Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/93d4618f7e53f5c44ebb5b9c6a4984/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/93d4618f7e53f5c44ebb5b9c6a4984/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/a7c54bdb8a67d1bedc2db428323585/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/93d4618f7e53f5c44ebb5b9c6a4984/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/a5c4dca82858835a13e2a461f8e09f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/a5c4dca82858835a13e2a461f8e09f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ac0lf2iu because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 19:27:08,592 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 19:27:09,543 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 19:27:09,737 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 19:27:10,952 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 19:27:11,029 - cnv_pipe.batch.run_model - INFO - Processing cluster 1012 with 175 probes
2026-05-27 19:27:11,495 - cnv_pipe.batch.run_model.cluster1012 - INFO - Child process started for cluster 1012 with 175 probes
2026-05-27 19:28:12,094 - cnv_pipe.batch.run_model.cluster1012 - INFO - Child process finished cluster 1012. Wrote cluster_1012_samples.csv and cluster_1012_params.csv
2026-05-27 19:28:12,095 - cnv_pipe.batch.run_model - INFO - Cluster 1012 finished in 61.07 seconds. Status: SUCCESS