[2026-05-27T18:50:08.748003Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T18:50:08.748819Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T18:50:08.748831Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T18:50:08.748835Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T18:50:08.748839Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXOrLCkM'
[2026-05-27T18:50:08.748844Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T18:50:08.748849Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T18:50:08.748853Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T18:50:08.748857Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T18:50:08.748861Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T18:50:08.748865Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T18:50:08.748868Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T18:50:08.748872Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T18:50:08.748876Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T18:50:08.749498Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T18:50:08.749658Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T18:50:08.755728Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T18:50:08.756463Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T18:50:08.756706Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T18:50:08.756982Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T18:50:08.757549Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.758749Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.758959Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.759076Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.759513Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.761162Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.761631Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.761768Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T18:50:08.762305Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.762533Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.762845Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.763039Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.763390Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.763545Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.763661Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.763729Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.763839Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.763904Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.764015Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.764080Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.764390Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.764457Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.764747Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.764969Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.765106Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.765169Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.765573Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.765639Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.765756Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.765820Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.765930Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.766049Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.766351Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.766648Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.766770Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.766834Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.766946Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.767011Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.767121Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.767188Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.767298Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.767360Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.767470Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.767533Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.767757Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768147Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768268Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768393Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768510Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768576Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768680Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768745Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768856Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.768915Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.769031Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.769092Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.769454Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.770030Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.770153Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.770220Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.770365Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.770444Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.770565Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.770633Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.787491Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.787839Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.787972Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.788640Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.788871Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.789079Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.789170Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.789512Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.789875Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.790154Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.792123Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.792802Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.793774Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.794380Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.795495Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.796033Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T18:50:08.796729Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.797395Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.797665Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T18:50:08.801783Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T18:50:08.806367Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T18:50:08.808762Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T18:50:08.814562Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T18:50:08.815406Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T18:50:08.819030Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:08.820376Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T18:50:08.931799Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.931887Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.932608Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.932976Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.936295Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T18:50:08.937858Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T18:50:08.955796Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T18:50:08.966933Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.967697Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:08.970186Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T18:50:08.999668Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.000449Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.003342Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T18:50:09.265313Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.266142Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.269105Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T18:50:09.298278Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.299081Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.301855Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T18:50:09.363130Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.363828Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.366740Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T18:50:09.395823Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.396574Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.399413Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T18:50:09.711474Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.712255Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.715298Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T18:50:09.776553Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.777324Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:09.780502Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T18:50:10.041972Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.042739Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.045569Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T18:50:10.075179Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.075899Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.078710Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T18:50:10.290420Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.291288Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.294160Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T18:50:10.355640Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.356384Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.359886Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T18:50:10.571372Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.572095Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.575196Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T18:50:10.604221Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.604889Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.607820Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:10.612592Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.612666Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.613238Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.613454Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.616255Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T18:50:10.617181Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T18:50:10.629564Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.630212Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.633005Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T18:50:10.646045Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.646123Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.646736Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.647025Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.650584Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T18:50:10.651473Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T18:50:10.651579Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.652087Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.654566Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T18:50:10.684071Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.684727Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.687733Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T18:50:10.716783Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.717403Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.720550Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T18:50:10.782203Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.782297Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.782924Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.783208Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.786313Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T18:50:10.791300Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.791916Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.794879Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T18:50:10.836370Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T18:50:10.855954Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.856029Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.856052Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.856618Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.856865Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.857281Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.860851Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T18:50:10.861370Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T18:50:10.893760Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T18:50:10.923300Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.923389Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.923416Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.923446Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.924004Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.924401Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.924627Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.925046Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.928917Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T18:50:10.929453Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T18:50:10.930516Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T18:50:10.932066Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T18:50:10.957751Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.958310Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.961009Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T18:50:10.961955Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.961998Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.962394Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.962667Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.965321Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T18:50:10.966429Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T18:50:10.994757Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.994842Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.995336Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.995613Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:10.998247Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T18:50:10.999223Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T18:50:11.011638Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.012181Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.014811Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T18:50:11.027993Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.028529Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.031279Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T18:50:11.044253Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.044729Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.047531Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T18:50:11.076866Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.077419Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.080094Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T18:50:11.141591Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.142166Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.144810Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T18:50:11.206320Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.206448Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.206973Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.207338Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.210593Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T18:50:11.211349Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.211950Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T18:50:11.212071Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.214763Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T18:50:11.244025Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.244094Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.244495Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.244816Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.247697Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T18:50:11.248917Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T18:50:11.277123Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.277207Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.277231Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.277657Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.280284Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T18:50:11.309566Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.313132Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.313483Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.315916Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T18:50:11.345536Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.460038Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.460516Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.463162Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T18:50:11.492764Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.807676Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.808155Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.810758Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T18:50:11.840034Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.954198Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.954688Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T18:50:11.957263Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T18:50:11.986585Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.151170Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.151648Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.154022Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T18:50:12.183591Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.183825Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.183951Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.184249Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.184661Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.187039Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T18:50:12.189833Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T18:50:12.212229Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T18:50:12.217240Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.217303Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.217325Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.217530Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.217825Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.220268Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T18:50:12.221085Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T18:50:12.250645Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.250713Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.250957Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T18:50:12.253416Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T18:50:12.282959Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T18:50:14.452434Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T18:50:19.285021Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T18:50:19.285021Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] 
[2026-05-27T18:50:19.285021Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T18:50:19.285089Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] 
[2026-05-27T18:50:19.285096Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T18:50:19.285111Z] [nf-314474f2c3ffff2fdfcee1986dd6228c-c4ced-5dm4b] [582_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec