cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_tissue.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_tissue.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.7s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 3775
progress 10% @chr2:20005744, elapsed 0.1s, est remaining 0.7s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 2645
progress 15% @chr2:189053895, elapsed 0.1s, est remaining 0.7s, peak mem 181MB, user 0.0s, sys 0.0s, output queue size 13027
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.6s, peak mem 190MB, user 0.0s, sys 0.0s, output queue size 23513
progress 25% @chr4:88383221, elapsed 0.2s, est remaining 0.6s, peak mem 193MB, user 0.0s, sys 0.0s, output queue size 541
progress 30% @chr5:147412608, elapsed 0.2s, est remaining 0.6s, peak mem 211MB, user 0.0s, sys 0.0s, output queue size 10590
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.5s, peak mem 211MB, user 0.0s, sys 0.0s, output queue size 20543
progress 40% @chr7:128838267, elapsed 0.3s, est remaining 0.5s, peak mem 220MB, user 0.0s, sys 0.0s, output queue size 30026
progress 45% @chr9:2039466, elapsed 0.3s, est remaining 0.4s, peak mem 352MB, user 0.0s, sys 0.0s, output queue size 39391
progress 50% @chr10:32451643, elapsed 0.4s, est remaining 0.4s, peak mem 418MB, user 0.0s, sys 0.1s, output queue size 49325
progress 55% @chr11:48306223, elapsed 0.4s, est remaining 0.4s, peak mem 445MB, user 0.0s, sys 0.1s, output queue size 59789
progress 60% @chr12:21915668, elapsed 0.5s, est remaining 0.3s, peak mem 448MB, user 0.0s, sys 0.1s, output queue size 69371
progress 65% @chr13:48515586, elapsed 0.5s, est remaining 0.3s, peak mem 468MB, user 0.0s, sys 0.1s, output queue size 80401
progress 70% @chr15:42684116, elapsed 0.6s, est remaining 0.2s, peak mem 481MB, user 0.0s, sys 0.1s, output queue size 90421
progress 75% @chr16:30953185, elapsed 0.6s, est remaining 0.2s, peak mem 483MB, user 0.0s, sys 0.1s, output queue size 99987
progress 80% @chr17:42329347, elapsed 0.7s, est remaining 0.2s, peak mem 496MB, user 0.0s, sys 0.1s, output queue size 6159
progress 85% @chr19:5648989, elapsed 0.7s, est remaining 0.1s, peak mem 496MB, user 0.0s, sys 0.1s, output queue size 16562
progress 90% @chr19:55723980, elapsed 0.7s, est remaining 0.1s, peak mem 505MB, user 0.0s, sys 0.1s, output queue size 26063
progress 95% @chr22:37024192, elapsed 1.2s, est remaining 0.1s, peak mem 2517MB, user 9.7s, sys 2.0s, output queue size 3249
progress 100% @chr6_GL000251v2_alt:3939000, elapsed 1.2s, est remaining 0.0s, peak mem 2517MB, user 9.9s, sys 2.0s, output queue size 7097
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50047734
reads: 1001838
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2.359 user 0.085 sys 2.629 real
done: 1 calls 0.297 user 0.149 sys 0.449 real
execute: 1 calls 0.005 user 0.002 sys 1.253 real
fetch_reads: 208647 calls 0.095 user 0.002 sys 0.196 real
fetch_ref: 2079 calls 0.036 user 0.008 sys 0.018 real
fetch_vcf: 2079 calls 0.950 user 0.032 sys 1.177 real
idle: 92 calls 0.002 user 0.000 sys 31.872 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2294 calls 7.690 user 1.880 sys 10.391 real
overall: 2639679488 mem 14.389 user 5.940 sys 2.704 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory