cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144250212, elapsed 0.0s, est remaining 0.8s, peak mem 81MB, user 0.0s, sys 0.1s, output queue size 2281
progress 10% @chr9:36833270, elapsed 0.1s, est remaining 0.7s, peak mem 90MB, user 0.1s, sys 0.3s, output queue size 4495
progress 15% @chr9:96758778, elapsed 0.1s, est remaining 0.7s, peak mem 97MB, user 0.1s, sys 0.4s, output queue size 1914
progress 20% @chr9:128940599, elapsed 0.2s, est remaining 0.6s, peak mem 109MB, user 0.1s, sys 0.6s, output queue size 4531
progress 25% @chr10:14908408, elapsed 0.2s, est remaining 0.6s, peak mem 115MB, user 0.2s, sys 0.7s, output queue size 7284
progress 30% @chr10:69186443, elapsed 0.2s, est remaining 0.6s, peak mem 129MB, user 0.2s, sys 0.8s, output queue size 9671
progress 35% @chr10:100498029, elapsed 0.3s, est remaining 0.5s, peak mem 135MB, user 0.3s, sys 1.0s, output queue size 12328
progress 40% @chr11:308193, elapsed 0.3s, est remaining 0.5s, peak mem 148MB, user 0.3s, sys 1.2s, output queue size 14907
progress 45% @chr11:17788085, elapsed 0.4s, est remaining 0.5s, peak mem 153MB, user 0.3s, sys 1.4s, output queue size 17064
progress 50% @chr11:61421390, elapsed 0.5s, est remaining 0.5s, peak mem 160MB, user 0.4s, sys 1.5s, output queue size 19432
progress 55% @chr11:73015809, elapsed 0.6s, est remaining 0.5s, peak mem 171MB, user 0.4s, sys 1.7s, output queue size 22100
progress 60% @chr11:114444541, elapsed 0.6s, est remaining 0.4s, peak mem 180MB, user 0.4s, sys 1.8s, output queue size 24390
progress 65% @chr12:6492862, elapsed 0.7s, est remaining 0.4s, peak mem 186MB, user 0.4s, sys 2.0s, output queue size 26756
progress 70% @chr12:31697361, elapsed 0.7s, est remaining 0.3s, peak mem 193MB, user 0.5s, sys 2.1s, output queue size 28843
progress 75% @chr12:55968049, elapsed 0.8s, est remaining 0.3s, peak mem 205MB, user 0.5s, sys 2.2s, output queue size 31319
progress 80% @chr12:100051079, elapsed 0.8s, est remaining 0.2s, peak mem 217MB, user 0.6s, sys 2.4s, output queue size 34051
progress 85% @chr12:123785746, elapsed 0.9s, est remaining 0.2s, peak mem 229MB, user 0.6s, sys 2.6s, output queue size 36908
progress 90% @chr13:48465203, elapsed 0.9s, est remaining 0.1s, peak mem 237MB, user 0.7s, sys 2.7s, output queue size 39273
progress 95% @chr14:22776195, elapsed 1.0s, est remaining 0.1s, peak mem 246MB, user 0.7s, sys 2.8s, output queue size 41543
progress 100% @chr14:63980654, elapsed 1.0s, est remaining 0.0s, peak mem 261MB, user 0.7s, sys 3.0s, output queue size 44081
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71699821
output file size: 22309
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.000 sys 0.019 real
advance: 50143 calls 0.011 user 0.004 sys 0.022 real
calc: 98785 calls 0.003 user 0.000 sys 0.019 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.007 user 0.002 sys 1.917 real
fetch: 98785 calls 0.000 user 0.002 sys 0.020 real
fetch_ref: 98785 calls 0.074 user 0.029 sys 0.360 real
idle: 39 calls 0.003 user 0.005 sys 23.375 real
init: 1 calls 0.040 user 0.000 sys 0.042 real
region: 98785 calls 0.013 user 0.000 sys 0.023 real
tracker: 98785 calls 0.011 user 0.007 sys 0.093 real
overall: 277073920 mem 1.366 user 5.041 sys 3.039 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory