File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/77ea0842022829924c64c5683352b3/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-967vye0g because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:31,426 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:32,237 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:32,408 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:33,342 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:33,517 - cnv_pipe.batch.run_model - INFO - Processing cluster 928 with 184 probes
2026-05-27 18:54:33,900 - cnv_pipe.batch.run_model.cluster928 - INFO - Child process started for cluster 928 with 184 probes
2026-05-27 18:55:28,169 - cnv_pipe.batch.run_model.cluster928 - INFO - Child process finished cluster 928. Wrote cluster_928_samples.csv and cluster_928_params.csv
2026-05-27 18:55:28,170 - cnv_pipe.batch.run_model - INFO - Cluster 928 finished in 54.65 seconds. Status: SUCCESS