Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/d9e15d6ff04c3f9459bd0b588d6e63/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/c4ab70cd0462681d725647f4082e13/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/c4ab70cd0462681d725647f4082e13/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/d9e15d6ff04c3f9459bd0b588d6e63/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpxB6h2/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpxB6h2/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpxB6h2/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T23:55:47.250505Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T23:55:47.251476Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T23:55:47.251502Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T23:55:47.251508Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T23:55:47.251513Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXpxB6h2'
[2026-05-27T23:55:47.251518Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T23:55:47.251523Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T23:55:47.251527Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T23:55:47.251531Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-05-27T23:55:47.251534Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T23:55:47.251538Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T23:55:47.251542Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T23:55:47.251545Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T23:55:47.251550Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T23:55:47.252449Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T23:55:47.252507Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T23:55:47.258452Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T23:55:47.259155Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T23:55:47.259384Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T23:55:47.259526Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T23:55:47.259679Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.260349Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.260498Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.260752Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.261412Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.262045Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.262161Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.262305Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.262463Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.264706Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.264940Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T23:55:47.265184Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.265336Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.265400Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.265510Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.265573Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.265681Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.265746Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.265855Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.265916Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.266235Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.266417Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267036Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267140Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267269Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267335Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267454Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267517Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267629Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267702Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.267844Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.268043Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.268461Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.268523Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.268632Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.268695Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.268806Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.268867Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.268974Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.269035Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.269145Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.269207Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.269315Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.269445Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.270756Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.270969Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.271137Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.271210Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.271436Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.271504Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.271617Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.271681Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.271794Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.271858Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.272113Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.272522Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.272647Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.272712Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.272855Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.272926Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.273040Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.273104Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.273214Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.273277Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.273384Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.273452Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289262Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289355Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289421Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289585Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289656Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289743Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289809Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289915Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.289986Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T23:55:47.291339Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T23:55:47.307333Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.307940Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.308702Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.310917Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.311247Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T23:55:47.311862Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.312596Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.313066Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.313734Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.314599Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.317640Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T23:55:47.323486Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:47.328629Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T23:55:47.329832Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T23:55:47.333429Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T23:55:47.333747Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T23:55:47.334809Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T23:55:47.488232Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.489365Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:47.492650Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T23:55:48.355296Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.356427Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.361249Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T23:55:48.472179Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.473045Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.476567Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T23:55:48.738165Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.739050Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:48.742951Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T23:55:49.004401Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.004479Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.005234Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.005677Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.010518Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:49.016297Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.016996Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.019929Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T23:55:49.059191Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T23:55:49.081549Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.081637Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.082364Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.083007Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.088217Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T23:55:49.089578Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T23:55:49.149149Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.149945Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.153028Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T23:55:49.214718Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.215482Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.218688Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T23:55:49.731582Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.732411Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.735482Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T23:55:49.796737Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.797527Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.801331Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T23:55:49.806294Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.807053Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.810500Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T23:55:49.839770Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.840624Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.843861Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T23:55:49.904940Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.905785Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.909242Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T23:55:49.970364Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.971150Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:49.975393Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T23:55:50.136128Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.136221Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.136921Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.137649Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.141885Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T23:55:50.143421Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T23:55:50.204829Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.205651Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.208970Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T23:55:50.270667Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.271498Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.275235Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T23:55:50.637211Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.637980Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.641199Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T23:55:50.670708Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.671406Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.674655Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T23:55:50.736148Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.736904Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.741286Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T23:55:50.802001Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.802772Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.807570Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T23:55:50.918683Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.919450Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:50.923840Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T23:55:51.034224Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.034879Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.038233Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T23:55:51.099401Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.100162Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.103226Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T23:55:51.103953Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.104533Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.107524Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T23:55:51.168842Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.168940Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.169550Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.169827Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.173378Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T23:55:51.174646Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T23:55:51.234577Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.235294Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.239010Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T23:55:51.268219Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.268877Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.272028Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T23:55:51.333696Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.334430Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.337525Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T23:55:51.499446Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.500159Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.504060Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T23:55:51.564991Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.565726Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.568881Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T23:55:51.630152Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.630872Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.634396Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T23:55:51.896353Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.897021Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.900873Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T23:55:51.961689Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.962507Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:51.966777Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T23:55:52.228206Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.228850Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.232712Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T23:55:52.293801Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.294434Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.297788Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T23:55:52.358918Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.359565Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.362990Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T23:55:52.975936Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.976614Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T23:55:52.979739Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T23:55:53.040956Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.041584Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.045062Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T23:55:53.206716Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.207404Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.211224Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T23:55:53.272156Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.272781Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.276903Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T23:55:53.337836Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.338468Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.342237Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T23:55:53.403629Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.404221Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.408216Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T23:55:53.469980Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.470531Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.474567Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T23:55:53.503476Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.504098Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.507455Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T23:55:53.508146Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.508699Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.512111Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T23:55:53.516699Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.517147Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.520307Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T23:55:53.549479Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.549578Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.557364Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.922606Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.923117Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T23:55:53.926244Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T23:55:53.987574Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.051785Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.052303Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.056219Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T23:55:54.117298Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.732862Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.732951Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.733416Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.734065Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.738617Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T23:55:54.739918Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T23:55:54.799661Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:54.799772Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.114467Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.114974Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.118157Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T23:55:55.179545Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.179835Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.180000Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.180945Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.181654Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.187569Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T23:55:55.188063Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T23:55:55.190419Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T23:55:55.247182Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.247259Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.247283Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.247558Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.248196Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.251454Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T23:55:55.252486Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T23:55:55.313888Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.313981Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.314225Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T23:55:55.317293Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T23:55:55.346496Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T23:55:57.816882Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T23:56:06.140218Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T23:56:06.140218Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] 
[2026-05-27T23:56:06.140218Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T23:56:06.140308Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] 
[2026-05-27T23:56:06.140316Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T23:56:06.140323Z] [nf-61d9e15d6ff04c3f9459bd0b588d6e63-73b66-hhrv4] [638_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec