cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:79000001, elapsed 0.0s, est remaining 0.9s, peak mem 420MB, user 0.1s, sys 1.6s, output queue size 101
progress 10% @chr1:158000001, elapsed 0.1s, est remaining 0.8s, peak mem 420MB, user 0.4s, sys 6.9s, output queue size 204
progress 15% @chr3:5000001, elapsed 0.1s, est remaining 0.7s, peak mem 420MB, user 0.9s, sys 14.7s, output queue size 333
progress 20% @chr3:148000001, elapsed 0.2s, est remaining 0.6s, peak mem 420MB, user 1.4s, sys 20.5s, output queue size 495
progress 25% @chr4:132000001, elapsed 0.2s, est remaining 0.6s, peak mem 420MB, user 1.9s, sys 25.9s, output queue size 112
progress 30% @chr5:176000001, elapsed 0.2s, est remaining 0.5s, peak mem 420MB, user 2.3s, sys 31.7s, output queue size 274
progress 35% @chr6:95000001, elapsed 0.3s, est remaining 0.5s, peak mem 420MB, user 2.8s, sys 36.8s, output queue size 434
progress 40% @chr7:69000001, elapsed 0.3s, est remaining 0.4s, peak mem 420MB, user 3.3s, sys 42.4s, output queue size 596
progress 45% @chr8:92000001, elapsed 0.3s, est remaining 0.4s, peak mem 420MB, user 3.6s, sys 48.0s, output queue size 758
progress 50% @chr9:62000001, elapsed 0.4s, est remaining 0.4s, peak mem 420MB, user 4.1s, sys 53.7s, output queue size 919
progress 55% @chr11:62000001, elapsed 0.4s, est remaining 0.3s, peak mem 420MB, user 4.7s, sys 58.6s, output queue size 1080
progress 60% @chr10:117000001, elapsed 0.4s, est remaining 0.3s, peak mem 420MB, user 5.1s, sys 63.8s, output queue size 1242
progress 65% @chr13:26000001, elapsed 0.5s, est remaining 0.2s, peak mem 420MB, user 5.6s, sys 69.2s, output queue size 1404
progress 70% @chr15:10000001, elapsed 0.5s, est remaining 0.2s, peak mem 420MB, user 6.1s, sys 74.4s, output queue size 1566
progress 75% @chr15:13000001, elapsed 0.5s, est remaining 0.2s, peak mem 420MB, user 6.4s, sys 79.4s, output queue size 1728
progress 80% @chr17:78000001, elapsed 0.5s, est remaining 0.1s, peak mem 420MB, user 7.0s, sys 84.8s, output queue size 1890
progress 85% @chr20:48000001, elapsed 0.6s, est remaining 0.1s, peak mem 420MB, user 7.5s, sys 89.6s, output queue size 2051
progress 90% @chrX:48000001, elapsed 0.6s, est remaining 0.1s, peak mem 420MB, user 7.9s, sys 94.1s, output queue size 2214
progress 95% @chrY:27000001, elapsed 0.6s, est remaining 0.0s, peak mem 420MB, user 8.3s, sys 99.4s, output queue size 2537
progress 100% @HLA-DQB1*06:01:01:1, elapsed 0.7s, est remaining 0.0s, peak mem 420MB, user 8.5s, sys 112.2s, output queue size 3120
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: bfebfbff 7ffefbff
extended: f3bfb7ef fb417ffe
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 51110
output file size: 43423
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.009 real
"predict_filter": 171 calls 0.010 user 0.007 sys 0.024 real
advance: 3219322 calls 0.544 user 42.995 sys 51.322 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.002 sys 0.766 real
fetch_ref: 460 calls 0.000 user 0.006 sys 0.013 real
idle: 18683 calls 0.744 user 0.637 sys 506.461 real
init: 1 calls 0.205 user 0.043 sys 1.673 real
overall: 440680448 mem 9.981 user 116.851 sys 3.564 real