cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.1s, est remaining 1.0s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 185
progress 10% @chr2:19966724, elapsed 0.1s, est remaining 0.9s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 825
progress 15% @chr2:189007885, elapsed 0.1s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 5087
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 7364
progress 25% @chr4:88457270, elapsed 0.2s, est remaining 0.7s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 5253
progress 30% @chr5:146463551, elapsed 0.3s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 15292
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 217
progress 40% @chr7:128806688, elapsed 0.4s, est remaining 0.5s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 9687
progress 45% @chr9:2039466, elapsed 0.4s, est remaining 0.5s, peak mem 343MB, user 0.0s, sys 0.1s, output queue size 19054
progress 50% @chr10:32567670, elapsed 0.4s, est remaining 0.4s, peak mem 343MB, user 0.0s, sys 0.1s, output queue size 28999
progress 55% @chr11:48263861, elapsed 0.5s, est remaining 0.4s, peak mem 343MB, user 0.0s, sys 0.1s, output queue size 39458
progress 60% @chr12:21809852, elapsed 0.5s, est remaining 0.4s, peak mem 352MB, user 0.0s, sys 0.1s, output queue size 49012
progress 65% @chr13:49220338, elapsed 0.6s, est remaining 0.3s, peak mem 355MB, user 0.0s, sys 0.1s, output queue size 3081
progress 70% @chr15:42684116, elapsed 0.6s, est remaining 0.3s, peak mem 364MB, user 0.0s, sys 0.1s, output queue size 13130
progress 75% @chr16:30969602, elapsed 0.7s, est remaining 0.2s, peak mem 364MB, user 0.0s, sys 0.1s, output queue size 22691
progress 80% @chr17:42562612, elapsed 0.7s, est remaining 0.2s, peak mem 364MB, user 0.0s, sys 0.1s, output queue size 33372
progress 85% @chr19:5684781, elapsed 0.7s, est remaining 0.1s, peak mem 400MB, user 0.0s, sys 0.1s, output queue size 43783
progress 90% @chr19:55772602, elapsed 0.8s, est remaining 0.1s, peak mem 400MB, user 0.0s, sys 0.1s, output queue size 53287
progress 95% @chr22:36937342, elapsed 1.1s, est remaining 0.1s, peak mem 2508MB, user 6.3s, sys 1.8s, output queue size 3225
progress 100% @chrY:57190940, elapsed 1.2s, est remaining 0.0s, peak mem 2508MB, user 6.5s, sys 1.8s, output queue size 5222
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813900
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.495 user 0.095 sys 2.179 real
done: 1 calls 0.283 user 0.109 sys 0.397 real
execute: 1 calls 0.005 user 0.001 sys 1.178 real
fetch_reads: 208647 calls 0.116 user 0.000 sys 0.152 real
fetch_ref: 2048 calls 0.016 user 0.012 sys 0.022 real
fetch_vcf: 2048 calls 0.891 user 0.032 sys 0.944 real
idle: 92 calls 0.003 user 0.001 sys 31.561 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 4.534 user 1.614 sys 6.609 real
overall: 2630103040 mem 10.435 user 6.909 sys 2.543 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory