cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.8s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 4602
progress 10% @chr2:19989992, elapsed 0.1s, est remaining 0.7s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 2783
progress 15% @chr2:189010178, elapsed 0.1s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 13180
progress 20% @chr3:97864217, elapsed 0.2s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 23671
progress 25% @chr4:88262595, elapsed 0.2s, est remaining 0.6s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 33914
progress 30% @chr5:146638251, elapsed 0.2s, est remaining 0.5s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 43953
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.5s, peak mem 173MB, user 0.0s, sys 0.0s, output queue size 53908
progress 40% @chr7:128794348, elapsed 0.3s, est remaining 0.4s, peak mem 178MB, user 0.0s, sys 0.0s, output queue size 9277
progress 45% @chr9:990041, elapsed 0.3s, est remaining 0.4s, peak mem 283MB, user 0.0s, sys 0.0s, output queue size 18654
progress 50% @chr10:32032706, elapsed 0.4s, est remaining 0.4s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 28583
progress 55% @chr11:48324941, elapsed 0.4s, est remaining 0.3s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 39050
progress 60% @chr12:21882766, elapsed 0.4s, est remaining 0.3s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 48599
progress 65% @chr13:49267490, elapsed 0.5s, est remaining 0.2s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 59650
progress 70% @chr15:42684116, elapsed 0.5s, est remaining 0.2s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 69690
progress 75% @chr16:30925731, elapsed 0.5s, est remaining 0.2s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 79251
progress 80% @chr17:42543028, elapsed 0.6s, est remaining 0.1s, peak mem 305MB, user 0.0s, sys 0.0s, output queue size 89940
progress 85% @chr19:5684781, elapsed 0.6s, est remaining 0.1s, peak mem 341MB, user 0.0s, sys 0.1s, output queue size 100353
progress 90% @chr19:55715055, elapsed 0.6s, est remaining 0.1s, peak mem 341MB, user 0.0s, sys 0.1s, output queue size 109850
progress 95% @chr22:37059313, elapsed 1.0s, est remaining 0.1s, peak mem 2528MB, user 6.5s, sys 1.7s, output queue size 3247
progress 100% @chrY:57196336, elapsed 1.0s, est remaining 0.0s, peak mem 2528MB, user 6.7s, sys 1.7s, output queue size 7222
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395349
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.650 user 0.122 sys 2.257 real
done: 1 calls 0.269 user 0.100 sys 0.370 real
execute: 1 calls 0.008 user 0.001 sys 1.048 real
fetch_reads: 208647 calls 0.040 user 0.001 sys 0.158 real
fetch_ref: 2042 calls 0.002 user 0.006 sys 0.019 real
fetch_vcf: 2042 calls 1.086 user 0.051 sys 1.020 real
idle: 92 calls 0.002 user 0.001 sys 31.483 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 4.699 user 1.507 sys 6.935 real
overall: 2651439104 mem 10.056 user 18.506 sys 2.419 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory