUCCESS