Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/3300bc457771f74b01342f0d89c948/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/20980a8b72434b119805e31e18f186/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ad33867fae3e2bfdc5f0346f169353/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ad33867fae3e2bfdc5f0346f169353/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-fswh1sti because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 18:54:24,239 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 18:54:25,066 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 18:54:25,238 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 18:54:26,207 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 18:54:26,400 - cnv_pipe.batch.run_model - INFO - Processing cluster 882 with 195 probes
2026-05-27 18:54:26,792 - cnv_pipe.batch.run_model.cluster882 - INFO - Child process started for cluster 882 with 195 probes
2026-05-27 18:55:25,649 - cnv_pipe.batch.run_model.cluster882 - INFO - Child process finished cluster 882. Wrote cluster_882_samples.csv and cluster_882_params.csv
2026-05-27 18:55:25,651 - cnv_pipe.batch.run_model - INFO - Cluster 882 finished in 59.25 seconds. Status: SUCCESS