File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/a61f6368d2ab64933862f7ebc3a558/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-05-27T18:50:02.362381Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:02.369470Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:02.369486Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:02.369492Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:02.369498Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX0AxrIG'
[2026-05-27T18:50:02.369503Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:02.369509Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:02.369518Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:02.369523Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] [RunParameters] memMb: 1523801
[2026-05-27T18:50:02.369528Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:02.369533Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:02.369538Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:02.369545Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:02.369550Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:02.369897Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:02.369994Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:02.376821Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:02.377423Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:02.377635Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:02.377832Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:02.378073Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.378870Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.378982Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.379074Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.379385Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.379674Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.379762Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.380352Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.380591Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.380798Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.380958Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.382682Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.382865Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.382958Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:02.383166Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.383275Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.383420Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.383500Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.383637Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.383713Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.384125Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.384347Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.384491Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.384576Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.384715Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.384793Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.384939Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.385018Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.385153Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.385234Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.385617Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.385924Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.386278Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.386554Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.386691Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.386771Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.386908Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.386986Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.387123Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.387212Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.387358Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.387434Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.387685Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.388089Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.388227Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.388308Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.388452Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.388531Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.388739Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.388819Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.388955Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.389034Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.389317Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.389837Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.389978Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390054Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390190Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390269Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390401Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390476Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390614Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390691Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390832Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.390961Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.391647Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.391737Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.391873Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.391949Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.392083Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.392164Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.392299Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.392378Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.392510Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.392587Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.412012Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.412229Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.412398Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.412682Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.413473Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.413594Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.413878Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.414069Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.414267Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.414518Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.415035Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.415211Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.415506Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.416135Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.416774Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.417011Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.417432Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:02.418071Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:02.418477Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.423081Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T18:50:02.425098Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T18:50:02.427568Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:02.429923Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:02.434939Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:02.437159Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T18:50:02.439777Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:02.440985Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:02.503132Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.503183Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.503971Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.504267Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.508402Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T18:50:02.509088Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T18:50:02.568870Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.569728Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:02.572625Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T18:50:03.434731Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.435685Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.438927Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T18:50:03.550194Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.551244Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.554029Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T18:50:03.583301Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.584302Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.587360Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T18:50:03.798536Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.799447Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.802217Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:03.831238Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.831984Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.835230Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:03.863907Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.864642Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.867394Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T18:50:03.880326Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.881088Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.883555Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T18:50:03.896648Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.896697Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.897394Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.897719Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.901094Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T18:50:03.901762Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T18:50:03.914137Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.914887Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.917504Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:03.946701Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.947420Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.949712Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T18:50:03.979024Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.979746Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.982807Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T18:50:03.987557Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.988284Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:03.990839Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T18:50:04.302408Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.303210Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.305541Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T18:50:04.366928Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.367626Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.369841Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T18:50:04.399243Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.399964Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.401744Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.402659Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T18:50:04.402754Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.404901Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T18:50:04.434416Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.434470Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.435217Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.435489Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.438677Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T18:50:04.599701Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.600498Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.603693Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T18:50:04.664733Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.665503Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.668440Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T18:50:04.729503Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.730265Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:04.733221Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T18:50:05.345059Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.345838Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.349774Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T18:50:05.661004Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.661801Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:05.664933Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T18:50:05.996745Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T18:50:06.026415Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.026504Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.027285Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.027587Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.031044Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T18:50:06.031864Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T18:50:06.059886Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.060602Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.063641Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T18:50:06.124446Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.125110Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.128149Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T18:50:06.339514Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.340291Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.343408Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T18:50:06.404390Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.404482Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.405275Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.405593Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.410078Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T18:50:06.410611Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:06.470743Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.471554Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.474453Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T18:50:06.503483Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.504185Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.506918Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T18:50:06.918692Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.919559Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.922476Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T18:50:06.951588Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.952345Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:06.955243Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:07.016462Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.017136Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.019952Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T18:50:07.024881Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.025512Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.027976Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T18:50:07.057333Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.058013Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.060643Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:07.061637Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.062239Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.064751Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T18:50:07.094042Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.094683Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.097191Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T18:50:07.126479Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.126537Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.126566Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.127144Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.127426Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.127745Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.131867Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T18:50:07.133495Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T18:50:07.134702Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T18:50:07.160597Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.160665Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.161214Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.161518Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.164542Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T18:50:07.165312Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T18:50:07.225623Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.225688Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.226235Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.226544Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.229912Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T18:50:07.230543Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T18:50:07.242555Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.243143Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.245862Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T18:50:07.274823Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.274875Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.275380Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.275633Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.276222Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.279805Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T18:50:07.280385Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.280749Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T18:50:07.283829Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T18:50:07.312627Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.313188Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.315748Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:07.316820Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.316876Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.317360Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.317549Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.320335Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T18:50:07.321322Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T18:50:07.381660Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.381711Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.381736Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.382176Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.382488Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:07.385575Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T18:50:07.386721Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:07.446477Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.161463Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.161968Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.164096Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.164768Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.165194Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T18:50:08.167502Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T18:50:08.196669Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.196729Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.310601Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.310640Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.311049Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.311317Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.313888Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T18:50:08.314569Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T18:50:08.343058Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.343095Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.456943Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.457360Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.460103Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T18:50:08.489126Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.953535Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.954002Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.956891Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T18:50:08.986105Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.986393Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.986547Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.986830Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.987302Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.992163Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:08.993618Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:09.019276Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.019531Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.019888Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:09.021709Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.021808Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.022108Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.022404Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:09.024643Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:09.054023Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.054073Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.054286Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.056572Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:09.086045Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:13.005252Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:21.257166Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:21.257166Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] 
[2026-05-27T18:50:21.257166Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:21.257212Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] 
[2026-05-27T18:50:21.257224Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:21.257232Z] [nf-eea61f6368d2ab64933862f7ebc3a558-b44fc-rtbkq] [777_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec