cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:38000001, elapsed 0.1s, est remaining 1.0s, peak mem 418MB, user 0.2s, sys 2.5s, output queue size 120
progress 10% @chr2:116000001, elapsed 0.1s, est remaining 0.8s, peak mem 418MB, user 0.4s, sys 8.1s, output queue size 269
progress 15% @chr3:9000001, elapsed 0.1s, est remaining 0.7s, peak mem 418MB, user 0.7s, sys 13.4s, output queue size 431
progress 20% @chr3:149000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 1.1s, sys 18.2s, output queue size 554
progress 25% @chr5:36000001, elapsed 0.2s, est remaining 0.6s, peak mem 418MB, user 1.4s, sys 23.1s, output queue size 688
progress 30% @chr5:82000001, elapsed 0.2s, est remaining 0.5s, peak mem 418MB, user 1.8s, sys 27.7s, output queue size 850
progress 35% @chr6:165000001, elapsed 0.3s, est remaining 0.5s, peak mem 418MB, user 2.2s, sys 32.4s, output queue size 1010
progress 40% @chr7:45000001, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 2.7s, sys 37.1s, output queue size 1125
progress 45% @chr7:68000001, elapsed 0.3s, est remaining 0.4s, peak mem 418MB, user 3.1s, sys 41.6s, output queue size 1287
progress 50% @chr10:35000001, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 3.4s, sys 46.4s, output queue size 1448
progress 55% @chr9:38000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 3.7s, sys 51.3s, output queue size 1538
progress 60% @chr12:53000001, elapsed 0.4s, est remaining 0.3s, peak mem 418MB, user 4.1s, sys 55.7s, output queue size 1700
progress 65% @chr12:13000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 4.4s, sys 60.1s, output queue size 543
progress 70% @chr14:14000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 4.8s, sys 64.6s, output queue size 705
progress 75% @chr15:47000001, elapsed 0.5s, est remaining 0.2s, peak mem 418MB, user 5.4s, sys 69.2s, output queue size 867
progress 80% @chr19:25000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 5.7s, sys 73.7s, output queue size 1029
progress 85% @chr20:31000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 6.1s, sys 78.4s, output queue size 1191
progress 90% @chrX:133000001, elapsed 0.6s, est remaining 0.1s, peak mem 418MB, user 6.5s, sys 82.6s, output queue size 1353
progress 95% @chr1_KI270759v1_alt:1, elapsed 0.6s, est remaining 0.0s, peak mem 418MB, user 6.9s, sys 87.1s, output queue size 1726
progress 100% @HLA-DRB1*12:17:1, elapsed 0.7s, est remaining 0.0s, peak mem 420MB, user 7.6s, sys 98.0s, output queue size 4938
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 46614
output file size: 40480
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.000 user 0.000 sys 0.008 real
"predict_filter": 136 calls 0.008 user 0.011 sys 0.098 real
advance: 3219322 calls 0.585 user 39.453 sys 50.543 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.002 sys 0.798 real
fetch_ref: 384 calls 0.001 user 0.065 sys 0.557 real
idle: 20057 calls 0.672 user 0.722 sys 373.679 real
init: 1 calls 0.214 user 0.070 sys 0.909 real
overall: 440684544 mem 9.014 user 101.561 sys 2.811 real