File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/0e7b9b13dec1770adcaed69930d773/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed HCC1395_BL_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 0.0s, est remaining 0.6s, peak mem 96MB, user 0.2s, sys 0.4s, output queue size 5
progress 10% @chr2:71000001, elapsed 0.1s, est remaining 0.5s, peak mem 96MB, user 0.4s, sys 0.9s, output queue size 2
progress 15% @chr2:234000001, elapsed 0.1s, est remaining 0.5s, peak mem 96MB, user 0.5s, sys 1.7s, output queue size 13
progress 20% @chr3:154000001, elapsed 0.1s, est remaining 0.4s, peak mem 96MB, user 0.6s, sys 2.4s, output queue size 6
progress 25% @chr4:113000001, elapsed 0.1s, est remaining 0.4s, peak mem 96MB, user 0.7s, sys 3.1s, output queue size 8
progress 30% @chr5:87000001, elapsed 0.2s, est remaining 0.4s, peak mem 96MB, user 0.8s, sys 3.8s, output queue size 15
progress 35% @chr6:63000001, elapsed 0.2s, est remaining 0.4s, peak mem 96MB, user 1.0s, sys 4.5s, output queue size 4
progress 40% @chr7:55000001, elapsed 0.2s, est remaining 0.3s, peak mem 96MB, user 1.1s, sys 5.3s, output queue size 4
progress 45% @chr8:52000001, elapsed 0.3s, est remaining 0.3s, peak mem 96MB, user 1.2s, sys 6.1s, output queue size 9
progress 50% @chr9:36000001, elapsed 0.3s, est remaining 0.3s, peak mem 96MB, user 1.3s, sys 7.7s, output queue size 37
progress 55% @chr10:118000001, elapsed 0.4s, est remaining 0.3s, peak mem 96MB, user 1.4s, sys 9.6s, output queue size 41
progress 60% @chr11:107000001, elapsed 0.4s, est remaining 0.3s, peak mem 96MB, user 1.6s, sys 11.3s, output queue size 24
progress 65% @chr12:117000001, elapsed 0.5s, est remaining 0.3s, peak mem 96MB, user 1.7s, sys 13.2s, output queue size 32
progress 70% @chr14:88000001, elapsed 0.6s, est remaining 0.2s, peak mem 96MB, user 1.8s, sys 14.9s, output queue size 15
progress 75% @chr15:97000001, elapsed 0.6s, est remaining 0.2s, peak mem 96MB, user 1.8s, sys 16.6s, output queue size 33
progress 80% @chr17:66000001, elapsed 0.7s, est remaining 0.2s, peak mem 96MB, user 1.9s, sys 18.2s, output queue size 23
progress 85% @chr20:48000001, elapsed 0.7s, est remaining 0.1s, peak mem 96MB, user 2.0s, sys 19.8s, output queue size 33
progress 90% @chrX:30000001, elapsed 0.8s, est remaining 0.1s, peak mem 105MB, user 2.6s, sys 20.9s, output queue size 114
progress 95% @chrY:30000001, elapsed 0.9s, est remaining 0.0s, peak mem 114MB, user 2.9s, sys 21.9s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.2s, est remaining 0.0s, peak mem 147MB, user 3.9s, sys 23.9s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 51395357
reads: 1001089
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.147 user 12.662 sys 13.676 real
done: 1 calls 0.000 user 0.004 sys 0.006 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.003 user 0.003 sys 1.182 real
idle: 84 calls 0.004 user 0.015 sys 38.728 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 154193920 mem 4.182 user 24.584 sys 2.374 real